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waszaks library [154 articles]

Neue Artikel in waszaks ordered by to_read.
  • Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.
    Methods Mol Biol, Vol. 338 (2006), pp. 175-190.
    by T Barrett, R Edgar
  • Animal Models for Target Diseases in Gene Therapy - using DNA and siRNA Delivery Strategies.
    Pharmaceutical research (8 October 2008)
    by Ian S Blagbrough, Chiara Zara
    posted to cat by waszak on 2008-10-09 19:04:35 as **
  • Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase.
    Molecular biology of the cell, Vol. 19, No. 1. (January 2008), pp. 171-180.
    by TM Roberts, IW Zaidi, JA Vaisica, M Peter, GW Brown
    posted to yeast tiling microarray affymetrix by waszak on 2008-10-08 17:43:34 as **
  • A high-resolution atlas of nucleosome occupancy in yeast
    Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1235-1244.
    by William Lee, Desiree Tillo, Nicolas Bray, Randall H Morse, Ronald W Davis, Timothy R Hughes, Corey Nislow
    posted to yeast tiling microarray by waszak on 2008-10-08 17:42:46 as ** along with 3 people aalibes epigenetics siebert
  • Automated generation of heuristics for biological sequence comparison
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Guy Slater, Ewan Birney
  • A high-resolution map of transcription in the yeast genome
    PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325.
    by Lior David, Wolfgang Huber, Marina Granovskaia, Joern Toedling, Curtis J Palm, Lee Bofkin, Ted Jones, Ronald W Davis, Lars M Steinmetz
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
  • A comparison study: applying segmentation to array CGH data for downstream analyses
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4084-4091.
    by Hanni Willenbrock, Jane Fridlyand
    posted to software r cnp cgh algorithm acgh by waszak on 2008-10-08 15:15:21 as ** along with 2 people shigepong ellakat
  • Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability
    Nat Rev Genet, Vol. 8, No. 8. (2007), pp. 639-646.
    by Jacques S Beckmann, Xavier Estivill, Stylianos E Antonarakis
  • Copy-number variation and association studies of human disease.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
  • Integrated detection and population-genetic analysis of SNPs and copy number variation.
    Nature genetics (7 September 2008)
    by Steven A A McCarroll, Finny G G Kuruvilla, Joshua M M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H H Shapero, Paul I W I de Bakker, Julian B B Maller, Andrew Kirby, Amanda L L Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J J Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W W Jones, Rich Rava, Mark J J Daly, Stacey B B Gabriel, David Altshuler
  • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    PNAS, Vol. 104, No. 31. (31 July 2007), pp. 12825-12830.
    by Wu Wei, John H Mccusker, Richard W Hyman, Ted Jones, Ye Ning, Zhiwei Cao, Zhenglong Gu, Dan Bruno, Molly Miranda, Michelle Nguyen, Julie Wilhelmy, Caridad Komp, Raquel Tamse, Xiaojing Wang, Peilin Jia, Philippe Luedi, Peter J Oefner, Lior David, Fred S Dietrich, Yixue Li, Ronald W Davis, Lars M Steinmetz
  • Transcript mapping with high-density oligonucleotide tiling arrays
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 1963-1970.
    by Wolfgang Huber, Joern Toedling, Lars M Steinmetz
  • Transcript normalization and segmentation of tiling array data.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 527-538.
    by G Zeller, SR Henz, S Laubinger, D Weigel, G Rätsch
  • High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays.
    Proc Natl Acad Sci U S A, Vol. 103, No. 12. (21 March 2006), pp. 4534-4539.
    by AE Urban, JO Korbel, R Selzer, T Richmond, A Hacker, GV Popescu, JF Cubells, R Green, BS Emanuel, MB Gerstein, SM Weissman, M Snyder
  • High-resolution mapping of meiotic crossovers and non-crossovers in yeast
    Nature (09 July 2008)
    by Eugenio Mancera, Richard Bourgon, Alessandro Brozzi, Wolfgang Huber, Lars M Steinmetz
  • A robust statistical method for case-control association testing with copy number variation.
    Nature genetics (7 September 2008)
    by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E E Hurles
  • Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome
    Proceedings of the National Academy of Sciences, Vol. 104, No. 24. (12 June 2007), pp. 10110-10115.
    by Jan O Korbel, Alexander E Urban, Fabian Grubert, Jiang Du, Thomas E Royce, Peter Starr, Guoneng Zhong, Beverly S Emanuel, Sherman M Weissman, Michael Snyder, Mark B Gerstein
    posted to human hmm genome cnv breakpoints by waszak on 2008-10-08 14:58:45 as ** along with 2 people caldavis oelemento
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
  • Unsupervised segmentation of continuous genomic data
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1424-1426.
