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yoanjacquemins library [148 articles]

Neue Artikel in yoanjacquemins Bibliothek.
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes.
    Genome Res (12 December 2005)
    by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    posted to promoter est by yoanjacquemin on 2008-05-19 08:28:16 as read along with 7 people bethsabrina ujh textoris troels_marstrand olympos nosada17 antonkratz
  • Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family.
    AIDS research and human retroviruses, Vol. 16, No. 8. (20 May 2000), pp. 731-740.
    by C Voisset, O Bouton, F Bedin, L Duret, B Mandrand, F Mallet, G Paranhos-Baccala
    posted to te herv by yoanjacquemin on 2008-05-18 12:48:31 as read along with 1 person bethsabrina
  • notes Fuzzy association rules for biological data analysis: a case study on yeast
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Francisco Lopez, Armando Blanco, Fernando Garcia, Carlos Cano, Antonio Marin
    posted to datamining fuzzy by yoanjacquemin on 2008-02-19 13:12:58 as read along with 4 people and 1 group grahamc laughcry barriot xili03 Bioinformatics
  • Selection of optimal DNA oligos for gene expression arrays.
    Bioinformatics, Vol. 17, No. 11. (November 2001), pp. 1067-1076.
    by F Li, GD Stormo
    posted to array probe by yoanjacquemin on 2008-02-18 14:59:21 as **
  • Improved nearest-neighbor parameters for predicting DNA duplex stability.
    Biochemistry, Vol. 35, No. 11. (19 March 1996), pp. 3555-3562.
    by J SantaLucia, HT Allawi, PA Seneviratne
    posted to array probe by yoanjacquemin on 2008-02-18 14:57:55 as ** along with 2 people davidng stsaft
  • OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
    Nucl. Acids Res., Vol. 31, No. 12. (15 June 2003), pp. 3057-3062.
    by Jean-Marie Rouillard, Michael Zuker, Erdogan Gulari
    posted to array probe by yoanjacquemin on 2008-02-18 14:55:52 as ***** along with 4 people stsaft malcook cthachuk nedwards
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to herv te by yoanjacquemin on 2008-02-18 09:17:52 as ** along with 3 people and 1 group wenhan cisevol FMoncini BergmanLab
  • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
    J Virol, Vol. 80, No. 21. (November 2006), pp. 10752-10762.
    by A Buzdin, E Kovalskaya-Alexandrova, E Gogvadze, E Sverdlov
    posted to herv te by yoanjacquemin on 2008-02-18 09:12:53 as ** along with 1 person and 1 group cisevol BergmanLab
  • Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray.
    J Virol, Vol. 79, No. 1. (January 2005), pp. 341-352.
    by W Seifarth, O Frank, U Zeilfelder, B Spiess, AD Greenwood, R Hehlmann, C Leib-Mösch
    posted to herv te by yoanjacquemin on 2008-02-18 09:10:34 as read
  • Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice
    Oncogene, Vol. aop, No. current.
    by G Howard, R Eiges, F Gaudet, R Jaenisch, A Eden
    posted to herv te by yoanjacquemin on 2008-02-18 08:53:43 as **
  • Expression pattern analysis of transcribed HERV sequences is complicated by ex vivo recombination
    Retrovirology, Vol. 4 (06 June 2007), 39.
    by Aline Flockerzi, Jochen Maydt, Oliver Frank, Alessia Ruggieri, Esther Maldener, Wolfgang Seifarth, Patrik Medstrand, Thomas Lengauer, Andreas Meyerhans, Christine Leib-Mosch, Eckart Meese, Jens Mayer
    posted to herv te by yoanjacquemin on 2008-02-18 08:50:06 as **
  • The discovery of endogenous retroviruses
    Retrovirology, Vol. 3 (03 October 2006), 67.
    by Robin A Weiss
    posted to herv te by yoanjacquemin on 2008-02-18 08:48:59 as read
  • Human-specific integrations of the HERV-K endogenous retrovirus family.
    J Virol, Vol. 72, No. 12. (December 1998), pp. 9782-9787.
    by P Medstrand, DL Mager
    posted to herv te by yoanjacquemin on 2008-02-18 08:47:34 as read
  • The approximately 30-million-year-old ERVPb1 envelope gene is evolutionarily conserved among hominoids and Old World monkeys.
