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vrichs library [222 articles]

Neue Artikel in vrichs Bibliothek.
  • Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers
    Environmental Microbiology, Vol. 6, No. 1. (2004), pp. 19-34.
    by Purificacion Lopez-Garcia, Celine Brochier, David Moreira, Francisco Rodriguez-Valera
    posted to hgt deep_ant crens archaea antarctic by vrich on 2008-05-19 22:27:18 as ** along with 1 person jmeppley
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
    posted to hot depth_profile community_genomics by vrich on 2008-05-19 22:21:35 as ** along with 9 people and 2 groups mjetten mcox eoghanharr dayjm jmeppley michC bluto jdelcampo beatrizfernandez microbiology_nijmegen Microbial-Ecology
  • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel.
    Appl Environ Microbiol, Vol. 63, No. 1. (January 1997), pp. 50-56.
    by R Massana, AE Murray, CM Preston, EF DeLong
    posted to santa_barbara_chanel eurys crens archaea by vrich on 2008-05-19 22:02:30 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front
    FEMS Microbiology Ecology, Vol. 36, No. 2-3. (2001), pp. 193-202.
    by Purificacion L García, Arantxa L Lopez, David Moreira, Francisco R Valera
    posted to zd0417 sar406 sar324 polar deep_sea antarctic by vrich on 2008-05-19 00:40:28 as **
  • Rapid turnover of dissolved DMS and DMSP by defined bacterioplankton communities in the stratified euphotic zone of the North Sea
    Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 49, No. 15. (2002), pp. 3017-3038.
    by Mikhail V Zubkov, Bernhard M Fuchs, Stephen D Archer, Ronald P Kiene, Rudolf Amann, Peter H Burkill
    posted to zd0405 north_sea dmsp by vrich on 2008-05-18 22:27:40 as ** along with 2 people and 1 group Stenuite timothee African_Lakes_Limnology
  • Different SAR86 subgroups harbour divergent proteorhodopsins
    Environmental Microbiology, Vol. 6, No. 9. (2004), pp. 903-910.
    by Gazalah Sabehi, Oded Beja, Marcelino T Suzuki, Christina M Preston, Edward F Delong
    posted to sar86 pr monterey_bay by vrich on 2008-05-18 21:14:17 as **
  • Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater
    Environmental Microbiology, Vol. 9, No. 8. (August 2007), pp. 2025-2037.
    by Mou, Xiaozhen, Hodson, E Robert, Moran, Mary Ann
    posted to sar86 sar116 sar11 photoheterotrophy om60 om185 heterotrophy doc by vrich on 2008-05-18 21:13:37 as **
  • Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas
    ISME J, Vol. 1, No. 1. (0000), pp. 48-55.
    by Gazalah Sabehi, Benjamin C Kirkup, Mira Rozenberg, Noga Stambler, Martin F Polz, Oded Beja
    posted to sargasso pr mediterranean by vrich on 2008-05-18 21:12:06 as **
  • Culturability and In Situ Abundance of Pelagic Bacteria from the North Sea
    Appl. Environ. Microbiol., Vol. 66, No. 7. (1 July 2000), pp. 3044-3051.
    by Heike Eilers, Jakob Pernthaler, Frank O Glockner, Rudolf Amann
    posted to sar86 by vrich on 2008-05-18 21:11:05 as **
  • Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
    Environmental Microbiology, Vol. 3, No. 5. (2001), pp. 323-331.
    by Marcelino T Suzuki, Oded Beja, Lance T Taylor, Edward F Delong
    posted to monterey_bay by vrich on 2008-05-18 21:10:47 as **
  • Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
    FEMS Microbiology Ecology, Vol. 33, No. 3. (2000), pp. 219-232.
    by Michael S Rappe, Kevin Vergin, Stephen J Giovannoni
    posted to coastal_vs_open_ocean by vrich on 2008-05-18 21:10:16 as **
  • Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.