    by Nathan Day, Andrew Hemmaplardh, Robert E Thurman, John A Stamatoyannopoulos, William S Noble
  • QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
    Nucleic Acids Res (27 March 2007)
    by Stefano Colella, Christopher Yau, Jennifer M M Taylor, Ghazala Mirza, Helen Butler, Penny Clouston, Anne S S Bassett, Anneke Seller, Christopher C C Holmes, Jiannis Ragoussis
  • Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
    Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1575-1584.
    by Daisuke Komura, Fan Shen, Shumpei Ishikawa, Karen R Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E Hurles, Charles Lee, Stephen W Scherer, Keith W Jones, Michael H Shapero, Jing Huang, Hiroyuki Aburatani
  • Mutational and selective effects on copy-number variants in the human genome.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by GM Cooper, DA Nickerson, EE Eichler
  • A high-resolution survey of deletion polymorphism in the human genome
    Nature Genetics, Vol. 38, No. 1. (04 December 2005), pp. 75-81.
    by Donald F Conrad, Daniel T Andrews, Nigel P Carter, Matthew E Hurles, Jonathan K Pritchard
  • Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome.
    Am J Hum Genet, Vol. 79, No. 2. (August 2006), pp. 275-290.
    by DP Locke, AJ Sharp, SA McCarroll, SD McGrath, TL Newman, Z Cheng, S Schwartz, DG Albertson, D Pinkel, DM Altshuler, EE Eichler
    posted to snp ld human hapmap genome cnv cnp by waszak on 2008-10-08 14:36:13 as ** along with 1 person lp2
  • Molecular mechanisms for constitutional chromosomal rearrangements in humans.
    Annual review of genetics, Vol. 34 (2000), pp. 297-329.
    by LG Shaffer, JR Lupski
    posted to sv human genome cytogenetics by waszak on 2008-10-08 14:34:43 as **
  • Copy Number Variants and Common Disorders: Filling the Gaps and Exploring Complexity in Genome-Wide Association Studies
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e190.
    by Xavier Estivill, Lluís Armengol
    posted to snp gwas genome cnv by waszak on 2008-10-08 14:32:56 as ** along with 2 people jfr giovanni
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    by
  • Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia
    Science (27 March 2008), 1155174.
    by Tom Walsh, Jon M Mcclellan, Shane E Mccarthy, Anjene M Addington, Sarah B Pierce, Greg M Cooper, Alex S Nord, Mary Kusenda, Dheeraj Malhotra, Abishek Bhandari, Sunday M Stray, Caitlin F Rippey, Patricia Roccanova, Vlad Makarov, B Lakshmi, Robert L Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E Eichler, Paul S Meltzer, Stanley F Nelson, Andrew B Singleton, Ming K Lee, Judith L Rapoport, Mary-Claire King, Jonathan Sebat
  • Diet and the evolution of human amylase gene copy number variation.
    Nat Genet (9 September 2007)
    by George H H Perry, Nathaniel J J Dominy, Katrina G G Claw, Arthur S S Lee, Heike Fiegler, Richard Redon, John Werner, Fernando A A Villanea, Joanna L L Mountain, Rajeev Misra, Nigel P P Carter, Charles Lee, Anne C C Stone
    posted to human disease cnv by waszak on 2008-10-08 14:27:55 as ** along with 5 people bpb balicea dchughes saru ajw
  • Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome
    Nature Genetics, Vol. 38, No. 9. (13 August 2006), pp. 1038-1042.
    by Andrew J Sharp, Sierra Hansen, Rebecca R Selzer, Ze Cheng, Regina Regan, Jane A Hurst, Helen Stewart, Sue M Price, Edward Blair, Raoul C Hennekam, Carrie A Fitzpatrick, Rick Segraves, Todd A Richmond, Cheryl Guiver, Donna G Albertson, Daniel Pinkel, Peggy S Eis, Stuart Schwartz, Samantha JL Knight, Evan E Eichler
    posted to human cnv cnp by waszak on 2008-10-08 14:26:09 as **
  • The Influence of CCL3L1 Gene-Containing Segmental Duplications on HIV-1/AIDS Susceptibility
    Science, Vol. 307, No. 5714. (04 March 2005), pp. 1434-1440.
    by Enrique Gonzalez, Hemant Kulkarni, Hector Bolivar, Andrea Mangano, Racquel Sanchez, Gabriel Catano, Robert J Nibbs, Barry I Freedman, Marlon P Quinones, Michael J Bamshad, Krishna K Murthy, Brad H Rovin, William Bradley, Robert A Clark, Stephanie A Anderson, Robert J O'Connell, Brian K Agan, Seema S Ahuja, Rosa Bologna, Luisa Sen, Matthew J Dolan, Sunil K Ahuja
    posted to hiv cnv aids by waszak on 2008-10-08 14:23:46 as ** along with 3 people mercaptan tkershaw vplagnol
  • alpha-Synuclein Locus Triplication Causes Parkinson's Disease
    Science, Vol. 302, No. 5646. (October 2003), 841.
    by AB Singleton
    posted to parkinson cnv by waszak on 2008-10-08 14:22:21 as **
  • Systematic assessment of copy number variant detection via genome-wide SNP genotyping.
