registrieren | anmelden | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

wenhans library [337 articles]

Neue Artikel in wenhans Bibliothek.
  • Genes in prokaryotic genomes and their computational prediction
    In Computational Methods for Understanding Bacterial and Archaeal Genoms, Vol. 7
    by RK Azad
    edited by Y Xu, JP Gogarten
    posted to 200806_prop by wenhan on 2008-06-27 20:26:40 as **
  • Prokaryotic gene identification in silico
    by M Borodovsky, R Azad
    edited by MJ Dunn, LB Jorde, PFR Little, S Subramaniam
    posted to 200806_prop by wenhan on 2008-06-25 22:54:54 as **
  • Comparative analysis of mouse and human DNA and applications to exon prediction
    (2000)
    by Batzoglou, Pachter, Mesirov, Berger, Lander
    posted to 200806_prop by wenhan on 2008-06-25 22:41:42 as **
  • Applications of generalized pair hidden Markov models to alignment and gene finding problems.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 389-399.
    by L Pachter, M Alexandersson, S Cawley
    posted to 200806_prop by wenhan on 2008-06-25 22:24:41 as ** along with 1 person and 1 group azazello MBLAB
  • Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 3. (March 1981), pp. 1596-1600.
    by JC Shepherd
    posted to 200806_prop by wenhan on 2008-06-25 22:23:04 as **
  • Mining Genes in DNA Using GeneScout
    by Michael M Yin, Jason TL Wang
    posted to 200806_prop by wenhan on 2008-06-25 22:20:11 as **
  • Identification of new human cadherin genes using a combination of protein motif search and gene finding methods.
    Journal of molecular biology, Vol. 337, No. 2. (19 March 2004), pp. 307-317.
    by JC Höng, NV Ivanov, P Hodor, M Xia, N Wei, R Blevins, D Gerhold, M Borodovsky, Y Liu
    posted to 200806_prop by wenhan on 2008-06-25 21:59:45 as **
  • Effects of choice of DNA sequence model structure on gene identification accuracy.
    Bioinformatics (Oxford, England), Vol. 20, No. 7. (1 May 2004), pp. 993-1005.
    by RK Azad, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:59:12 as **
  • Probabilistic methods of identifying genes in prokaryotic genomes: connections to the HMM theory.
    Briefings in bioinformatics, Vol. 5, No. 2. (June 2004), pp. 118-130.
    by RK Azad, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:58:50 as **
  • Three new isoforms of Caenorhabditis elegans UNC-89 containing MLCK-like protein kinase domains.
    Journal of molecular biology, Vol. 342, No. 1. (3 September 2004), pp. 91-108.
    by TM Small, KM Gernert, DB Flaherty, KB Mercer, M Borodovsky, GM Benian
    posted to 200806_prop by wenhan on 2008-06-25 21:58:28 as **
  • Identification of proteins associated with murine cytomegalovirus virions.
    Journal of virology, Vol. 78, No. 20. (October 2004), pp. 11187-11197.
    by LM Kattenhorn, R Mills, M Wagner, A Lomsadze, V Makeev, M Borodovsky, HL Ploegh, BM Kessler
    posted to 200806_prop by wenhan on 2008-06-25 21:58:08 as **
  • Statistical significance in biological sequence analysis.
    Brief Bioinform, Vol. 7, No. 1. (March 2006), pp. 2-24.
    by AY Mitrophanov, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:55:19 as ** along with 2 people Ayest xili03
  • Protein secondary structure prediction with semi Markov HMMs.
    Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 4 (2004), pp. 2964-2967.
    by Z Aydin, Y Altunbasak, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:54:28 as **
  • Multiple testing in large-scale contingency tables: inferring patterns of pair-wise amino acid association in beta-sheets.
    International journal of bioinformatics research and applications, Vol. 2, No. 2. (2006), pp. 193-217.
    by SB Kim, KL Tsui, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:54:07 as **
  • Probabilistic models for biological sequences: selection and Maximum Likelihood estimation.
    International journal of bioinformatics research and applications, Vol. 2, No. 3. (2006), pp. 305-324.
    by S Ekisheva, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:53:48 as **
  • Convergence rate estimation for the TKF91 model of biological sequence length evolution.
    Mathematical biosciences, Vol. 209, No. 2. (October 2007), pp. 470-485.
    by AY Mitrophanov, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:52:01 as **
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to 200806_prop by wenhan on 2008-06-25 21:51:41 as ** along with 3 people and 1 group cisevol yoanjacquemin FMoncini BergmanLab
  • Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.