    Science, Vol. 289, No. 5486. (15 September 2000), pp. 1902-1906.
    by O Béjà, L Aravind, EV Koonin, MT Suzuki, A Hadd, LP Nguyen, SB Jovanovich, CM Gates, RA Feldman, JL Spudich, EN Spudich, EF DeLong
    posted to sar86 pr 31a08 by vrich on 2008-05-18 21:09:40 as ** along with 1 person bluto
  • Environmental Genome Shotgun Sequencing of the Sargasso Sea
    Science, Vol. 304, No. 5667. (02 April 2004), pp. 66-74.
    by Craig C Venter, Karin Remington, John F Heidelberg, Aaron L Halpern, Doug Rusch, Jonathan A Eisen, Dongying Wu, Ian Paulsen, Karen E Nelson, William Nelson, Derrick E Fouts, Samuel Levy, Anthony H Knap, Michael W Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O Smith
    posted to community_genomics by vrich on 2008-05-18 21:08:55 as ** along with 15 people and 1 group pradiptaray mcox knaseanka eoghanharr johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo azazello beatrizfernandez wenhan Microbial-Ecology
  • New insights into metabolic properties of marine bacteria encoding proteorhodopsins.
    PLoS Biol, Vol. 3, No. 8. (August 2005)
    by G Sabehi, A Loy, KH Jung, R Partha, JL Spudich, T Isaacson, J Hirschberg, M Wagner, O Béjà
    posted to sar86 pr by vrich on 2008-05-18 21:08:34 as ** along with 1 person dayjm
  • Estimating the Growth Rate of Slowly Growing Marine Bacteria from RNA Content
    Appl. Environ. Microbiol., Vol. 59, No. 8. (1 August 1993), pp. 2594-2601.
    by PF Kemp, S Lee, J Laroche
    posted to rrna ribosome by vrich on 2008-05-18 02:50:40 as **
  • Stocks and dynamics of bacterioplankton in the northwestern Sargasso Sea
    Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 43, No. 2-3. (1996), pp. 491-515.
    by Craig A Carlson, Hugh W Ducklow, Thomas D Sleeter
    posted to bats by vrich on 2008-05-17 00:23:22 as **
  • Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea
    Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 48, No. 8-9. (2001), pp. 1983-2003.
    by Michele D Durand, Robert J Olson, Sallie W Chisholm
    posted to phytoplankton bats by vrich on 2008-05-16 23:47:38 as ** along with 1 person and 1 group Stenuite African_Lakes_Limnology
  • Annual variability of phytoplankton and bacteria in the subtropical North Pacific Ocean at Station ALOHA during the 1991-1994 ENSO event
    Deep Sea Research Part I: Oceanographic Research Papers, Vol. 44, No. 2. (February 1997), pp. 167-192.
    by Lisa Campbell, Hongbin Liu, Hector A Nolla, Daniel Vaulot
    posted to phytoplankton hot el_nino by vrich on 2008-05-16 23:46:42 as ** along with 1 person and 1 group Stenuite African_Lakes_Limnology
  • Contribution of Aerobic Photoheterotrophic Bacteria to the Carbon Cycle in the Ocean
    Science, Vol. 292, No. 5526. (29 June 2001), pp. 2492-2495.
    by Zbigniew S Kolber, Gerald F Plumley, Andrew S Lang, Thomas J Beatty, Robert E Blankenship, Cindy L Vandover, Costantino Vetriani, Michal Koblizek, Christopher Rathgeber, Paul G Falkowski
    posted to photoheterotrophy ocean c_cycle aap by vrich on 2008-05-16 22:19:12 as **
  • Bacterial photosynthesis in surface waters of the open ocean
    Nature, Vol. 407, No. 6801. (2000), pp. 177-179.
    by ZS Kolber, CL Van Dover, RA Niederman, PG Falkowski
    posted to discovery aap by vrich on 2008-05-16 22:12:31 as **
  • Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes
    Environmental Microbiology, Vol. 9, No. 6. (June 2007), pp. 1464-1475.
