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tjis library [50 articles]

Neue Artikel in tjis Bibliothek.
  • The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase.
    J Biol Chem, Vol. 276, No. 50. (14 December 2001), pp. 47227-47232.
    by AC Hausrath, RA Capaldi, BW Matthews
    posted to ecoli epsilon gamma structure by tji on 2008-02-08 02:49:28 as **
  • Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.
    Nature, Vol. 410, No. 6831. (19 April 2001), pp. 898-904.
    by R Yasuda, H Noji, M Yoshida, K Kinosita, H Itoh
    posted to fof1 rotation by tji on 2008-01-16 06:40:20 as ** along with 1 person melting
  • F1-ATPase is a highly efficient molecular motor that rotates with discrete 120 degree steps.
    Cell, Vol. 93, No. 7. (26 June 1998), pp. 1117-1124.
    by R Yasuda, H Noji, K Kinosita, M Yoshida
    posted to fof1 rotation by tji on 2008-01-16 06:37:54 as **
  • Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria.
    Nature, Vol. 370, No. 6491. (25 August 1994), pp. 621-628.
    by JP Abrahams, AG Leslie, R Lutter, JE Walker
    posted to fof1 structure by tji on 2008-01-16 06:36:16 as **
  • A perspective of the binding change mechanism for ATP synthesis.
    FASEB J, Vol. 3, No. 10. (August 1989), pp. 2164-2178.
    by PD Boyer
    posted to fof1 rotation by tji on 2008-01-16 06:31:36 as **
  • Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models
    Journal of Computational Chemistry, Vol. 13, No. 8. (1992), pp. 952-962.
    by Shuichi Miyamoto, Peter A Kollman
    posted to settle by tji on 2007-12-20 07:58:38 as ** along with 5 people A_Coletta_Thesis jwagoner softsimu ashaytan robertvacha
  • LINCS: A linear constraint solver for molecular simulations
    Journal of Computational Chemistry, Vol. 18, No. 12. (1997), pp. 1463-1472.
    by Berk Hess, Henk Bekker, Herman JC Berendsen, Johannes GEM Fraaije
    posted to lincs by tji on 2007-12-18 05:42:17 as ** along with 3 people A_Coletta_Thesis ashaytan jteyra
  • Particle mesh Ewald: An N [center-dot] log(N) method for Ewald sums in large systems
    The Journal of Chemical Physics, Vol. 98, No. 12. (1993), pp. 10089-10092.
    by Tom Darden, Darrin York, Lee Pedersen
    posted to pme by tji on 2007-12-18 05:38:44 as ** along with 8 people robertvacha A_Coletta_Thesis mleis and_ped10 allmensch easybakemuffin RamuAnandakrishnan ashaytan
  • The Protein Data Bank.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 235-242.
    by HM Berman, J Westbrook, Z Feng, G Gilliland, TN Bhat, H Weissig, IN Shindyalov, PE Bourne
    posted to pdb by tji on 2007-12-18 05:37:36 as ** along with 23 people and 4 groups nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon leelarcombe aengisch debatebob massivemayhem gisle girschick selrac higueruelo boris_aguilar sebk timg Radiation_Damage Stressosome biomedical-nlp beta
  • Molecular dynamics simulations of palmitate entry into the hydrophobic pocket of the fatty acid binding protein
    FEBS Letters, Vol. 581, No. 6. (20 March 2007), pp. 1243-1247.
    by Yossi Tsfadia, Ran Friedman, Jonathan Kadmon, Anna Selzer, Esther Nachliel, Menachem Gutman
    posted to method by tji on 2007-12-18 04:52:07 as **
  • Interaction models for water in relation to protein hydration
    Intermolecular Forces (1981), pp. 331-342.
    by HJC Berendsen, JPM Postma, WF van Gunsteren, J Hermans
    posted to spc by tji on 2007-12-18 04:40:39 as **
  • A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
    Journal of Computational Chemistry, Vol. 25, No. 13. (2004), pp. 1656-1676.
