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tnys enzyme [109 articles]

Neue Publikationen in tnys Bibliothek eingetragen unter dem Bezeichner: enzyme. You can also see everyone's enzyme.
  • A compromise required by gene sharing enables survival: Implications for evolution of new enzyme activities.
    Proceedings of the National Academy of Sciences of the United States of America (29 August 2008)
    by Sean Yu Y McLoughlin, Shelley D D Copley
    posted to new_function experiment enzyme_function enzyme by tny on 2008-09-16 11:43:28 as ** along with 1 person bpcusack
  • Metal ions in biological catalysis: from enzyme databases to general principles.
    Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry (5 July 2008)
    by Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Gemma L Holliday, Janet M Thornton
    posted to catalysis enzyme metal_binding by tny on 2008-08-08 06:22:51 as ** along with 1 person gemmalholliday
  • Escape from adaptive conflict after duplication in an anthocyanin pathway gene
    Nature (25 June 2008)
    by David, Mark D Rausher
    posted to duplication enzyme evolution by tny on 2008-08-08 05:59:25 as ** along with 3 people and 1 group stajich bpcusack djkt Berkeley Mycology
  • A short history of the thermodynamics of enzyme-catalyzed reactions.
    J Biol Chem, Vol. 279, No. 27. (2 July 2004), pp. 27831-27836.
    by RA Alberty
    posted to enzyme review thermodynamics by tny on 2008-06-25 04:45:37 as ** along with 2 people proportional robert
  • STRUCTURE, DYNAMICS, AND CATALYTIC FUNCTION OF DIHYDROFOLATE REDUCTASE
    Annual Review of Biophysics and Biomolecular Structure, Vol. 33, No. 1. (2004), 119.
    by Jason
    posted to catalysis enzyme by tny on 2008-02-01 10:41:54 as **
  • Rhodobacter capsulatus OlsA Is a Bifunctional Enyzme Active in both Ornithine Lipid and Phosphatidic Acid Biosynthesis
    J. Bacteriol., Vol. 189, No. 23. (1 December 2007), pp. 8564-8574.
    by Semra Aygun-Sunar, Rahmi Bilaloglu, Howard Goldfine, Fevzi Daldal
    posted to enzyme multifunctional_enzyme by tny on 2008-02-01 10:39:16 as **
  • Biochemical and Structural Characterization of a Novel Family of Cystathionine [beta]-Synthase Domain Proteins Fused to a Zn Ribbon-Like Domain
    Journal of Molecular Biology, Vol. 375, No. 1. (4 January 2008), pp. 301-315.
    by Michael Proudfoot, Stephen A Sanders, Alex Singer, Rongguang Zhang, Greg Brown, Andrew Binkowski, Linda Xu, Jonathan A Lukin, Alexey G Murzin, Andrzej Joachimiak, Cheryl H Arrowsmith, Aled M Edwards, Alexei V Savchenko, Alexander F Yakunin
    posted to enzyme metal_binding by tny on 2007-12-04 03:36:40 as **
  • Divergence of Cofactor Recognition across Evolution: Coenzyme A Binding in a Prokaryotic Arylamine N-Acetyltransferase
    Journal of Molecular Biology, Vol. 375, No. 1. (4 January 2008), pp. 178-191.
    by Elizabeth Fullam, Isaac M Westwood, Matthew C Anderton, Edward D Lowe, Edith Sim, Martin E Noble
    posted to enzyme enzyme_superfamily evolution by tny on 2007-12-04 03:25:10 as ** along with 1 person dkanter
  • History of the enzyme nomenclature system
    Bioinformatics, Vol. 16, No. 1. (1 January 2000), pp. 34-40.
    by Keith Tipton, Sinead Boyce
    posted to enzyme review by tny on 2007-10-10 13:32:30 as ** along with 2 people and 1 group jxl robert EC
  • The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case
    BMC Evolutionary Biology, Vol. 7, No. Suppl 2. (2007)
    by Renato Fani, Matteo Brilli, Marco Fondi, Pietro Lio
    posted to enzyme evolution gene_fusion his_metabolism by tny on 2007-09-18 03:52:04 as **
  • Convergent Evolution of Enzyme Active Sites Is not a Rare Phenomenon
    Journal of Molecular Biology, Vol. 372, No. 3. (21 September 2007), pp. 817-845.