    Genomics, Vol. 86, No. 6. (December 2005), pp. 685-691.
    by L Aagaard, P Villesen, AL Kjeldbjerg, FS Pedersen
    posted to env herv te by yoanjacquemin on 2008-02-18 08:44:11 as read
  • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans.
    J Biol Chem, Vol. 276, No. 3. (19 January 2001), pp. 1896-1903.
    by P Medstrand, JR Landry, DL Mager
    posted to 324 cited est herv promoter te by yoanjacquemin on 2008-02-12 16:46:01 as ** along with 2 people and 1 group ushishir cisevol cis-regulatory-evolution
  • Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.
    Cancer Immun, Vol. 4 (11 February 2004)
    by Y Stauffer, G Theiler, P Sperisen, Y Lebedev, CV Jongeneel
    posted to 324 cited est herv te by yoanjacquemin on 2008-02-12 16:03:15 as **
  • Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional.
    Genome Res, Vol. 14, No. 3. (March 2004), pp. 367-372.
    by KA Frazer, H Tao, K Osoegawa, PJ de Jong, X Chen, MF Doherty, DR Cox
    posted to 314 cited conservation by yoanjacquemin on 2008-02-12 15:16:36 as **
  • ERVWE1 (Endogenous Retroviral family W, Env(C7), member 1)
    Atlas Genet Cytogenet Oncol Haematol (September 2007)
    by J Gimenez, F Mallet
    posted to 13 cited herv syncytin by yoanjacquemin on 2008-02-12 08:53:48 as **
  • Phylogeny of human endogenous and exogenous retroviruses
    (2005), pp. 186-203.
    by A Katzourakis, M Tristem
    edited by ED Sverdlov
    posted to cited families herv intro te by yoanjacquemin on 2008-02-12 08:12:45 as **
  • Evidence of selection on the domesticated ERVWE1 env retroviral element involved in placentation.
    Mol Biol Evol, Vol. 21, No. 10. (October 2004), pp. 1895-1901.
    by B Bonnaud, O Bouton, G Oriol, V Cheynet, L Duret, F Mallet
    posted to 314 cited herv selection te by yoanjacquemin on 2008-02-11 10:47:19 as **
  • Physiological knockout of the envelope gene of the single-copy ERV-3 human endogenous retrovirus in a fraction of the Caucasian population.
    J Virol, Vol. 72, No. 4. (April 1998), pp. 3442-3445.
    by N de Parseval, T Heidmann
    posted to 323 cited herv placenta te by yoanjacquemin on 2008-02-11 10:14:30 as **
  • Efficient combination of multiple word models for improved sequence comparison.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2529-2533.
    by X Huang, L Ye, HH Chou, IH Yang, KM Chao
    posted to 321 cited combination method by yoanjacquemin on 2008-02-11 09:57:43 as **
  • Multiple Organism Algorithm for Finding Ultraconserved Elements
    BMC Bioinformatics, Vol. 9 (11 January 2008), 15.
    by Scott Christley, Neil F Lobo, Greg Madey
    posted to 314 cited herv by yoanjacquemin on 2008-02-11 09:05:22 as ** along with 2 people and 1 group cisevol fpattyn cis-regulatory-evolution
  • Multiple effects govern endogenous retrovirus survival patterns in human gene introns
    Genome Biology, Vol. 7 (27 September 2006), R86.
    by Louie N van de Lagemaat, Patrik Medstrand, Dixie L Mager
    posted to 311 cited herv te by yoanjacquemin on 2008-02-11 08:43:26 as ** along with 1 person and 1 group paulcartwright BergmanLab
  • Multiple Mechanisms of Polyadenylation site choice in male germ cells
    (May 2007)
    by Mcmahon
    posted to 123 cited polya by yoanjacquemin on 2008-02-09 09:18:34 as read
  • Patterns of variant polyadenylation signal usage in human genes.
    Genome Res, Vol. 10, No. 7. (July 2000), pp. 1001-1010.
    by E Beaudoing, S Freier, JR Wyatt, JM Claverie, D Gautheret
    posted to 123 cited polya by yoanjacquemin on 2008-02-09 09:13:18 as read along with 2 people Cortel bertelsen
  • Alignment of whole genomes.