    by Chris Oostenbrink, Alessandra Villa, Alan E Mark, Wilfred F Van Gunsteren
    posted to 53a6 gromos by tji on 2007-12-18 04:19:59 as ** along with 1 person ashaytan
  • Coupling of Phosphorylation to Electron and Hydrogen Transfer by a Chemi-Osmotic type of Mechanism
    Nature, Vol. 191, No. 4784. (July 1961), pp. 144-148.
    by Peter Mitchell
    posted to fof1 by tji on 2007-12-14 07:53:56 as **
  • MDシミュレーションによるPhotoactive Yellow Proteinの光異性化反応
    (2000)
    by 山田
    posted to md by tji on 2007-12-13 07:27:36 as **
  • シリコン結晶化過程の分子動力学
    (2001)
    by 井上, 丸山
    posted to md by tji on 2007-12-13 07:24:55 as **
  • 分子動力学／自由エネルギー摂動法を用いたタンパク質熱構造安定性の研究
    (2002)
    by 沖田, 小長谷
    posted to md by tji on 2007-12-13 07:23:25 as **
  • 熱流体工学における分子動力学法
    (2001)
    by 徳増, 小原
    posted to md by tji on 2007-12-13 07:18:30 as **
  • 多層カーボンナノチューブの層間熱伝導の分子動力学
    (2006)
    by 和也 北村, 茂夫 丸山
    posted to md by tji on 2007-12-13 02:06:03 as **
  • VMD: Visual molecular dynamics
    Journal of Molecular Graphics, Vol. 14, No. 1. (February 1996), pp. 33-38.
    by William Humphrey, Andrew Dalke, Klaus Schulten
    posted to vmd by tji on 2007-12-11 08:07:07 as ** along with 1 person RamuAnandakrishnan
  • GROMACS 3.0: a package for molecular simulation and trajectory analysis
    Journal of Molecular Modeling, Vol. 7, No. 8. (2001), pp. 306-317.
    by Erik Lindahl, Berk Hess, David van der Spoel
    posted to gromacs by tji on 2007-12-11 08:05:05 as ** along with 2 people and 2 groups rabio roland_ewald dIEMoSIRIS MoSi-Rostock
  • GROMACS: A message-passing parallel molecular dynamics implementation
    Computer Physics Communications, Vol. 91, No. 1-3. (2 September 1995), pp. 43-56.
    by HJC Berendsen, D van der Spoel, R van Drunen
    posted to gromacs by tji on 2007-12-11 08:04:28 as ** along with 3 people ffranca robertvacha gisle
  • GROMACS: fast, flexible, and free.
    J Comput Chem, Vol. 26, No. 16. (December 2005), pp. 1701-1718.
    by D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, HJ Berendsen
    posted to gromacs by tji on 2007-12-11 08:03:26 as ** along with 12 people and 2 groups dimka jwm ttjoseph bilab rabio Dinler softsimu ashaytan robertvacha sunnytov Diego_Prada A_Coletta_Thesis Radiation_Damage Stressosome
  • ModLoop: automated modeling of loops in protein structures.
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2500-2501.
    by A Fiser, A Sali
    posted to modloop by tji on 2007-12-11 08:01:22 as ** along with 1 person vavi
  • Modeling of loops in protein structures.
    Protein Sci, Vol. 9, No. 9. (September 2000), pp. 1753-1773.
    by A Fiser, RK Do, A Sali
    posted to modloop by tji on 2007-12-11 08:00:42 as ** along with 4 people warlock6x3 vavi ttjoseph mirzazadeh
  • Inhibitory properties of endogenous subunit [epsilon] in the Escherichia coli F1 ATPase
    Archives of Biochemistry and Biophysics, Vol. 197, No. 1. (1 October 1979), pp. 83-89.
    by Patrice P Laget, Jeffrey B Smith
    posted to atp epsilon inhibitor by tji on 2007-12-11 07:19:58 as **
  • F0F1-ATPase/Synthase Is Geared to the Synthesis Mode by Conformational Rearrangement of epsilon Subunit in Response to Proton Motive Force and ADP/ATP Balance
    J. Biol. Chem., Vol. 278, No. 47. (21 November 2003), pp. 46840-46846.
    by Toshiharu Suzuki, Tomoe Murakami, Ryota Iino, Junko Suzuki, Sakurako Ono, Yasuo Shirakihara, Masasuke Yoshida
    posted to epsilon fof1 inhibitor by tji on 2007-12-10 06:21:34 as **
  • Large conformational changes of the epsilon subunit in the bacterial F1F0 ATP synthase provide a ratchet action to regulate this rotary motor enzyme.
