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zlus library [72 articles]

Neue Artikel in zlus Bibliothek.
  • TransportDB: a relational database of cellular membrane transport systems.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by Q Ren, KH Kang, IT Paulsen
    posted to ref-transloc by zlu on 2006-06-26 23:53:38 as **
  • A critical review of PASBio's argument structures for biomedical verbs
    (2006)
    by KB Cohen, L Hunter
    posted to ref-transloc by zlu on 2006-06-26 18:35:02 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • Direct Memory Access Parsing
    (1991)
    by CE Martin
    posted to ref-transloc by zlu on 2006-06-26 18:32:32 as **
  • Fast Extract Inference with a Factored Model for Natural Language Parsing
    Proceedings of Advances in Neural Information Processing Systems (2002)
    by Dan Klein, Christopher D Manning
    posted to ref-transloc by zlu on 2006-06-26 18:30:55 as **
  • The (Non)Utility of Predicate-Argument Frequencies for Pronoun Interpretation
    (2004), pp. 289-296.
    by Andrew Kehler, Douglas E Appelt, Lara Taylor, Aleksandr Simma
    posted to ref-transloc by zlu on 2006-06-26 18:27:22 as **
  • Gene name extraction using FlyBase resources
    Vol. 13 (2003), pp. 1-8.
    by Alex Morgan, Lynette Hirschman, Alexander Yeh, Marc Colosimo
    posted to ref-transloc by zlu on 2006-06-26 18:23:48 as **
  • GATE: A framework and graphical development environment for robust NLP tools and applications
    (2002)
    by H Cunningham, D Maynard, K Bontcheva, V Tablan
    posted to ref-transloc by zlu on 2006-06-26 18:21:04 as ** along with 2 people ianturton tulaydemir
  • BioText Team Report for the TREC 2003 Genomics Track
    (2003), pp. 612-621.
    by G Bhalotia, PI Nakov, AS Schwartz, MA Hearst
    posted to ref-transloc by zlu on 2006-06-26 18:13:53 as **
  • Extracting molecular binding relationships from biomedical text
    (2000), pp. 188-195.
    by Thomas C Rindflesch, Jayant V Rajan, Lawrence Hunter
    posted to ref-transloc by zlu on 2006-06-26 18:11:01 as **
  • Building embedded conceptual parsers
    (1994)
    by William A Fitzgerald
    posted to ref-transloc by zlu on 2006-06-26 18:04:04 as **
  • EDGAR: extraction of drugs, genes and relations from the biomedical literature.
    Pac Symp Biocomput (2000), pp. 517-528.
    by TC Rindflesch, L Tanabe, JN Weinstein, L Hunter
    posted to ref-transloc by zlu on 2006-06-26 01:06:35 as ** along with 2 people and 1 group irenas ibuch dbk-lab
  • Database resources of the National Center for Biotechnology Information.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, DM Church, M Dicuccio, R Edgar, S Federhen, LY Geer, W Helmberg, Y Kapustin, DL Kenton, O Khovayko, DJ Lipman, TL Madden, DR Maglott, J Ostell, KD Pruitt, GD Schuler, LM Schriml, E Sequeira, ST Sherry, K Sirotkin, A Souvorov, G Starchenko, TO Suzek, R Tatusov, TA Tatusova, L Wagner, E Yaschenko
    posted to ref-transloc by zlu on 2006-06-26 01:04:57 as ** along with 8 people aalibes miguel kuhn dullhunk duartemolha happy_manatee jdiggans frohike
  • Extraction of transcript diversity from scientific literature.
    PLoS Comput Biol, Vol. 1, No. 1. (June 2005)
    by PK Shah, LJ Jensen, S Boué, P Bork
    posted to blp-ie ref-transloc by zlu on 2006-06-26 01:02:40 as ** along with 3 people and 1 group Cortel yas larsjuhljensen T_lab
  • TCDB: the Transporter Classification Database for membrane transport protein analyses and information.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by MH Saier, CV Tran, RD Barabote
    posted to ref-transloc by zlu on 2006-06-26 01:00:40 as **
  • GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.