    Nucleic Acids Res, Vol. 27, No. 11. (1 June 1999), pp. 2369-2376.
    by AL Delcher, S Kasif, RD Fleischmann, J Peterson, O White, SL Salzberg
    posted to 21 cited suffixtree by yoanjacquemin on 2008-02-08 13:10:52 as ** along with 3 people and 1 group wenhan bozdagd dragonrez MBLAB
  • Replacing suffix trees with enhanced suffix arrays
    Journal of Discrete Algorithms, Vol. 2, No. 1. (March 2004), pp. 53-86.
    by Mohamed I Abouelhoda, Stefan Kurtz, Enno Ohlebusch
    posted to 21 cited suffixtree by yoanjacquemin on 2008-02-08 13:09:34 as ** along with 1 person treangen
  • On-Line Construction of Suffix Trees
    Algorithmica, Vol. 14, No. 3. (1995), pp. 249-260.
    by Esko Ukkonen
    posted to 21 cited suffixtree by yoanjacquemin on 2008-02-08 13:09:03 as ** along with 4 people creswick sudhanshu_goswami ichii386 tmarscha
  • Divergent outcomes of intrachromosomal recombination on the human Y chromosome: male infertility and recurrent polymorphism.
    J Med Genet, Vol. 37, No. 10. (October 2000), pp. 752-758.
    by P Blanco, M Shlumukova, CA Sargent, MA Jobling, N Affara, ME Hurles
    posted to 11 cited deletion herv te by yoanjacquemin on 2008-02-08 12:57:27 as **
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to 121 antisens cited herv te by yoanjacquemin on 2008-02-08 10:17:14 as ** along with 6 people and 2 groups gpappas balicea dchughes sebastien_vigneau timflutre cisevol cis-regulatory-evolution BergmanLab
  • Identification of endogenous retroviral reading frames in the human genome.
    Retrovirology, Vol. 1 (2004)
    by P Villesen, L Aagaard, C Wiuf, FS Pedersen
    posted to 312 324 cited herv te by yoanjacquemin on 2008-02-08 09:59:27 as **
  • LTR_STRUC: a novel search and identification program for LTR retrotransposons.
    Bioinformatics, Vol. 19, No. 3. (12 February 2003), pp. 362-367.
    by EM McCarthy, JF McDonald
    posted to 22 cited herv te by yoanjacquemin on 2008-02-08 00:40:32 as ** along with 1 person urgi
  • RepeatMasker
    http://www.repeatmasker.org (2004)
    by AFA Smit, R Hubley, P Green
    posted to 214 cited te by yoanjacquemin on 2008-02-07 17:04:32 as ** along with 1 person urgi
  • Binding and susceptibility to postentry restriction factors in monkey cells are specified by distinct regions of the human immunodeficiency virus type 1 capsid.
    J Virol, Vol. 78, No. 10. (May 2004), pp. 5423-5437.
    by CM Owens, B Song, MJ Perron, PC Yang, M Stremlau, J Sodroski
    posted to 132 cited herv ref1 te by yoanjacquemin on 2008-02-07 13:10:31 as **
  • Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae.
    Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 725-730.
    by A Dupressoir, G Marceau, C Vernochet, L Bénit, C Kanellopoulos, V Sapin, T Heidmann
    posted to 131 cited erv syncytin te by yoanjacquemin on 2008-02-07 09:35:27 as **
  • DBD taxonomically broad transcription factor predictions: new content and functionality
    Nucl. Acids Res., Vol. 36, No. suppl_1. (2008), pp. D88-92.
    by Derek Wilson, Varodom Charoensawan, Sarah K Kummerfeld, Sarah A Teichmann
    posted to 122 cited db tf by yoanjacquemin on 2008-02-06 16:19:08 as **
  • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 487-489.
    by JF Hughes, JM Coffin
    posted to 11 cited herv te by yoanjacquemin on 2008-02-06 14:41:37 as **
  • Monocyte activation and differentiation augment human endogenous retrovirus expression: implications for inflammatory brain diseases.