    by Pier F Gherardini, Mark N Wass, Manuela Helmer-Citterich, Michael J Sternberg
    posted to convergent enzyme evolution by tny on 2007-09-04 06:45:08 as ** along with 8 people and 2 groups ucbcjbm barry tjimenez jjray chad_davis shung Minty sim82 structural_bioinformatics Bioinformatics
  • Universal Sharing Patterns in Proteomes and Evolution of Protein Fold Architecture and Life
    Journal of Molecular Evolution, Vol. 60, No. 4. (1 April 2005), pp. 484-498.
    by Gustavo Caetano-Anollés, Derek Caetano-Anollés
    posted to enzyme evolution by tny on 2007-07-02 11:27:38 as **
  • MANET: tracing evolution of protein architecture in metabolic networks
    BMC Bioinformatics, Vol. 7 (19 July 2006), 351.
    by Hee S Kim, Jay E Mittenthal, Gustavo Caetano-Anolles
    posted to database_issue enzyme phylogeny by tny on 2007-07-02 11:17:24 as ** along with 2 people kuhn balajis
  • Stability for Function Trade-Offs in the Enolase Superfamily "Catalytic Module"
    by Pc Babbit
    posted to enzyme by tny on 2007-06-28 14:37:50 as **
  • Mass spectrometry and the search for moonlighting proteins.
    Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782.
    by CJ Jeffery
    posted to enzyme moonlighting_enzyme by tny on 2007-04-16 03:34:42 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Molecular mechanisms for multitasking: recent crystal structures of moonlighting proteins.
    Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 663-668.
    by CJ Jeffery
    posted to enzyme moonlighting_enzyme review structure by tny on 2007-04-16 03:30:45 as ** along with 2 people i41m benlin
  • Enzyme promiscuity: mechanism and applications
    Trends in Biotechnology, Vol. In Press, Corrected Proof
    by Karl Hult, Per Berglund
    posted to enzyme promiscuity review by tny on 2007-04-12 10:16:43 as ** along with 2 people msuarezdiez Jporci
  • Moonlighting proteins
    Trends in Biochemical Sciences, Vol. 24, No. 1. (1 January 1999), pp. 8-11.
    by Constance J Jeffery
    posted to enzyme moonlight_enzyme multifunctional_enzyme review by tny on 2007-04-10 13:41:18 as ** along with 3 people and 3 groups stevanspringer marcius benlin FAB-lab BioinfoCIPF SGU-CIPF
  • Structural and functional diversity generated by alternative mRNA splicing
    Trends in Biochemical Sciences, Vol. 30, No. 9. (September 2005), pp. 515-521.
    by Jorg Stetefeld, Markus A Ruegg
    posted to alternative_splicing enzyme by tny on 2007-04-02 14:54:20 as ** along with 1 person Jporci
  • Locating the Active Sites of Enzymes Using Mechanical Properties
    posted to catalytic_site enzyme prediction by tny on 2007-04-02 14:51:39 as **
  • Enzymes with Molecular Tunnels
    Acc. Chem. Res., Vol. 36 (2003), pp. 539-548.
    by Frank
    posted to catalysis enzyme molecular_tunnel by tny on 2007-04-02 14:37:43 as **
  • Novel cofactors via post-translational modifications of enzyme active sites
    Chemistry & Biology, Vol. 7, No. 7. (1 July 2000), pp. R159-R171.
    by Nicole M Okeley, Wilfred A van der Donk
    posted to catalysis enzyme post_translational_modification review by tny on 2007-04-02 14:36:06 as **
  • Hydrogen bonds and proton transfer in general-catalytic transition-state stabilization in enzyme catalysis
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1458, No. 1. (12 May 2000), pp. 43-62.
    by KB Schowen, Limbach, GS Denisov, RL Schowen
    posted to catalysis enzyme hydrogen_bond review by tny on 2007-04-02 14:33:18 as **
  • Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns
    Journal of Molecular Graphics and Modelling, Vol. 24, No. 6. (May 2006), pp. 426-433.
    by Melissa R Landon, Jr Lancia, Karl H Clodfelter, Sandor Vajda
    posted to assignment catalytic_site enzyme by tny on 2007-04-02 14:26:37 as **
  • ORENZA: a web resource for studying ORphan ENZyme Activities
    BMC Bioinformatics, Vol. 7 (06 October 2006), 436.