    Journal of theoretical biology, Vol. 246, No. 1. (7 May 2007), pp. 113-128.
    by AY Mitrophanov, G Churchward, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:51:21 as **
  • Evaluating the protein coding potential of exonized transposable element sequences
    Biology Direct, Vol. 2 (26 November 2007), 31.
    by Jittima Piriyapongsa, Mark T Rutledge, Sanil Patel, Mark Borodovsky, King I Jordan
    posted to 200806_prop by wenhan on 2008-06-25 21:50:43 as ** along with 1 person and 1 group cisevol BergmanLab
  • Computational prediction of eukaryotic protein-coding genes.
    Nat Rev Genet, Vol. 3, No. 9. (September 2002), pp. 698-709.
    by MQ Zhang
    posted to 200806_prop by wenhan on 2008-06-25 21:50:25 as ** along with 3 people and 3 groups indigoviolet dchughes GustavoLacerda EisenLab G4ID Genetics-of-Gambling
  • Identification of protein coding regions in the human genome by quadratic discriminant analysis.
    Proc Natl Acad Sci U S A, Vol. 94, No. 2. (21 January 1997), pp. 565-568.
    by MQ Zhang
    posted to 200806_prop by wenhan on 2008-06-25 21:49:47 as ** along with 1 person and 1 group indigoviolet EisenLab
  • Recognizing exons in genomic sequence using GRAIL II.
    Genetic engineering, Vol. 16 (1994), pp. 241-253.
    by Y Xu, R Mural, M Shah, E Uberbacher
    posted to 200806_prop by wenhan on 2008-06-25 21:47:30 as **
  • SGP-1: prediction and validation of homologous genes based on sequence alignments.
    Genome Res, Vol. 11, No. 9. (September 2001), pp. 1574-1583.
    by T Wiehe, S Gebauer-Jung, T Mitchell-Olds, R Guigó
    posted to 200806_prop by wenhan on 2008-06-25 21:47:05 as ** along with 1 person and 1 group indigoviolet EisenLab
  • Spidey: a tool for mRNA-to-genomic alignments.
    Genome research, Vol. 11, No. 11. (November 2001), pp. 1952-1957.
    by SJ Wheelan, DM Church, JM Ostell
    posted to 200806_prop by wenhan on 2008-06-25 21:46:33 as **
  • Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes.
    Bioinformatics (Oxford, England), Vol. 15, No. 10. (October 1999), pp. 776-784.
    by A Wagner
    posted to 200806_prop by wenhan on 2008-06-25 21:46:10 as **
  • Computational discovery of internal micro-exons.
    Genome research, Vol. 13, No. 6A. (June 2003), pp. 1216-1221.
    by N Volfovsky, BJ Haas, SL Salzberg
    posted to 200806_prop by wenhan on 2008-06-25 21:45:51 as **
  • Optimal spliced alignment of homologous cDNA to a genomic DNA template.
    Bioinformatics, Vol. 16, No. 3. (March 2000), pp. 203-211.
    by J Usuka, W Zhu, V Brendel
    posted to 200806_prop by wenhan on 2008-06-25 21:45:24 as ** along with 1 person GustavoLacerda
  • Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.
    Journal of molecular biology, Vol. 297, No. 5. (14 April 2000), pp. 1075-1085.
    by J Usuka, V Brendel
    posted to 200806_prop by wenhan on 2008-06-25 21:44:16 as **
  • Estimation and reliability of molecular sequence alignments.
    Biometrics, Vol. 51, No. 1. (March 1995), pp. 100-113.
    by JL Thorne, GA Churchill
    posted to 200806_prop by wenhan on 2008-06-25 21:43:15 as **
  • A probabilistic model for detecting coding regions in DNA sequences.
    IMA journal of mathematics applied in medicine and biology, Vol. 11, No. 3. (1994), pp. 149-160.
    by A Thomas, MH Skolnick
    posted to 200806_prop by wenhan on 2008-06-25 21:42:52 as **
  • Gene-finding approaches for eukaryotes.
    Genome research, Vol. 10, No. 4. (April 2000), pp. 394-397.
    by GD Stormo
    posted to 200806_prop by wenhan on 2008-06-25 21:42:14 as **
  • Combined use of sequence similarity and codon bias for coding region identification.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 1, No. 1. (1994), pp. 39-50.
    by DJ States, W Gish
    posted to 200806_prop by wenhan on 2008-06-25 21:41:55 as **
  • Computer methods to locate signals in nucleic acid sequences.
    Nucleic acids research, Vol. 12, No. 1 Pt 2. (11 January 1984), pp. 505-519.
    by R Staden
    posted to 200806_prop by wenhan on 2008-06-25 21:40:11 as **
  • Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors.
    Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3589-3592.
    by A Sosinsky, CP Bonin, RS Mann, B Honig
    posted to 200806_prop by wenhan on 2008-06-25 21:39:51 as ** along with 1 person oelemento
  • Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames.