    Ann Neurol, Vol. 50, No. 4. (October 2001), pp. 434-442.
    by JB Johnston, C Silva, J Holden, KG Warren, AW Clark, C Power
    posted to 134 alzheimer cited herv te by yoanjacquemin on 2008-02-01 17:21:45 as **
  • Quantitative analysis of human endogenous retrovirus-W env in neuroinflammatory diseases.
    AIDS Res Hum Retroviruses, Vol. 22, No. 12. (December 2006), pp. 1253-1259.
    by JM Antony, M Izad, A Bar-Or, KG Warren, M Vodjgani, F Mallet, C Power
    posted to 134 cited herv ms te by yoanjacquemin on 2008-02-01 17:12:45 as **
  • A new endogenous retroviral sequence is expressed in skin of patients with psoriasis
    British Journal of Dermatology, Vol. 153, No. 1. (July 2005), pp. 83-89.
    by J-P Moles, A Tesniere, J-J Guilhou
    posted to herv psoriasis te by yoanjacquemin on 2008-02-01 17:11:56 as **
  • Expression of human endogenous retrovirus K in melanomas and melanoma cell lines.
    Cancer Res, Vol. 65, No. 10. (15 May 2005), pp. 4172-4180.
    by K Büscher, U Trefzer, M Hofmann, W Sterry, R Kurth, J Denner
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:10:49 as **
  • Expression of a human endogenous retrovirus, HERV-K, in the blood cells of leukemia patients.
    Leukemia, Vol. 16, No. 2. (February 2002), pp. 254-259.
    by S Depil, C Roche, P Dussart, L Prin
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:10:00 as **
  • Identification of differentially expressed genes in colorectal adenoma compared to normal tissue by suppression subtractive hybridization.
    Int J Oncol, Vol. 24, No. 4. (April 2004), pp. 987-994.
    by N Wentzensen, B Wilz, P Findeisen, R Wagner, W Dippold, M von Knebel Doeberitz, J Gebert
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:09:10 as **
  • Human endogenous retrovirus rec interferes with germ cell development in mice and may cause carcinoma in situ, the predecessor lesion of germ cell tumors
    Oncogene, Vol. aop, No. current. (28 February 2005)
    by Uwe M Galli, Marlies Sauter, Bernd Lecher, Simone Maurer, Hermann Herbst, Klaus Roemer, Nikolaus Mueller-Lantzsch
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:08:20 as **
  • Endogenous retroviruses in systemic lupus erythematosus: candidate lupus viruses.
    Clin Immunol, Vol. 102, No. 2. (February 2002), pp. 107-116.
    by MK Adelman, JJ Marchalonis
    posted to 134 cited herv lupus te by yoanjacquemin on 2008-02-01 17:05:47 as **
  • L1 and HERV-W retrotransposons are hypomethylated in human ovarian carcinomas.
    Mol Cancer, Vol. 3 (26 April 2004)
    by L Menendez, BB Benigno, JF McDonald
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:04:50 as **
  • Human endogenous retrovirus expression profiles in samples from brains of patients with schizophrenia and bipolar disorders.
    J Virol, Vol. 79, No. 17. (September 2005), pp. 10890-10901.
    by O Frank, M Giehl, C Zheng, R Hehlmann, C Leib-Mösch, W Seifarth
    posted to 134 cited herv schizophrenia te by yoanjacquemin on 2008-02-01 17:02:03 as **
  • Endogenous retroviral sequence is fused to FGFR1 kinase in the 8p12 stem-cell myeloproliferative disorder with t(8;19)(p12;q13.3).
    Blood, Vol. 101, No. 1. (1 January 2003), pp. 286-288.
    by G Guasch, C Popovici, F Mugneret, M Chaffanet, P Pontarotti, D Birnbaum, MJ Pébusque
    posted to 133 cancer cited herv te by yoanjacquemin on 2008-02-01 16:07:08 as **
  • Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins
    Proceedings of the National Academy of Sciences, Vol. 104, No. 51. (18 December 2007), pp. 20534-20539.
    by Marianne Mangeney, Martial Renard, Geraldine Schlecht-Louf, Isabelle Bouallaga, Odile Heidmann, Claire Letzelter, Aurelien Richaud, Bertrand Ducos, Thierry Heidmann
    posted to 132 cited herv immun syncytin te by yoanjacquemin on 2008-02-01 15:42:48 as ** along with 1 person bethsabrina
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