    by Yutin, Natalya, Suzuki, T Marcelino, Teeling, Hanno, Weber, Marc, Venter, J Craig, Rusch, B Douglas, Beja, Oded
    posted to community_genomics aap by vrich on 2008-05-16 21:35:51 as ** along with 1 person jmeppley
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to whale silage community_genomics by vrich on 2008-05-16 21:34:22 as ** along with 9 people and 2 groups mjetten sanchezbuelna mcox bluto jmeppley AaronDarling azazello wenhan sgoetz microbiology_nijmegen anammox
  • Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: insights from metagenomics and environmental genomics
    Environmental Microbiology, Vol. 7, No. 12. (December 2005), pp. 2027-2033.
    by Natalya Yutin, Oded Beja
    posted to community_genomics aap by vrich on 2008-05-16 21:33:59 as ** along with 2 people and 1 group wxg119 beatrizfernandez Microbial-Ecology
  • Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges
    Applied Microbiology and Biotechnology, Vol. 75, No. 1. (28 May 2007), pp. 11-20.
    by Jonathan Kennedy, Julian Marchesi, Alan Dobson
    posted to sponge ocean community_genomics biotech by vrich on 2008-05-16 21:31:43 as **
  • Viral communities associated with healthy and bleaching corals
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Kristen L Marhaver, Robert A Edwards, Forest Rohwer
    posted to viral coral community_genomics by vrich on 2008-05-16 21:06:32 as **
  • Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???.
    by Linda Wegley, Robert Edwards, Beltran Rodriguez-Brito, Hong Liu, Forest Rohwer
    posted to community_genomics by vrich on 2008-05-16 20:56:59 as ** along with 1 person bluto
  • Pigment Markers for Phytoplankton Production
    Marine Organic Matter: Biomarkers, Isotopes and DNA (2006), pp. 71-104.
    by Simon Wright, S Jeffrey
    posted to pigments phytoplankton by vrich on 2008-05-16 16:26:44 as **
  • Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistry
    Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 48, No. 8-9. (2001), pp. 1405-1447.
    by Deborah K Steinberg, Craig A Carlson, Nicholas R Bates, Rodney J Johnson, Anthony F Michaels, Anthony H Knap
    posted to oceans bats by vrich on 2008-05-16 16:21:31 as **
  • Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms
    Science, Vol. 316, No. 5827. (18 May 2007), pp. 1021-1026.
    by Dennis J Mcgillicuddy, Laurence A Anderson, Nicholas R Bates, Thomas Bibby, Ken O Buesseler, Craig A Carlson, Cabell S Davis, Courtney Ewart, Paul G Falkowski, Sarah A Goldthwait, Dennis A Hansell, William J Jenkins, Rodney Johnson, Valery K Kosnyrev, James R Ledwell, Qian P Li, David A Siegel, Deborah K Steinberg
    posted to ocean bats by vrich on 2008-05-16 16:13:08 as ** along with 2 people mblwhoi mullonc
  • Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
    ISME J, Vol. 1, No. 4. (5 July 2007), pp. 361-371.
    by Ulrich Stingl, Harry J Tripp, Stephen J Giovannoni
    posted to sar11 htcc bats by vrich on 2008-05-16 16:12:45 as **
  • The Hawaii Ocean Time-series (HOT) program: Background, rationale and field implementation
    Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 43, No. 2-3. (1996), pp. 129-156.
    by David M Karl, Roger Lukas
    posted to hot hawaii by vrich on 2008-05-16 15:51:04 as **
  • Emergent biogeography of microbial communities in a model ocean.