    J Biomed Inform, Vol. 37, No. 1. (February 2004), pp. 43-53.
    by A Rzhetsky, I Iossifov, T Koike, M Krauthammer, P Kra, M Morris, H Yu, PA Duboué, W Weng, WJ Wilbur, V Hatzivassiloglou, C Friedman
    posted to ref-transloc by zlu on 2006-06-26 00:54:30 as ** along with 4 people and 2 groups yas wnpx bundschu bhaddow T_lab generif_paper
  • Robust relational parsing over biomedical literature: extracting inhibit relations.
    Pac Symp Biocomput (2002), pp. 362-373.
    by J Pustejovsky, J Castaño, J Zhang, M Kotecki, B Cochran
    posted to blp-ie ref-transloc by zlu on 2006-06-26 00:51:58 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • A pragmatic information extraction strategy for gathering data on genetic interactions.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 279-285.
    by D Proux, F Rechenmann, L Julliard
    posted to ref-transloc by zlu on 2006-06-26 00:50:22 as **
  • Automated extraction of information on protein-protein interactions from the biological literature.
    Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 155-161.
    by T Ono, H Hishigaki, A Tanigami, T Takagi
    posted to blp-ie ref-transloc by zlu on 2006-06-26 00:48:52 as ** along with 7 people and 3 groups satre yggdrasil irenas yas blackbart helliontroy bundschu T_lab biomedical-nlp generif_paper
  • Beyond the clause: extraction of phosphorylation information from medline abstracts.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by M Narayanaswamy, KE Ravikumar, K Vijay-Shanker
    posted to blp-ie ref-transloc by zlu on 2006-06-26 00:47:37 as ** along with 3 people Enro miguel neils
  • Textpresso: an ontology-based information retrieval and extraction system for biological literature.
    PLoS Biol, Vol. 2, No. 11. (November 2004)
    by HM Müller, EE Kenny, PW Sternberg
    posted to ref-transloc by zlu on 2006-06-26 00:43:27 as ** along with 11 people and 3 groups irenas Enro jyuh yas dullhunk hpiwowar fisherp daniel_schober diogomartins mroos vlachmore dbk-lab T_lab AID
  • Speech and Language Processing: An Introduction to Natural Language Processing, Computational Linguistics and Speech Recognition
    (26 January 2000)
    by Daniel Jurafsky, James H Martin
    posted to ref-transloc by zlu on 2006-06-26 00:41:15 as ** along with 10 people and 1 group quianominorleo leidner metropol caporaso bigbossman matwendt aklassen mircea asterix77 spinaltap526 biomedical-nlp
  • Natural Language Processing for Online Applications: Text Retrieval, Extraction, and Categorization (Natural Language Processing)
    by Peter Jackson, Isabelle Moulinier
    posted to ref-transloc by zlu on 2006-06-26 00:40:18 as **
  • Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 557-568.
    by F Horn, AL Lau, FE Cohen
    posted to blp-ie ref-transloc by zlu on 2006-06-26 00:38:40 as ** along with 1 person and 1 group yas T_lab
  • Literature mining and database annotation of protein phosphorylation using a rule-based system
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2759-2765.
    by ZZ Hu, M Narayanaswamy, KE Ravikumar, K Vijay-Shanker, CH Wu
    posted to blp-ie ref-transloc by zlu on 2006-06-26 00:37:25 as ** along with 2 people benny jacky957
  • Two biomedical sublanguages: a description based on the theories of Zellig Harris.
    J Biomed Inform, Vol. 35, No. 4. (August 2002), pp. 222-235.
    by C Friedman, P Kra, A Rzhetsky
    posted to ref-transloc by zlu on 2006-06-26 00:36:18 as ** along with 1 person and 1 group irenas dbk-lab
  • UIMA: an architectural approach to unstructured information processing in the corporate research environment
    Nat. Lang. Eng., Vol. 10, No. 3-4. (2004), pp. 327-348.
