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ugengmas library [89 articles]

Neue Artikel in ugengmas Bibliothek.
  • Combining dependent P-values
    Statistics & Probability Letters, Vol. 60, No. 2. (15 November 2002), pp. 183-190.
    by James T Kost, Michael P Mcdermott
    posted to metapval2002 by ugengma on 2007-12-14 13:40:55 as ***
  • A systematic comparison of methods for combining p-values from independent tests
    Computational Statistics & Data Analysis, Vol. 47, No. 3. (1 October 2004), pp. 467-485.
    by Thomas M Loughin
    posted to metaloughin by ugengma on 2007-12-12 10:56:21 as **
  • Significance analysis of time course microarray experiments.
    Proc Natl Acad Sci U S A, Vol. 102, No. 36. (6 September 2005), pp. 12837-12842.
    by JD Storey, W Xiao, JT Leek, RG Tompkins, RW Davis
    posted to storeytc by ugengma on 2007-10-12 15:37:20 as read along with 2 people jo_davies Montrachet
  • Shrinkage estimators for covariance matrices.
    Biometrics, Vol. 57, No. 4. (December 2001), pp. 1173-1184.
    by MJ Daniels, RE Kass
    posted to danielskasscov by ugengma on 2007-10-12 15:09:15 as read
  • Significance analysis of microarrays applied to the ionizing radiation response.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121.
    by VG Tusher, R Tibshirani, G Chu
    posted to sam by ugengma on 2007-10-12 15:07:43 as read along with 9 people renatomilani askrajiv miguel jen_drake gpalidwor olympos ccr incovoma shikin
  • Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes.
    Proc Natl Acad Sci U S A, Vol. 100, No. 18. (2 September 2003), pp. 10146-10151.
    by Z Bar-Joseph, G Gerber, I Simon, DK Gifford, TS Jaakkola
    posted to tcbarjoseph by ugengma on 2007-10-11 12:23:08 as **
  • Statistical significance analysis of longitudinal gene expression data.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1628-1635.
    by X Guo, H Qi, CM Verfaillie, W Pan
    posted to tcguo by ugengma on 2007-10-11 10:09:09 as read
  • Statistical tests for identifying differentially expressed genes in time-course microarray experiments.
    Bioinformatics, Vol. 19, No. 6. (12 April 2003), pp. 694-703.
    by T Park, SG Yi, S Lee, SY Lee, DH Yoo, JI Ahn, YS Lee
    posted to tcpark by ugengma on 2007-10-11 10:07:03 as *** along with 1 person textoris
  • maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1096-1102.
    by Ana Conesa, Maria J Nueda, Manuel Talon
    posted to masigpro by ugengma on 2007-10-11 10:00:00 as *** along with 2 people sgoetz talponer
  • Translational repression by RNA-binding protein TIAR.
    Mol Cell Biol, Vol. 26, No. 7. (April 2006), pp. 2716-2727.
    by K Mazan-Mamczarz, A Lal, JL Martindale, T Kawai, M Gorospe
    posted to gse1440 by ugengma on 2007-10-03 12:11:23 as ***
  • When should one subtract background fluorescence in two color microarrays?
    Biostatistics (12 December 2006)
    by Robert B B Scharpf, Christine A A Iacobuzio-Donahue, Julie B B Sneddon, Giovanni Parmigiani
    posted to background by ugengma on 2007-09-25 11:57:42 as **** along with 3 people jfr rdiaz shigepong
  • Conditional Rejection Probabilities of Student's <I>t</I>-test and Design Adaptations
    Biometrical Journal, Vol. 46, No. 4. (2004), pp. 389-403.
    by Martin Posch, Nina Timmesfeld, Franz König, Hans-Helge Müller
    posted to condrrejectprobattest by ugengma on 2007-08-29 09:44:10 as read
  • Semiparametric Estimation of a Two-component Mixture Model where One Component is known
    Scandinavian Journal of Statistics, Vol. 33, No. 4. (December 2006), pp. 733-752.
    by Laurent Bordes, Celine Delmas, Pierre Vandekerkhove
    posted to semiparambordesduval by ugengma on 2007-08-28 14:24:47 as read
  • Discovering gene expression patterns in Time Course Microarray Experiments by ANOVA-SCA.
