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talponers library [162 articles]

Neue Artikel in talponers Bibliothek.
  • Limma: linear models for microarray data
    (2005), pp. 397-420.
    by GK Smyth
    edited by R Gentleman, V Carey, S Dudoit, R Irizarry, W Huber
    posted to no-tag by talponer on 2008-07-04 11:15:40 as **
  • Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets.
    Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8633-8638.
    by S Persson, H Wei, J Milne, GP Page, CR Somerville
    posted to tiling statistics microarray by talponer on 2008-05-12 15:44:27 as ** along with 1 person kengg
  • CressExpress: A tool for large-scale mining of expression data from Arabidopsis thaliana.
    Plant physiology (8 May 2008)
    by Vinodh Srinivasasainagendra, Grier Page, Tapan Mehta, Issa Coulibaly, Ann E E Loraine
    posted to statistics microarray by talponer on 2008-05-12 11:22:32 as ** along with 2 people kengg imtechnology
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to tiling sequences by talponer on 2008-05-01 11:35:37 as ** along with 18 people and 1 group bozdagd gpappas operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin EisenLab
  • A model of molecular interactions on short oligonucleotide microarrays.
    Nat Biotechnol, Vol. 21, No. 7. (July 2003), pp. 818-821.
    by L Zhang, MF Miles, KD Aldape
    posted to tiling by talponer on 2008-04-30 10:03:06 as ** along with 2 people bertelsen nicholso
  • Assessing the need for sequence-based normalization in tiling microarray experiments
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 988-997.
    by Royce, E Thomas, Rozowsky, S Joel, Gerstein, B Mark
    posted to tiling microarray by talponer on 2008-04-25 16:19:08 as ** along with 1 person magusina
  • Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray
    Nucl. Acids Res., Vol. 32, No. 2. (2 February 2004), pp. 681-690.
    by Inhan Lee, Alan A Dombkowski, Brian D Athey
    posted to statistics tiling by talponer on 2008-04-21 18:43:02 as **
  • Modeling of DNA microarray data by using physical properties of hybridization
    Proceedings of the National Academy of Sciences, Vol. 100, No. 13. (24 June 2003), pp. 7575-7580.
    by GA Held, G Grinstein, Y Tu
    posted to statistics tiling by talponer on 2008-04-17 16:30:34 as **
  • Relationship between gene expression and observed intensities in DNA microarraysa modeling study
    Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. e70-e70.
    by Held, , Grinstein, , Tu,
    posted to statistics tiling by talponer on 2008-04-17 16:09:18 as ** along with 1 person bertelsen
  • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics.
    Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1460-1465.
    by J SantaLucia
    posted to statistics tiling by talponer on 2008-04-17 14:28:24 as ** along with 2 people davidng stsaft
  • Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2928-2933.
    by Sven Rahmann, Christine Grafe
    posted to statistics tiling by talponer on 2008-04-17 14:17:15 as **
  • Improving comparability between microarray probe signals by thermodynamic intensity correction.
    Nucleic Acids Res (2 March 2007)
    by Georg M M Bruun, Rasmus Wernersson, Agnieszka S S Juncker, Hanni Willenbrock, Henrik Bjørn B Nielsen
    posted to microarray statistics tiling by talponer on 2008-04-17 10:29:53 as ** along with 5 people jyuh ghattem GeeSharpMinor niallhaslam waszak
  • Sterol biosynthesis via cycloartenol and other biochemical features related to photosynthetic phyla in the amoeba Naegleria lovaniensis and Naegleria gruberi.
    European journal of biochemistry / FEBS, Vol. 164, No. 2. (15 April 1987), pp. 427-434.
    by D Raederstorff, M Rohmer
    posted to no-tag by talponer on 2008-04-16 11:56:36 as **
  • The role of elastic stresses on leaf venation morphogenesis.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MF Laguna, S Bohn, EA Jagla
    posted to no-tag by talponer on 2008-04-15 16:44:39 as ** along with 1 person cwr
  • Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 12. (22 March 2005), pp. 4453-4458.
    by V Stolc, MP Samanta, W Tongprasit, H Sethi, S Liang, DC Nelson, A Hegeman, C Nelson, D Rancour, S Bednarek, EL Ulrich, Q Zhao, RL Wrobel, CS Newman, BG Fox, GN Phillips, JL Markley, MR Sussman
    posted to microarray tiling by talponer on 2008-04-03 09:54:33 as **
  • Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays.