    Science, Vol. 315, No. 5820. (30 March 2007), pp. 1843-1846.
    by MJ Follows, S Dutkiewicz, S Grant, SW Chisholm
    posted to prochlorococcus oceans modeling by vrich on 2008-05-16 15:28:54 as ** along with 6 people and 2 groups jmeppley jdelcampo nurban emayorga cursonivel1 andrewirwin Microbial-Ecology cursonivel1
  • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    Nature, Vol. 440, No. 7085., pp. 790-794.
    by Marc Strous, Eric Pelletier, Sophie Mangenot, Thomas Rattei, Angelika Lehner, Michael W Taylor, Matthias Horn, Holger Daims, Delphine Bartol-Mavel, Patrick Wincker, Valã©rie Barbe, Nuria Fonknechten, David Vallenet, Bã©atrice Segurens, Chantal Schenowitz-Truong, Claudine Mã©digue, Astrid Collingro, Berend Snel, Bas E Dutilh, Huub, Chris van der Drift, Irina Cirpus, Katinka T van de Pas-Schoonen, Harry R Harhangi, Laura van Niftrik, Markus Schmid, Jan Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A Huynen, Hans-Werner Mewes, Jean Weissenbach, Mike SM Jetten, Michael Wagner, Denis Le Paslier
    posted to community_genomics anammox by vrich on 2008-05-16 15:25:50 as ** along with 1 person and 2 groups kinestetika anammox microbiology_nijmegen
  • Marine microorganisms and global nutrient cycles
    Nature, Vol. 437, No. 7057. (14 September 2004), pp. 349-355.
    by Kevin R Arrigo
    posted to oceans n_fixation n_cycle anammox by vrich on 2008-05-16 15:23:27 as ** along with 2 people and 2 groups Stenuite jdelcampo African_Lakes_Limnology Microbial-Ecology
  • N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica.
    Nature, Vol. 422, No. 6932. (10 April 2003), pp. 606-608.
    by T Dalsgaard, DE Canfield, J Petersen, B Thamdrup, J Acuña-González
    posted to anammox ammonia_oxidation by vrich on 2008-05-16 15:17:18 as ** along with 1 person and 2 groups kinestetika anammox microbiology_nijmegen
  • Anaerobic ammonium oxidation by anammox bacteria in the Black Sea.
    Nature, Vol. 422, No. 6932. (10 April 2003), pp. 608-611.
    by MM Kuypers, AO Sliekers, G Lavik, M Schmid, BB Jørgensen, JG Kuenen, JS Sinninghe Damsté, M Strous, MS Jetten
    posted to anammox ammonia_oxidation by vrich on 2008-05-16 15:15:06 as ** along with 1 person and 2 groups kinestetika anammox microbiology_nijmegen
  • Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray
    Environmental Microbiology, Vol. 8, No. 1. (January 2006), pp. 126-140.
    by Josh D Neufeld, William W Mohn, Victor de Lorenzo
    posted to microarray by vrich on 2008-05-16 04:57:21 as **
  • A nifH-based Oligonucleotide Microarray for Functional Diagnostics of Nitrogen-fixing Microorganisms
    Microbial Ecology, Vol. 53, No. 3. (April 2007), pp. 456-470.
    by Zhang, Lei, Hurek, Thomas, Reinhold-Hurek, Barbara
    posted to nifh n_fixation n_cycle microarray fga by vrich on 2008-05-16 04:22:48 as **
  • Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray
    Environmental Microbiology, Vol. 9, No. 10. (October 2007), pp. 2522-2538.
    by Ward, B Bess, Eveillard, Damien, Kirshtein, D Julie, Nelson, D Joshua, Voytek, A Mary, Jackson, A George
    posted to sargasso n_cycle microarray fga amoa ammonia_oxidation by vrich on 2008-05-16 04:11:56 as **
  • Analysis of methanotrophic communities in landfill biofilters using diagnostic microarray
    Environmental Microbiology, Vol. 10, No. 5. (May 2008), pp. 1175-1188.
    by Gebert, Julia, Stralis-Pavese, Nancy, Alawi, Mashal, Bodrossy, Levente
    posted to pmoa microarray methanotrophs fga by vrich on 2008-05-16 03:57:31 as **
  • Novel Microarray Design Strategy To Study Complex Bacterial Communities
    Appl. Environ. Microbiol., Vol. 74, No. 6. (15 March 2008), pp. 1876-1885.
    by Antoine Huyghe, Patrice Francois, Yvan Charbonnier, Manuela Tangomo-Bento, Eve-Julie Bonetti, Bruce J Paster, Ignacio Bolivar, Denise Baratti-Mayer, Didier Pittet, Jacques Schrenzel, And
    posted to phylochip oral_microbiota microarray by vrich on 2008-05-16 03:02:32 as **
  • Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays.