    by Olivier Lespinet, Bernard Labedan
    posted to ec enzyme orfan by tny on 2007-04-02 14:13:35 as ** along with 2 people dquest JeremyZucker
  • Calculating pKa values in enzyme active sites
    Protein Sci, Vol. 12, No. 9. (1 September 2003), pp. 1894-1901.
    by Jens E Nielsen, Andrew J Mccammon
    posted to catalysis enzyme pka by tny on 2007-04-02 13:56:40 as ** along with 3 people and 1 group boris_aguilar RamuAnandakrishnan qaiser_fatmi group
  • Functional versatility and molecular diversity of the metabolic map of Escherichia coli.
    Genome Res, Vol. 11, No. 9. (September 2001), pp. 1503-1510.
    by S Tsoka, CA Ouzounis
    posted to enzyme metabolism by tny on 2007-04-02 13:40:38 as ** along with 1 person kuhn
  • Substrate-assisted catalysis: molecular basis and biological significance
    Protein Sci, Vol. 9, No. 1. (1 January 2000), pp. 1-9.
    by W Dall'acqua, P Carter
    posted to catalysis enzyme substrate-assisted by tny on 2007-04-02 13:36:44 as **
  • Conservation of Electrostatic Properties within Enzyme Families and Superfamilies
    Biochemistry
    by Livesay Dr, P Jambeck, A Rojnuckarin, S Subramaniam
    posted to electrostatic enzyme by tny on 2007-04-02 12:59:06 as **
  • Enzyme promiscuity: evolutionary and mechanistic aspects
    Current Opinion in Chemical Biology, Vol. 10, No. 5. (October 2006), pp. 498-508.
    by Olga Khersonsky, Cintia Roodveldt, Dan S Tawfik
    posted to catalysis enzyme evolution by tny on 2007-04-02 12:26:25 as ** along with 4 people BragilMassoud kuhn ucbcjbm renatomilani
  • Evolution of protein function, from a structural perspective
    Current Opinion in Chemical Biology, Vol. 3, No. 5. (1 October 1999), pp. 548-556.
    by Annabelle E Todd, Christine A Orengo, Janet M Thornton
    posted to enzyme evolution review by tny on 2007-04-02 12:13:27 as **
  • Evolution of bioinorganic motifs in P450-containing systems
    Biochem. Soc. Trans, Vol. 29 (2001), pp. 139-147.
    by KN Degtyarenko, TA Kulikova
    posted to enzyme evolution p450 by tny on 2007-02-23 11:53:21 as **
  • The Conformational Plasticity of Protein Kinases
    Cell, Vol. 109, No. 3. (3 May 2002), pp. 275-282.
    by Morgan Huse, John Kuriyan
    posted to enzyme kinase plasticity review by tny on 2007-02-14 12:53:45 as **
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    posted to database enzyme by tny on 2007-02-14 06:12:42 as ** along with 14 people namunet jyuh aalibes kuhn balajis alexg eweaver dullhunk michC frohike incovoma sgoetz yggdrasil natstreet
  • EzCatDB: the Enzyme Catalytic-mechanism Database.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by N Nagano
    posted to catalytic_site database enzyme by tny on 2007-02-14 06:08:40 as ** along with 4 people ziquje eweaver Jporci sim82
  • On the Evolution of Biochemical Syntheses
    Proceedings of the National Academy of Sciences, Vol. 31 (15 June 1945), pp. 152-157.
    by NH Horowitz
    posted to enzyme evolution by tny on 2007-02-14 05:57:18 as **
  • The 'evolvability' of promiscuous protein functions
    Nature Genetics, Vol. 37, No. 1. (28 November 2004), 73.
    by Amir Aharoni, Leonid Gaidukov, Olga Khersonsky, Stephen M Gould, Cintia Roodveldt, Dan S Tawfik
    posted to enzyme engeneering by tny on 2007-01-25 03:18:22 as ** along with 3 people bpcusack jshapiro kuhn
  • Enzyme Recruitment in Evolution of New Function
    Annual Review of Microbiology, Vol. 30 (1976), pp. 409-425.