    PLoS Genet, Vol. 4, No. 3. (March 2008)
    by X Zhang, S Shiu, A Cal, JO Borevitz
    posted to microarray tiling by talponer on 2008-04-03 09:51:24 as ** along with 1 person rschulz
  • Regulators and Regulation of Legume Root Nodule Development
    Plant Physiol., Vol. 124, No. 2. (1 October 2000), pp. 531-540.
    by Jens Stougaard
    posted to nodulin by talponer on 2008-03-28 11:00:51 as **
  • Nod factor structures, responses, and perception during initiation of nodule development
    Glycobiology, Vol. 12, No. 6. (1 June 2002), pp. 79R-105.
    by Wim D'Haeze, Marcelle Holsters
    posted to nodulin by talponer on 2008-03-28 11:00:08 as **
  • Quantile smoothing of array CGH data
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1146-1153.
    by HC Eilers, X de Menezes
    posted to microarray tiling by talponer on 2008-03-25 09:50:03 as **
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
    posted to microarray by talponer on 2008-03-11 12:07:36 as ** along with 11 people srp33 bertelsen pcahan1 RMGraze aviad_work vplagnol ghattem heliopais wirawan waszak rschulz
  • A physical model for tiling array analysis.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by HR Chung, D Kostka, M Vingron
    posted to microarray by talponer on 2008-03-06 12:35:48 as ** along with 2 people jyuh sebastien_vigneau
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to microarray by talponer on 2008-03-06 12:35:03 as ** along with 4 people and 1 group bertelsen kengg nicholso caseybrown Plantandetc
  • Virus-Induced Host Gene Shutoff in Animals and Plants
    Virology, Vol. 243, No. 2. (10 April 1998), pp. 261-267.
    by Miguel Aranda, Andrew Maule
    posted to tesi by talponer on 2008-03-05 11:51:23 as **
  • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    Neuroscience Letters, Vol. 339, No. 1. (13 March 2003), pp. 62-66.
    by Christian Ramakers, Jan M Ruijter, Ronald H Deprez, Antoon F Moorman
    posted to no-tag by talponer on 2008-03-05 10:50:29 as **
  • Genevestigator. Facilitating Web-Based Gene-Expression Analysis
    Plant Physiol., Vol. 141, No. 4. (1 August 2006), pp. 1164-1166.
    by Aleel K Grennan
    posted to tesi by talponer on 2008-03-04 17:24:11 as **
  • The Gene Ontology (GO) database and informatics resource.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by MA Harris, J Clark, A Ireland, J Lomax, M Ashburner, R Foulger, K Eilbeck, S Lewis, B Marshall, C Mungall, J Richter, GM Rubin, JA Blake, C Bult, M Dolan, H Drabkin, JT Eppig, DP Hill, L Ni, M Ringwald, R Balakrishnan, JM Cherry, KR Christie, MC Costanzo, SS Dwight, S Engel, DG Fisk, JE Hirschman, EL Hong, RS Nash, A Sethuraman, CL Theesfeld, D Botstein, K Dolinski, B Feierbach, T Berardini, S Mundodi, SY Rhee, R Apweiler, D Barrell, E Camon, E Dimmer, V Lee, R Chisholm, P Gaudet, W Kibbe, R Kishore, EM Schwarz, P Sternberg, M Gwinn, L Hannick, J Wortman, M Berriman, V Wood, N de la Cruz, P Tonellato, P Jaiswal, T Seigfried, R White,
    posted to tesi by talponer on 2008-03-04 17:21:30 as ** along with 8 people and 1 group setar balajis nuke2005 benny dullhunk bundschu sgoetz waghsk generif_paper
  • Expression of stress-response proteins upon whitefly-mediated inoculation of Tomato yellow leaf curl virus in susceptible and resistant tomato plants
    Molecular Plant-Microbe Interactions, Vol. 20, No. 11. (November 2007), pp. 1376-1383.