    Applied and environmental microbiology, Vol. 69, No. 4. (April 2003), pp. 2377-2382.
    by S El Fantroussi, H Urakawa, AE Bernhard, JJ Kelly, PA Noble, H Smidt, GM Yershov, DA Stahl
    posted to thermal_dissociation microarray by vrich on 2008-05-16 02:06:10 as ** along with 1 person mcox
  • Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification
    Appl. Environ. Microbiol., Vol. 72, No. 7. (1 July 2006), pp. 4931-4941.
    by Liyou Wu, Xueduan Liu, Christopher W Schadt, Jizhong Zhou
    posted to microarray mda geochip by vrich on 2008-05-16 00:34:51 as **
  • Microarray-Based Analysis of Microbial Community RNAs by Whole-Community RNA Amplification
    Appl. Environ. Microbiol., Vol. 73, No. 2. (1 January 2007), pp. 563-571.
    by Haichun Gao, Zamin K Yang, Terry J Gentry, Liyou Wu, Christopher W Schadt, Jizhong Zhou
    posted to microarray geochip by vrich on 2008-05-16 00:32:13 as **
  • The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Shibu Yooseph, Granger Sutton, Douglas B B Rusch, Aaron L L Halpern, Shannon J J Williamson, Karin Remington, Jonathan A A Eisen, Karla B B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S S Miller, Huiying Li, Susan T T Mashiyama, Marcin P P Joachimiak, Christopher van Belle, John-Marc M Chandonia, David A A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J J Raphael, Vineet Bafna, Robert Friedman, Steven E E Brenner, Adam Godzik, David Eisenberg, Jack E E Dixon, Susan S S Taylor, Robert L L Strausberg, Marvin Frazier, J Craig C Venter
    posted to community_genomics by vrich on 2008-05-15 22:01:13 as ** along with 4 people and 2 groups mjetten jmeppley kaspermunch michC microbiology_nijmegen Bioinformatics
  • Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat
    PLoS ONE
    by Martin-Cuadrado
    posted to oceans community_genomics by vrich on 2008-05-15 22:01:03 as **
  • Nitrogen fixation by Trichodesmium spp.: An important source of new nitrogen to the tropical and subtropical North Atlantic Ocean
    Global Biogeochemical Cycles, Vol. 19 (8 June 2005), GB2024.
    by Douglas G Capone, James A Burns, Joseph P Montoya, Ajit Subramaniam, Claire Mahaffey, Troy Gunderson, Anthony F Michaels, Edward J Carpenter
    posted to trichodesmium n_cycle by vrich on 2008-05-15 21:49:44 as **
  • Spatial coupling of nitrogen inputs and losses in the ocean
    Nature, Vol. 445, No. 7124., pp. 163-167.
    by Curtis Deutsch, Jorge L Sarmiento, Daniel M Sigman, Nicolas Gruber, John P Dunne
    posted to n_cycle by vrich on 2008-05-15 21:49:26 as **
  • Proteorhodopsins: an array of physiological roles?
    Nature Reviews Microbiology
    posted to pr by vrich on 2008-05-15 21:46:20 as **
  • Low nitrate:phosphate ratios in the global ocean
    Nature, Vol. 387, No. 6635. (19 June 1997), pp. 793-796.
    by T Tyrrell, CS Law
    posted to np n_cycle modeling by vrich on 2008-05-15 21:45:39 as **
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