    Bioinformatics (22 May 2007)
    by María José J Nueda, Ana Conesa, Johan A A Westerhuis, Huub C J C Hoefsloot, Age K K Smilde, Manuel Talón, Alberto Ferrer
    posted to anovascatimecourse by ugengma on 2007-08-08 12:55:45 as *** along with 4 people rvosa shigepong ghattem sgoetz
  • GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.
    Bioinformatics (12 May 2007)
    by Sean Davis, Paul S S Meltzer
    posted to geoquery by ugengma on 2007-08-08 12:53:05 as *** along with 6 people bertelsen ablejec zhouyu giovenko jyuh jfr
  • Interim analyses with repeated measurements in a sequential clinical trial
    Biometrika, Vol. 77, No. 2. (1 June 1990), pp. 359-364.
    by LJ Wei, John Q Su, John M Lachin
    posted to repeatedmeasuresseqan by ugengma on 2007-07-19 14:51:00 as read
  • Sample size determination in microarray experiments for class comparison and prognostic classification
    Biostatistics, Vol. 6, No. 1., 27.
    by Kevin Dobbin, Richard Simon
    posted to samplesizeclassifcparpredict by ugengma on 2007-07-19 14:48:20 as read along with 2 people aviad_work cberry
  • A global test for groups of genes: testing association with a clinical outcome.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 93-99.
    by JJ Goeman, SA van de Geer, F de Kort, HC van Houwelingen
    posted to goemantest by ugengma on 2007-07-19 14:34:54 as read along with 2 people and 1 group dragonrez ealloza BioinfoCIPF
  • Sample size calculation for multiple testing in microarray data analysis
    Biostatistics, Vol. 6, No. 1., 157.
    by Sin-Ho Jung
    posted to samplesizemulttest by ugengma on 2007-07-19 14:21:29 as read
  • Sample size planning for developing classifiers using high-dimensional DNA microarray data
    Biostatistics, Vol. 8, No. 1. (January 2007), pp. 101-117.
    by Dobbin, K Kevin, Simon, M Richard
    posted to samplesizeclassif by ugengma on 2007-07-19 14:19:00 as read along with 1 person Natowicz
  • Microarray expression profiling identifies genes with altered expression in HDL-deficient mice.
    Genome Res, Vol. 10, No. 12. (December 2000), pp. 2022-2029.
    by MJ Callow, S Dudoit, EL Gong, TP Speed, EM Rubin
    posted to apoai by ugengma on 2007-07-09 15:48:23 as read along with 1 person mcristinaconti
  • Linear models and empirical bayes methods for assessing differential expression in microarray experiments.
    Stat Appl Genet Mol Biol, Vol. 3, No. 1. (2004)
    by GK Smyth
    posted to no-tag by ugengma on 2007-07-09 12:28:33 as ** along with 5 people RMGraze maryee mayercd justescaped heliopais
  • Power and sample size for clinical trials when efficacy is required in multiple endpoints: application to an Alzheimer's treatment trial.
    Clin Trials, Vol. 2, No. 5. (2005), pp. 387-393.
    by C Xiong, K Yu, F Gao, Y Yan, Z Zhang
    posted to endpointsxiong by ugengma on 2007-07-09 10:06:57 as read
  • Group sequential testing in clinical trials with multivariate observations: a review.
    Stat Med, Vol. 13, No. 2. (30 January 1994), pp. 101-111.
    by JW Lee
    posted to lee94 by ugengma on 2007-07-09 10:04:43 as read
  • VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data
    Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 502-508.
    by Paul Delmar, Stephane Robin, Jean J Daudin
    posted to varmixt2005 by ugengma on 2007-07-09 09:36:56 as read
  • A simple method for assessing sample sizes in microarray experiments.