    by David Ferrucci, Adam Lally
    posted to ref-transloc by zlu on 2006-06-26 00:34:07 as ** along with 1 person yggdrasil
  • The Biomolecular Interaction Network Database and related tools 2005 update.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, D Betel, B Bobechko, K Boutilier, E Burgess, K Buzadzija, R Cavero, C D'Abreo, I Donaldson, D Dorairajoo, MJ Dumontier, MR Dumontier, V Earles, R Farrall, H Feldman, E Garderman, Y Gong, R Gonzaga, V Grytsan, E Gryz, V Gu, E Haldorsen, A Halupa, R Haw, A Hrvojic, L Hurrell, R Isserlin, F Jack, F Juma, A Khan, T Kon, S Konopinsky, V Le, E Lee, S Ling, M Magidin, J Moniakis, J Montojo, S Moore, B Muskat, I Ng, JP Paraiso, B Parker, G Pintilie, R Pirone, JJ Salama, S Sgro, T Shan, Y Shu, J Siew, D Skinner, K Snyder, R Stasiuk, D Strumpf, B Tuekam, S Tao, Z Wang, M White, R Willis, C Wolting, S Wong, A Wrong, C Xin, R Yao, B Yates, S Zhang, K Zheng, T Pawson, BF Ouellette, CW Hogue
    posted to ref-transloc by zlu on 2006-06-26 00:29:58 as ** along with 4 people and 3 groups yas balajis frohike dagmar T_lab dIEMoSIRIS compneur
  • ProMiner: rule-based protein and gene entity recognition.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by D Hanisch, K Fundel, HT Mevissen, R Zimmer, J Fluck
    posted to blp-biocreative by zlu on 2006-06-14 22:52:00 as ** along with 4 people and 1 group TheresaNiederberger chad_davis yas incovoma T_lab
  • Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions
    (1999), pp. 60-67.
    by Christian Blaschke, Miguel A Andrade, Christos Ouzounis, Alfonso Valencia
    posted to ref-corpus by zlu on 2006-06-10 00:40:03 as **
  • Tagging gene and protein names in biomedical text.
    Bioinformatics, Vol. 18, No. 8. (August 2002), pp. 1124-1132.
    by L Tanabe, WJ Wilbur
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 23:29:42 as ** along with 7 people and 2 groups irenas jelsas fisherp bundschu flint johnkork gaudan dbk-lab generif_paper
  • ABNER: an open source tool for automatically tagging genes, proteins, and other entity names in text.
    Bioinformatics (28 April 2005)
    by Burr Settles
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 23:29:13 as ** along with 1 person and 1 group irenas dbk-lab
  • Medstract: creating large-scale information servers for biomedical libraries
    (2002), pp. 85-92.
    by J Pustejovsky, J Casta&\#241;o, R Saur&\#237;, A Rumshinsky, J Zhang, W Luo
    posted to ref-corpus by zlu on 2006-06-09 23:28:37 as **
  • The Proposition Bank: An Annotated Corpus of Semantic Roles
    Computational Linguistics, Vol. 31, No. 1. (March 2005), pp. 71-106.
    by Martha Palmer, Daniel Gildea, Paul Kingsbury
    posted to ref-corpus by zlu on 2006-06-09 23:27:35 as ** along with 6 people and 1 group garyfeng grzegorz facopad adastra student_t tulaydemir ReadingLab
  • A biological named entity recognizer.
    Pac Symp Biocomput (2003), pp. 427-438.
    by M Narayanaswamy, KE Ravikumar, K Vijay-Shanker
    posted to ref-corpus by zlu on 2006-06-09 23:24:32 as **
  • Protein names and how to find them.
    Int J Med Inform, Vol. 67, No. 1-3. (4 December 2002), pp. 49-61.
    by K Franzén, G Eriksson, F Olsson, L Asker, P Lidén, J Cöster
    posted to ref-corpus by zlu on 2006-06-09 23:15:52 as ** along with 2 people and 1 group irenas gaudan dbk-lab
  • Mining MEDLINE: abstracts, sentences, or phrases?
    Pac Symp Biocomput (2002), pp. 326-337.
    by J Ding, D Berleant, D Nettleton, E Wurtele
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 23:14:12 as ** along with 2 people and 2 groups yas bundschu T_lab generif_paper
  • Toward information extraction: identifying protein names from biological papers.