    by R Gorovits, F Akad, H Beery, F Vidavsky, A Mahadav, H Czosnek
    posted to no-tag by talponer on 2008-03-03 16:03:34 as **
  • A heat shock transcription factor in pea is differentially controlled by heat and virus replication
    The Plant Journal, Vol. 20, No. 2. (1999), pp. 153-161.
    by Miguel A Aranda, Margarita Escaler, Carole L Thomas, Andrew J Maule
    posted to tesi by talponer on 2008-03-03 15:55:02 as **
  • Specific and common changes in Nicotiana benthamiana gene expression in response to infection by enveloped viruses
    J Gen Virol, Vol. 86, No. 9. (1 September 2005), pp. 2615-2625.
    by G Senthil, H Liu, VG Puram, A Clark, A Stromberg, MM Goodin
    posted to tesi by talponer on 2008-03-03 15:53:24 as **
  • Increased Disease Susceptibility of Transgenic Tobbacco Plants with Suppressed Levels of Preformed Phenylpropanoid Products
    Proceedings of the National Academy of Sciences, Vol. 91, No. 16. (2 August 1994), pp. 7802-7806.
    by EA Maher, NJ Bate, W Ni, Y Elkind, RA Dixon, CJ Lamb
    posted to tesi by talponer on 2008-03-03 15:15:51 as **
  • Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection
    BMC Plant Biology, Vol. 6 (03 November 2006), 26.
    by Gracia Zabala, Jijun Zou, Jigyasa Tuteja, Delkin O Gonzalez, Steven J Clough, Lila O Vodkin
    posted to tesi by talponer on 2008-03-03 15:10:24 as **
  • mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    The Plant Journal, Vol. 37, No. 6. (2004), pp. 914-939.
    by Oliver Thimm, Oliver Blasing, Yves Gibon, Axel Nagel, Svenja Meyer, Peter Kruger, Joachim Selbig, Lukas A Muller, Seung Y Rhee, Mark Stitt
    posted to tesi by talponer on 2008-02-29 14:50:21 as **
  • Metabolic reprogramming in plant innate immunity: the contributions of phenylpropanoid and oxylipin pathways
    Immunological Reviews, Vol. 198, No. 1. (2004), pp. 267-284.
    by Sylvain La Camera, Guillaume Gouzerh, Sandrine Dhondt, Laurent Hoffmann, Bernard Fritig, Michel Legrand, Thierry Heitz
    posted to tesi by talponer on 2008-02-28 14:52:59 as **
  • Viral Modulators of Cullin RING Ubiquitin Ligases: Culling the Host Defense
    Sci. STKE, Vol. 2006, No. 335. (16 May 2006), pe21.
    by Michele Barry, Klaus Fruh
    posted to no-tag by talponer on 2008-02-28 14:23:05 as **
  • Misfolded plant virus proteins: elicitors and targets of ubiquitylation
    FEBS Letters, Vol. 545, No. 2-3. (19 June 2003), pp. 229-232.
    by Harald Jockusch, Christiane Wiegand
    posted to tesi by talponer on 2008-02-28 14:18:52 as **
  • Transformation of peanut using a modified bacterial mercuric ion reductase gene driven by an actin promoter from Arabidopsis thaliana
    Journal of Plant Physiology, Vol. 160, No. 8. (2003), pp. 945-952.
    by Hongyu Yang, Nairn, Peggy Ozias-Akins
    posted to no-tag by talponer on 2008-02-25 10:48:42 as **
  • Tutorial on modeling ordered categorical response data.
    Psychological Bulletin, Vol. 105, No. 2. (March 1989), pp. 290-301.
    by Alan Agresti
    posted to tesi by talponer on 2008-02-04 13:41:07 as **
  • Microarray data normalization and transformation
    Nature Genetics, Vol. 32 (2002), pp. 496-501.
    by John Quackenbush
    edited by Nature
    posted to microarray tesi by talponer on 2008-02-01 15:37:59 as **
  • A Novel Method to Compensate for Different Amplification Efficiencies between Patient DNA Samples in Quantitative Real-Time PCR
    J Mol Diagn, Vol. 3, No. 2. (1 May 2001), pp. 55-61.
    by Jules Meijerink, Caroline Mandigers, Louis van de Locht, Evelyn Tonnissen, Federico Goodsaid, John Raemaekers
    posted to tesi by talponer on 2008-02-01 15:25:35 as **
  • Validation of a quantitative method for real time PCR kinetics.