    Proc Natl Acad Sci U S A, Vol. 98, No. 12. (5 June 2001), pp. 6560-6564.
    by SP Tsunoda, AJ Rodgers, R Aggeler, MC Wilce, M Yoshida, RA Capaldi
    posted to bf1 epsilon fof1 by tji on 2007-12-10 06:18:34 as **
  • Epsilon subunit, an endogenous inhibitor of bacterial F(1)-ATPase, also inhibits F(0)F(1)-ATPase.
    J Biol Chem, Vol. 274, No. 48. (26 November 1999), pp. 33991-33994.
    by Y Kato-Yamada, D Bald, M Koike, K Motohashi, T Hisabori, M Yoshida
    posted to bf1 epsilon inhibitor by tji on 2007-12-10 06:14:55 as **
  • Energy-dependent changes in the conformation of the epsilon subunit of the chloroplast ATP synthase.
    J Biol Chem, Vol. 262, No. 31. (5 November 1987), pp. 15037-15040.
    by ML Richter, RE McCarty
    posted to atp cf1 epsilon by tji on 2007-12-10 06:12:14 as **
  • Structure of the gamma-epsilon complex of ATP synthase.
    Nat Struct Biol, Vol. 7, No. 11. (November 2000), pp. 1051-1054.
    by AJ Rodgers, MC Wilce
    posted to epsilon gamma structure by tji on 2007-12-10 06:11:03 as **
  • Highly coupled ATP synthesis by F1-ATPase single molecules
    Nature, Vol. 433, No. 7027. (17 February 2005), pp. 773-777.
    by Yannick Rondelez, Guillaume Tresset, Takako Nakashima, Yasuyuki Kato-Yamada, Hiroyuki Fujita, Shoji Takeuchi, Hiroyuki Noji
    posted to atp epsilon by tji on 2007-12-10 06:03:38 as **
  • Thermophilic F1-ATPase is activated without dissociation of an endogenous inhibitor, epsilon subunit.
    J Biol Chem, Vol. 272, No. 40. (3 October 1997), pp. 24906-24912.
    by Y Kato, T Matsui, N Tanaka, E Muneyuki, T Hisabori, M Yoshida
    posted to epsilon tf1 by tji on 2007-12-10 05:58:52 as **
  • Inhibitory properties of endogenous subunit epsilon in the Escherichia coli F1 ATPase.
    Arch Biochem Biophys, Vol. 197, No. 1. (1 October 1979), pp. 83-89.
    by PP Laget, JB Smith
    posted to ecoli epsilon inhibitor by tji on 2007-12-10 05:53:40 as **
  • Partial purification of active delta and epsilon subunits of the membrane ATPase from escherichia coli.
    J Supramol Struct, Vol. 3, No. 3. (1975), pp. 248-255.
    by JB Smith, PC Sternweis, LA Heppel
    posted to epsilon by tji on 2007-12-10 05:52:29 as **
  • Molecular dynamics with coupling to an external bath
    The Journal of Chemical Physics, Vol. 81, No. 8. (1984), pp. 3684-3690.
    by HJC Berendsen, JPM Postma, WF van Gunsteren, A Dinola, JR Haak
    posted to berendsen pressure temperature by tji on 2007-12-10 05:46:40 as ** along with 6 people lillekatt allmensch jwagoner luisand choonpeng jteyra
  • The molecular mechanism of ATP synthesis by F1F0-ATP synthase.
    Biochim Biophys Acta, Vol. 1553, No. 3. (15 February 2002), pp. 188-211.
    by AE Senior, S Nadanaciva, J Weber
    posted to fof1 by tji on 2007-12-07 02:11:17 as ** along with 1 person balajis
  • ATP synthase--a marvellous rotary engine of the cell.
    Nat Rev Mol Cell Biol, Vol. 2, No. 9. (September 2001), pp. 669-677.
    by M Yoshida, E Muneyuki, T Hisabori
    posted to fof1 by tji on 2007-12-06 09:11:05 as **
  • F1-ATPase: a highly efficient rotary ATP machine.