    Pac Symp Biocomput (1998), pp. 707-718.
    by K Fukuda, A Tamura, T Tsunoda, T Takagi
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 23:12:43 as ** along with 3 people and 2 groups caporaso bundschu johnkork biomedical-nlp generif_paper
  • Extracting human protein interactions from MEDLINE using a full-sentence parser.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611.
    by N Daraselia, A Yuryev, S Egorov, S Novichkova, A Nikitin, I Mazo
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 23:08:40 as ** along with 5 people and 1 group satre irenas Enro miguel natsu dbk-lab
  • Protein Targetting, Transport, and Translocation
    (30 September 2001)
    by RE Dalbey, Gunnar Von Heijne
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 23:07:47 as **
  • Constructing Biological Knowledge Bases by Extracting Information from Text Sources
    (1999), pp. 77-86.
    by Mark Craven, Johan Kumlien
    posted to ref-corpus by zlu on 2006-06-09 23:04:27 as **
  • The GENIA Project: Corpus-based Knowledge Acquisition and Information Extraction from Genome Research Papers
    (1999), pp. 271-272.
    by N Collier, H Park, N Ogata, Y Tateisi, C Nobata, T Ohta, T Sekimizu, H Imai, K Ibushi, J Tsujii
    posted to ref-corpus by zlu on 2006-06-09 22:55:15 as **
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 22:46:23 as ** along with 32 people and 5 groups roys dgront marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Molecular Biology of the Cell, Fourth Edition
    (2002)
    by Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Keith Roberts, Peter Walter
    posted to ref-corpus ref-transloc by zlu on 2006-06-09 22:44:14 as ** along with 5 people and 3 groups jermth dherkova rhem1224 cwbrown larios EisenLab TCR_Signaling SysbioMPI-TCells
  • A system for identifying named entities in biomedical text: how results from two evaluations reflect on both the system and the evaluations
    Comparative and Functional Genomics, Vol. 6, No. 1-2. (February 2005), pp. 77-85.
    by Dingare Shipra, Nissim Malvina, Finkel Jenny, Manning Christopher, Grover Claire
    posted to blp-biocreative by zlu on 2006-06-05 20:26:15 as **
  • Automatically annotating documents with normalized gene lists.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by J Crim, R McDonald, F Pereira
    posted to blp-biocreative by zlu on 2006-05-22 16:28:22 as ** along with 2 people and 1 group oannes vlachmore Regulomics_UCHSC
  • PASBio: predicate-argument structures for event extraction in molecular biology.
    BMC Bioinformatics, Vol. 5 (19 October 2004)
    by T Wattarujeekrit, PK Shah, N Collier
    posted to ref-corpus ref-transloc by zlu on 2006-05-11 18:38:24 as ** along with 5 people and 2 groups yas caporaso helliontroy johnkork mircea T_lab biomedical-nlp
  • Finding GeneRIFs via GO Annotations
    (2006), pp. 52-61.
    by Zhiyong Lu, Kevin B Cohen, Lawrence Hunter
    posted to blp-summarization ref-corpus ref-transloc by zlu on 2006-05-09 23:57:54 as **
  • Integrated annotation for biomedical information extraction
    (2004)
    by K Seth, A Bies, M Liberman, M Mandel, R Mcdonald, M Palmer, A Schein
    posted to blp-annotation ref-corpus by zlu on 2006-04-30 23:13:59 as ** along with 2 people and 1 group helliontroy balex biomedical-nlp
  • Creating Semantic Web Contents with Protege-2000
    IEEE Intelligent Systems, Vol. 2, No. 16. (2001), pp. 60-71.
    by Natalya F Noy, Michael Sintek, Stefan Decker, Monica Crubezy, Ray W Fergerson, Mark A Musen
    posted to blp-annotation ref-corpus ref-transloc by zlu on 2006-04-30 22:51:03 as **
  • Evaluation of BioCreAtIvE assessment of task 2.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by C Blaschke, EA Leon, M Krallinger, A Valencia
    posted to blp-biocreative by zlu on 2006-04-30 22:01:24 as read along with 3 people and 2 groups yggdrasil yas helliontroy T_lab biomedical-nlp
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