    Biochem Biophys Res Commun, Vol. 294, No. 2. (7 June 2002), pp. 347-353.
    by W Liu, DA Saint
    posted to tesi by talponer on 2008-02-01 15:23:08 as ** along with 1 person imouthesmp
  • A new mathematical model for relative quantification in real-time RT-PCR
    Nucl. Acids Res., Vol. 29, No. 9. (1 May 2001), e45.
    by Michael W Pfaffl
    posted to tesi by talponer on 2008-02-01 15:19:40 as ** along with 2 people madhadron cchand
  • Mathematical formulae for the prediction of the residual beta cell function during the first two years of disease in children and adolescents with insulin-dependent diabetes mellitus
    Medical Hypotheses, Vol. 45, No. 5. (November 1995), pp. 486-490.
    by Y Klipper-Aurbach, M Wasserman, N Braunspiegel-Weintrob, D Borstein, S Peleg, S Assa, M Karp, Y Benjamini, Y Hochberg, Z Laron
    posted to microarray tesi by talponer on 2008-02-01 15:14:45 as **
  • Normalization of cDNA microarray data
    Methods, Vol. 31 (2003), pp. 265-273.
    by GK Smyth, TP Speed
    posted to microarray tesi by talponer on 2008-02-01 14:57:28 as **
  • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3674-3676.
    by A Conesa, S Götz, JM García-Gómez, J Terol, M Talón, M Robles
    posted to microarray tesi by talponer on 2008-02-01 14:51:58 as ** along with 4 people aconesa Garamonfok sgoetz imelda
  • The functions and consensus motifs of nine types of peptide segments that form different types of nucleotide-binding sites
    European Journal of Biochemistry, Vol. 222, No. 1. (1994), pp. 9-19.
    by Thomas W Traut
    posted to plant resistence by talponer on 2008-01-30 11:01:46 as **
  • Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses.
    Plant Cell, Vol. 14, No. 3. (March 2002), pp. 559-574.
    by W Chen, NJ Provart, J Glazebrook, F Katagiri, HS Chang, T Eulgem, F Mauch, S Luan, G Zou, SA Whitham, PR Budworth, Y Tao, Z Xie, X Chen, S Lam, JA Kreps, JF Harper, A Si-Ammour, B Mauch-Mani, M Heinlein, K Kobayashi, T Hohn, JL Dangl, X Wang, T Zhu
    posted to microarray tesi by talponer on 2008-01-25 16:27:52 as ** along with 1 person jess_m
  • Monitoring the Switch from Housekeeping to Pathogen Defense Metabolism in Arabidopsis thaliana Using cDNA Arrays
    J. Biol. Chem., Vol. 277, No. 12. (15 March 2002), pp. 10555-10561.
    by Marcel Scheideler, Nikolaus L Schlaich, Kurt Fellenberg, Tim Beissbarth, Nicole C Hauser, Martin Vingron, Alan J Slusarenko, Jorg D Hoheisel
    posted to microarray tesi by talponer on 2008-01-25 16:25:15 as **
  • Coordinated plant defense responses in Arabidopsis revealed by microarray analysis
    Proceedings of the National Academy of Sciences, Vol. 97, No. 21. (10 October 2000), pp. 11655-11660.
    by Peer M Schenk, Kemal Kazan, Iain Wilson, Jonathan P Anderson, Todd Richmond, Shauna C Somerville, John M Manners
    posted to microarray tesi by talponer on 2008-01-25 16:23:23 as **
  • A comparison of gel-based, nylon filter and microarray techniques to detect differential RNA expression in plants.
    Curr Opin Plant Biol, Vol. 2, No. 2. (April 1999), pp. 96-103.
    by D Baldwin, V Crane, D Rice
    posted to microarray tesi by talponer on 2008-01-25 16:18:22 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 467-470.
    by M Schena, D Shalon, RW Davis, PO Brown
    posted to microarray tesi by talponer on 2008-01-25 15:53:52 as ** along with 8 people and 1 group frohike shikin dragonrez Dax42 stsaft fisherp jeremymiller tvdbulck GeschwindLab
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