    Nucleic acids research, Vol. 22, No. 24. (11 December 1994), pp. 5156-5163.
    by VV Solovyev, AA Salamov, CB Lawrence
    posted to 200806_prop by wenhan on 2008-06-25 21:39:31 as **
  • Identification of protein coding regions in genomic DNA.
    Journal of molecular biology, Vol. 248, No. 1. (21 April 1995), pp. 1-18.
    by EE Snyder, GD Stormo
    posted to 200806_prop by wenhan on 2008-06-25 21:39:01 as **
  • Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum.
    Journal of molecular biology, Vol. 309, No. 2. (1 June 2001), pp. 347-360.
    by MM Slupska, AG King, S Fitz-Gibbon, J Besemer, M Borodovsky, JH Miller
    posted to 200806_prop by wenhan on 2008-06-25 21:35:50 as **
  • Discovery of novel transcription factor binding sites by statistical overrepresentation.
    Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560.
    by S Sinha, M Tompa
    posted to 200806_prop by wenhan on 2008-06-25 21:35:20 as ** along with 8 people ep161302 kaarsinogen dquest xiaobeizhao smiddha GeeSharpMinor xi03 xili03
  • Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.
    Bioinformatics (Oxford, England), Vol. 15, No. 11. (November 1999), pp. 874-886.
    by AM Shmatkov, AA Melikyan, FL Chernousko, M Borodovsky
    posted to 200806_prop by wenhan on 2008-06-25 21:34:41 as **
  • PipMaker---A Web Server for Aligning Two Genomic DNA Sequences
    Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 577-586.
    by Scott Schwartz, Zheng Zhang, Kelly A Frazer, Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller
    posted to 200806_prop by wenhan on 2008-06-25 21:31:46 as ** along with 3 people aprasad michC adijr
  • MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3518-3524.
    by Scott Schwartz, Laura Elnitski, Mei Li, Matt Weirauch, Cathy Riemer, Arian Smit, Nisc C Program, Eric D Green, Ross C Hardison, Webb Miller
    posted to 200806_prop by wenhan on 2008-06-25 21:30:56 as ** along with 1 person aprasad
  • Bayesian segmentation of protein secondary structure.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 1-2. (r 2000), pp. 233-248.
    by SC Schmidler, JS Liu, DL Brutlag
    posted to 200806_prop by wenhan on 2008-06-25 21:30:35 as **
  • GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.
    Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3597-3600.
    by SD Schlueter, Q Dong, V Brendel
    posted to 200806_prop by wenhan on 2008-06-25 21:30:06 as **
  • A decision tree system for finding genes in DNA.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 5, No. 4. (1998), pp. 667-680.
    by S Salzberg, AL Delcher, KH Fasman, J Henderson
    posted to 200806_prop by wenhan on 2008-06-25 21:28:37 as **
  • Microbial gene identification using interpolated Markov models.
    Nucleic Acids Res, Vol. 26, No. 2. (15 January 1998), pp. 544-548.
    by SL Salzberg, AL Delcher, S Kasif, O White
    posted to 200806_prop by wenhan on 2008-06-25 21:28:02 as ** along with 5 people and 1 group ziquje gg bnchakraborty bluto jguinney MBLAB
  • Ab initio gene finding in Drosophila genomic DNA.
    Genome research, Vol. 10, No. 4. (April 2000), pp. 516-522.
    by AA Salamov, VV Solovyev
    posted to 200806_prop by wenhan on 2008-06-25 21:27:33 as **
  • EcoGene: a genome sequence database for Escherichia coli K-12.
    Nucleic acids research, Vol. 28, No. 1. (1 January 2000), pp. 60-64.
    by KE Rudd
    posted to 200806_prop by wenhan on 2008-06-25 21:27:04 as **
  • Gene structure prediction using information on homologous protein sequence.
    Computer applications in the biosciences : CABIOS, Vol. 12, No. 3. (June 1996), pp. 161-170.
    by IB Rogozin, L Milanesi, NA Kolchanov
    posted to 200806_prop by wenhan on 2008-06-25 21:23:36 as **
  • Evaluation of Gene-Finding Programs on Mammalian Sequences
    Genome Res., Vol. 11, No. 5. (1 May 2001), pp. 817-832.
    by Sanja Rogic, Alan K Mackworth, Francis B Ouellette
    posted to 200806_prop by wenhan on 2008-06-25 21:22:56 as ** along with 2 people and 1 group ep161302 indigoviolet EisenLab
  • Large scale bacterial gene discovery by similarity search.
    Nature genetics, Vol. 7, No. 2. (June 1994), pp. 205-214.
    by K Robison, W Gilbert, GM Church
    posted to 200806_prop by wenhan on 2008-06-25 21:22:23 as **
    • Bemerkung: Sie können diese Seite wie folgt zitieren: http://www.citeulike.org/user/wenhan

    Result page: 1 2 3 4 5 6 7 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.