    BMC Bioinformatics, Vol. 7 (2006)
    by R Tibshirani
    posted to samplesizetibshirani by ugengma on 2007-06-28 17:26:10 as ** along with 3 people and 1 group bertelsen jen_drake gpalidwor Bioinformatics
  • An Overview of Statistical Approaches for Adaptive Designs and Design Modifications
    Biometrical Journal, Vol. 48, No. 4. (2006), pp. 507-520.
    by Helmut Schäfer, Nina Timmesfeld, Hans-Helge Müller
    posted to overviewschaefer by ugengma on 2007-06-14 11:35:48 as read
  • Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 531-537.
    by T Golub, D Slonim, P Tamayo, C Huard, M Gaasenbeek, J Mesirov, H Coller, M Loh, J Downing, M Caligiuri, C Bloomfield, E Lander
    posted to golub by ugengma on 2007-06-13 18:35:54 as ** along with 10 people and 1 group raiyar balajis sdvillal archroad giovanni santhosh wtribbey jo_davies akastrin zchen GeschwindLab
  • False discovery rate, sensitivity and sample size for microarray studies
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3017-3024.
    by Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner
    posted to fdrsenspawitan by ugengma on 2007-06-06 16:58:09 as ** along with 2 people shikin wirawan
  • Combining multiple microarray studies and modeling interstudy variation.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by JK Choi, U Yu, S Kim, OJ Yoo
    posted to metachoi by ugengma on 2007-06-01 09:01:59 as ***
  • Combining adaptive designs with control of the false discovery rate--a generalized definition for a global p-value.
    Biom J, Vol. 49, No. 1. (February 2007), pp. 94-106.
    by A Victor, G Hommel
    posted to largeendpointsglobphommel by ugengma on 2007-05-31 18:39:56 as read
  • Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays
    BMC Genomics, Vol. 8 (09 April 2007), 96.
    by Ann M Hess, Hari K Iyer
    posted to combinpvalhess by ugengma on 2007-05-31 18:25:23 as **** along with 1 person jfr
  • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    PNAS, Vol. 101, No. 25. (22 June 2004), pp. 9309-9314.
    by Daniel R Rhodes, Jianjun Yu, K Shanker, Nandan Deshpande, Radhika Varambally, Debashis Ghosh, Terrence Barrette, Akhilesh Pandey, Arul M Chinnaiyan
    posted to metapvalrhodes2004 by ugengma on 2007-05-30 19:47:33 as ** along with 2 people and 1 group srp33 hawkeyehammer Indigene
  • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433.
    by Daniel R Rhodes, Terrence R Barrette, Mark A Rubin, Debashis Ghosh, Arul M Chinnaiyan
    posted to metapvalrhodes by ugengma on 2007-05-30 19:38:47 as ** along with 4 people and 1 group kengg srp33 hawkeyehammer waghsk Indigene
  • Comparative microarray analysis.
    OMICS, Vol. 10, No. 3. (2006), pp. 381-397.
    by O Larsson, K Wennmalm, R Sandberg
    posted to metalarsson by ugengma on 2007-05-29 18:43:19 as *** along with 1 person jfr
  • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    Journal of the Royal Statistical Society, Vol. 57 (1995), pp. 289-300.
    by Yoav Benjamini, Yosef Hochberg
    posted to bh by ugengma on 2007-05-29 18:15:48 as read along with 13 people and 2 groups isimpson dragonrez jyuh RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon amsantos rschulz Bioinformatics Regulomics_UCHSC
  • A mixture model approach for the analysis of microarray gene expression data
    Computational Statistics & Data Analysis, Vol. 39, No. 1. (28 March 2002), pp. 1-20.
    by David B Allison, Gary L Gadbury, Moonseong Heo, Jose R Fernandez, Cheol-Koo Lee, Tomas A Prolla, Richard Weindruch
    posted to allisonbeta by ugengma on 2007-05-29 17:53:51 as **
  • Adaptive Sample Size Calculations in Group Sequential Trials
    Biometrics, Vol. 55, No. 4. (1999), pp. 1286-1290.
    by Walter Lehmacher, Gernot Wassmer
    posted to lehmacherwassmer by ugengma on 2007-05-29 17:18:00 as read
  • A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays.