    by RA Jensen
    posted to enzyme evolution by tny on 2007-01-25 03:16:05 as **
  • New Superfamily Members Identified for Schiff-Base Enzymes Based on Verification of Catalytically Essential Residues
    by Kyung
    posted to schiff-base enzyme catalytic by tny on 2007-01-25 03:10:09 as **
  • Evolution of enzyme superfamilies
    Current Opinion in Chemical Biology, Vol. 10, No. 5. (October 2006), pp. 492-497.
    by Margaret E Glasner, John A Gerlt, Patricia C Babbitt
    posted to evolution enzyme catalysis by tny on 2007-01-25 03:03:50 as ** along with 4 people and 1 group kuhn robert caporaso ucbcjbm biomedical-nlp
  • Relation between domain evolution, specificity, and taxonomy of the alpha-amylase family members containing a C-terminal starch-binding domain
    Eur J Biochem, Vol. 270, No. 4. (15 February 2003), pp. 635-645.
    by Stefan Janecek, Birte Svensson, Ann E Macgregor
    posted to taxonomy phylogeny enzyme amylase by tny on 2007-01-23 01:08:12 as **
  • Divergence of Function in Sequence-Related Groups of Escherichia coli Proteins
    Genome Res., Vol. 11, No. 8. (1 August 2001), pp. 1375-1381.
    by Laila A Nahum, Monica Riley
    posted to enzyme diversity by tny on 2007-01-22 09:21:53 as **
  • Zinc through the three domains of life.
    J Proteome Res, Vol. 5, No. 11. (November 2006), pp. 3173-3178.
    by C Andreini, L Banci, I Bertini, A Rosato
    posted to metal_binding enzyme by tny on 2007-01-22 02:58:53 as ** along with 1 person and 1 group Sarat MAGGIE
  • The Generation of New Protein Functions by the Combination of Domains
    Structure, Vol. 15, No. 1. (January 2007), pp. 85-99.
    by Matthew Bashton, Cyrus Chothia
    posted to enzyme domain_combination by tny on 2007-01-19 10:11:30 as ** along with 6 people and 1 group ucbcjbm Einat madhadron choonpeng cjeans bioinfolib structural_bioinformatics
  • A gene fusion event in the evolution of aminoacyl-tRNA synthetases
    FEBS Letters, Vol. 470, No. 3. (31 March 2000), pp. 300-304.
    by Eric Berthonneau, Marc Mirande
    posted to gene_fusion evolution enzyme aars by tny on 2007-01-12 09:26:22 as **
  • The origin and evolution of eucaryal HIS7 genes: from metabolon to bifunctional proteins?
    Gene, Vol. 339 (15 September 2004), pp. 149-160.
    by Matteo Brilli, Renato Fani
    posted to gene_fusion evolution enzyme by tny on 2007-01-12 08:57:19 as ** along with 1 person klo
  • The Monomer/Dimer Transition of Enzyme I of the Escherichia coli Phosphotransferase System
    J. Biol. Chem., Vol. 281, No. 26. (30 June 2006), pp. 17570-17578.
    by Himatkumar V Patel, Kavita A Vyas, Regina Savtchenko, Saul Roseman
    posted to enzyme experiment oligomer pep by tny on 2006-12-27 09:11:35 as **
  • Regulatory links between carbon and nitrogen metabolism
    Current Opinion in Microbiology, Vol. 9, No. 2. (April 2006), pp. 167-172.
    by Fabian M Commichau, Karl Forchhammer, Jorg Stulke
    posted to enzyme pep review by tny on 2006-12-27 09:11:13 as ** along with 1 person comb
  • Substrate regulation of serotonin and dopamine synthesis in Drosophila
    Invertebrate Neuroscience, Vol. 5, No. 2. (October 2004), pp. 85-96.
    by Coleman, Chandra, Neckameyer, Wendi
    posted to enzyme experiment by tny on 2006-12-14 08:02:12 as **
  • A single locus encodes both phenylalanine hydroxylase and tryptophan hydroxylase activities in Drosophila
    The Journal Of Biological Chemistry, Vol. 267, No. 6. (25 February 1992), pp. 4199-4206.
    by WS Neckameyer, K White
    posted to enzyme experiment multifunctional_enzyme by tny on 2006-12-14 07:36:23 as **
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