    Nature genetics (7 September 2008)
    by Gregory M M Cooper, Troy Zerr, Jeffrey M M Kidd, Evan E E Eichler, Deborah A A Nickerson
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
  • Fine-scale structural variation of the human genome
    Nature Genetics, Vol. 37, No. 7. (15 May 2005), pp. 727-732.
    by Eray Tuzun, Andrew J Sharp, Jeffrey A Bailey, Rajinder Kaul, Anne V Morrison, Lisa M Pertz, Eric Haugen, Hillary Hayden, Donna Albertson, Daniel Pinkel, Maynard V Olson, Evan E Eichler
    posted to human cnv by waszak on 2008-10-08 13:51:54 as ** along with 4 people matthewsuderman bpb pcahan1 Neeperando
  • Large-Scale Copy Number Polymorphism in the Human Genome
    Science, Vol. 305, No. 5683. (23 July 2004), pp. 525-528.
    by Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Par Lundin, Susanne Maner, Hillary Massa, Megan Walker, Maoyen Chi, Nicholas Navin, Robert Lucito, John Healy, James Hicks, Kenny Ye, Andrew Reiner, Conrad C Gilliam, Barbara Trask, Nick Patterson, Anders Zetterberg, Michael Wigler
  • Expression of endostatin in human choroidal neovascular membranes secondary to age-related macular degeneration.
    Experimental eye research, Vol. 83, No. 2. (August 2006), pp. 329-338.
    posted to cnv by waszak on 2008-10-08 13:23:51 as **
  • Implications of bevacizumab on VEGF and endostatin in human choroidal neovascularization.
    The British journal of ophthalmology (6 October 2008)
    by Olcay Tatar, Kei Shinoda, Edwin Kaiserling, Carl Claes, Claus Eckardt, Tillmann Eckert, Vicky Boeyden, Grazia Pertile, Efdal Yoeruek, Peter Szurman, Karl U U Bartz-Schmidt, Salvatore Grisanti
    posted to microarray cnv by waszak on 2008-10-08 13:21:49 as **
  • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423.
    by David Benovoy, Tony Kwan, Jacek Majewski
  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
    Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853.
    by Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E Hurles, Emmanouil T Dermitzakis
  • Modeling of DNA microarray data by using physical properties of hybridization
    Proceedings of the National Academy of Sciences, Vol. 100, No. 13. (24 June 2003), pp. 7575-7580.
    by GA Held, G Grinstein, Y Tu
    posted to microarray hybridization by waszak on 2008-09-29 15:25:43 as ** along with 1 person talponer
  • A probabilistic generative model for GO enrichment analysis
    Nucl. Acids Res. (1 August 2008), gkn434.
    by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J Nau, Ziv Bar-Joseph
  • Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection
    BMC Veterinary Research, Vol. 4 (02 June 2008), 18.
    by Ylva, Laurelea Donaldson, Christian P Gray, Tony Vuocolo, Roger Pearson, Antonio Reverter, Keren A Byrne, Paul Sheehy, Ross Windon, Ross L Tellam
    posted to bovine infection microarray saureus by waszak on 2008-08-27 01:30:02 as **
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
  • Microbial patterns signaling via Toll-like receptors 2 and 5 contribute to epithelial repair, growth and survival.
    PLoS ONE, Vol. 3, No. 1. (2008)
    by R Shaykhiev, J Behr, R Bals
    posted to saureus tlr by waszak on 2008-08-18 00:32:44 as **
  • The Fibronectin-Binding Proteins of Staphylococcus aureus May Promote Mammary Gland Colonization in a Lactating Mouse Model of Mastitis
    Infect. Immun., Vol. 71, No. 4. (1 April 2003), pp. 2292-2295.
    by Eric Brouillette, Brian G Talbot, Francois Malouin
    posted to internalization invasion mastitis saureus by waszak on 2008-08-17 23:35:19 as **
  • Mechanisms of Internalization of Staphylococcus aureus by Cultured Human Osteoblasts
    Infect. Immun., Vol. 67, No. 5. (1 May 1999), pp. 2677-2681.
    by Marc Jevon, Chuanbin Guo, Beechai Ma, Nicky Mordan, Sean P Nair, Malcolm Harris, Brian Henderson, George Bentley, Sajeda Meghji
    posted to infection internalization invasion mastitis saureus by waszak on 2008-08-17 15:53:37 as **
  • xMAN: extreme MApping of OligoNucleotides
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Wei Li, Jason Carroll, Myles Brown, Shirley X Liu
    posted to algorithm microarray python by waszak on 2008-08-16 18:50:45 as ** along with 2 people umit GeeSharpMinor
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
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