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1608-1615.
    by GJ McLachlan, RW Bean, LB Jones
    posted to mclachlannormmixt by ugengma on 2007-05-29 16:39:18 as read
  • The PowerAtlas: a power and sample size atlas for microarray experimental design and research
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Grier Page, Jode Edwards, Gary Gadbury, Prashanth Yelisetti, Jelai Wang, Prinal Trivedi, David Allison
    posted to poweratlas by ugengma on 2007-05-29 16:23:26 as read along with 2 people jyuh natstreet
  • Estimating the proportion of true null hypotheses, with application to DNA microarray data
    Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 67, No. 4. (September 2005), pp. 555-572.
    by Mette Langaas, Bo H Lindqvist, Egil Ferkingstad
    posted to propnullhyplangaas by ugengma on 2007-05-29 14:53:21 as read
  • Inference on Multiple Endpoints in Clinical Trials with Adaptive Interim Analyses
    Biometrical Journal, Vol. 41, No. 3. (1999), pp. 261-277.
    by Meinhard Kieser, Peter Bauer, Walter Lehmacher
    posted to multendpointskieser by ugengma on 2007-05-29 12:34:44 as read
  • Design of Group Sequential Clinical Trials with Multiple Endpoints
    Journal of the American Statistical Association, Vol. 84, No. 407. (1989), pp. 776-779.
    by Dei-In Tang, Clare Gnecco, Nancy L Geller
    posted to multendpointstang by ugengma on 2007-05-29 12:27:33 as read
  • An overview of group sequential methods in longitudinal clinical trials.
    Stat Methods Med Res, Vol. 9, No. 5. (October 2000), pp. 497-515.
    by B Spiessens, E Lesaffre, G Verbeke, K Kim, DL DeMets
    posted to overviewspiessens by ugengma on 2007-05-29 12:04:33 as read
  • A 25-year review of sequential methodology in clinical studies
    Statistics in Medicine, Vol. 26, No. 2. (2007), pp. 237-252.
    by Susan Todd
    posted to overviewtodd by ugengma on 2007-05-29 11:50:29 as read along with 1 person jyuh
  • Sequential methods and group sequential designs for comparative clinical trials.
    Fundam Clin Pharmacol, Vol. 17, No. 5. (October 2003), pp. 505-516.
    by V Sébille, E Bellissant
    posted to overviewbellissant by ugengma on 2007-05-29 11:48:47 as read
  • P-values for group sequential testing
    Biometrika, Vol. 82, No. 3. (1 September 1995), pp. 650-654.
    by Myron N Chang, Lawrence A Gould, Steven M Snapinn
    posted to pvalnotunif by ugengma on 2007-05-29 10:35:23 as read
  • Pooling mRNA in microarray experiments and its effect on power
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1217-1224.
    by Wuyan Zhang, Alicia Carriquiry, Dan Nettleton, Jack C Dekkers
    posted to pooling by ugengma on 2007-05-28 11:29:05 as * along with 4 people jyuh jfr rmk ptrobajo
  • A mixture model approach to the tests of concordance and discordance between two large-scale experiments with two-sample groups
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1243-1250.
    by Yinglei Lai, Bao-Ling Adam, Robert Podolsky, Jin-Xiong She
    posted to concordance by ugengma on 2007-05-28 11:28:06 as * along with 1 person jfr
  • Improving false discovery rate estimation.
    Bioinformatics, Vol. 20, No. 11. (22 July 2004), pp. 1737-1745.
    by S Pounds, C Cheng
    posted to splosh by ugengma on 2007-05-18 11:34:51 as *** along with 1 person shigepong
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