    Essays Biochem, Vol. 35 (2000), pp. 3-18.
    by K Kinosita, R Yasuda, H Noji
    posted to fof1 by tji on 2007-12-06 09:10:24 as **
  • The ATP synthase--a splendid molecular machine.
    Annu Rev Biochem, Vol. 66 (1997), pp. 717-749.
    by PD Boyer
    posted to fof1 by tji on 2007-12-06 08:26:57 as **
  • Linear and rotary molecular motors.
    Adv Exp Med Biol, Vol. 453 (1998)
    by K Kinosita
    posted to rotation by tji on 2007-12-06 06:16:36 as **
  • Direct observation of the rotation of F1-ATPase.
    Nature, Vol. 386, No. 6622. (20 March 1997), pp. 299-302.
    by H Noji, R Yasuda, M Yoshida, K Kinosita
    posted to rotation by tji on 2007-12-06 06:16:11 as **
  • Direct observation of the rotation of epsilon subunit in F1-ATPase.
    J Biol Chem, Vol. 273, No. 31. (31 July 1998), pp. 19375-19377.
    by Y Kato-Yamada, H Noji, R Yasuda, K Kinosita, M Yoshida
    posted to epsilon rotation by tji on 2007-12-06 06:15:34 as **
  • Isolated epsilon subunit of Bacillus subtilis F1-ATPase binds ATP.
    FEBS Lett, Vol. 579, No. 30. (19 December 2005), pp. 6875-6878.
    by Y Kato-Yamada
    posted to atp bf1 epsilon by tji on 2007-12-06 06:12:42 as **
  • Crystal structure of the epsilon subunit of the proton-translocating ATP synthase from Escherichia coli.
    Structure, Vol. 5, No. 9. (15 September 1997), pp. 1219-1230.
    by U Uhlin, GB Cox, JM Guss
    posted to ecoli epsilon structure by tji on 2007-12-06 06:11:58 as **
  • Structures of the thermophilic F1-ATPase epsilon subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1.
    Proc Natl Acad Sci U S A, Vol. 104, No. 27. (3 July 2007), pp. 11233-11238.
    by H Yagi, N Kajiwara, H Tanaka, T Tsukihara, Y Kato-Yamada, M Yoshida, H Akutsu
    posted to epsilon structure tf1 by tji on 2007-12-06 06:11:01 as **
  • Real-time monitoring of conformational dynamics of the epsilon subunit in F1-ATPase.
    J Biol Chem, Vol. 280, No. 48. (2 December 2005), pp. 40130-40134.
    by R Iino, T Murakami, S Iizuka, Y Kato-Yamada, T Suzuki, M Yoshida
    posted to epsilon iino by tji on 2007-12-06 06:10:19 as **
  • Isolated epsilon subunit of thermophilic F1-ATPase binds ATP.
    J Biol Chem, Vol. 278, No. 38. (19 September 2003), pp. 36013-36016.
    by Y Kato-Yamada, M Yoshida
    posted to epsilon tf1 by tji on 2007-12-06 06:09:43 as **
  • gammaepsilon Sub-complex of thermophilic ATP synthase has the ability to bind ATP.
    Biochem Biophys Res Commun, Vol. 349, No. 4. (3 November 2006), pp. 1368-1371.
    by S Iizuka, S Kato, M Yoshida, Y Kato-Yamada
    posted to epsilon gamma tf1 by tji on 2007-12-06 02:03:30 as **
  • Movement of the helical domain of the epsilon subunit is required for the activation of thermophilic F1-ATPase.
    J Biol Chem, Vol. 275, No. 46. (17 November 2000), pp. 35746-35750.
    by Y Kato-Yamada, M Yoshida, T Hisabori
    posted to epsilon tf1 by tji on 2007-12-06 02:02:40 as **
  • Role of the epsilon subunit of thermophilic F1-ATPase as a sensor for ATP
    J. Biol. Chem. (12 October 2007), M707509200.
    by Shigeyuki Kato, Masasuke Yoshida, Yasuyuki Kato-Yamada
    posted to epsilon tf1 by tji on 2007-12-06 02:01:17 as **
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