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sunhwans library [96 articles]

Neue Artikel in sunhwans Bibliothek.
  • Dynamical motions of lipids and a finite size effect in simulations of bilayers
    The Journal of Chemical Physics, Vol. 125, No. 14. (2006)
    by Jeffery B Klauda, Bernard R Brooks, Richard W Pastor
    posted to membrane by sunhwan on 2008-10-05 05:06:14 as **
  • Molecular dynamics simulation of a phospholipid membrane
    European Biophysics Journal, Vol. 22, No. 6. (1 February 1994), pp. 423-436.
    by Egbert Egberts, Siewert-Jan Marrink, Herman J Berendsen
    posted to membrane by sunhwan on 2008-10-03 06:35:59 as **
  • Cholesterol-Induced Modifications in Lipid Bilayers: A Simulation Study
    Biophys. J., Vol. 83, No. 4. (1 October 2002), pp. 1842-1853.
    by SW Chiu, Eric Jakobsson, Jay R Mashl, Larry H Scott
    posted to membrane by sunhwan on 2008-10-03 06:35:29 as **
  • Molecular Dynamics Simulations of Phospholipid Bilayers with Cholesterol
    Biophys. J., Vol. 84, No. 4. (1 April 2003), pp. 2192-2206.
    by Christofer Hofsass, Erik Lindahl, Olle Edholm
    posted to membrane by sunhwan on 2008-10-03 06:35:21 as **
  • Structure of Sphingomyelin Bilayers: A Simulation Study
    Biophys. J., Vol. 85, No. 6. (1 December 2003), pp. 3624-3636.
    by SW Chiu, S Vasudevan, Eric Jakobsson, Jay R Mashl, Larry H Scott
    posted to membrane by sunhwan on 2008-10-03 06:35:12 as **
  • Molecular dynamics simulations of hydrophilic pores in lipid bilayers.
    Biophys J, Vol. 86, No. 4. (April 2004), pp. 2156-2164.
    by H Leontiadou, AE Mark, SJ Marrink
    posted to membrane by sunhwan on 2008-10-03 06:35:03 as ** along with 2 people and 3 groups piscinero divadyrral Fluid-Mechanics-and-Thermal-Science-Research Computational_Systems_Biology XMLDataManagement
  • Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study
    Biophys. J., Vol. 86, No. 6. (1 June 2004), pp. 3461-3472.
    by Andrey A Gurtovenko, Michael Patra, Mikko Karttunen, Ilpo Vattulainen
    posted to membrane by sunhwan on 2008-10-03 06:34:54 as ** along with 2 people softsimu robertvacha
  • Molecular Dynamics Simulations and 2H NMR Study of the GalCer/DPPG Lipid Bilayer
    Biophys. J., Vol. 88, No. 6. (1 June 2005), pp. 4017-4031.
    by T Zaraiskaya, KR Jeffrey
    posted to no-tag by sunhwan on 2008-10-03 06:34:46 as **
  • Molecular Simulation Study of Structural and Dynamic Properties of Mixed DPPC/DPPE Bilayers.
    Biophys J (13 March 2006)
    by Sukit Leekumjorn, Amadeu K K Sum
    posted to membrane by sunhwan on 2008-10-03 06:34:37 as ** along with 4 people dimka yoel_rf easybakemuffin softsimu
  • Comparing Experimental and Simulated Pressure-Area Isotherms for DPPC
    Biophys. J., Vol. 94, No. 8. (15 April 2008), pp. 2965-2986.
    by Susan L Duncan, Ronald G Larson
    posted to no-tag by sunhwan on 2008-10-03 06:34:26 as ** along with 2 people and 1 group paulschlesinger sobolevnrm baker-group
  • Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects
    Biophys. J. (25 January 2008), biophysj.107.116335.
    by Sun-Joo Lee, Yuhua Song, Nathan A Baker
    posted to no-tag by sunhwan on 2008-10-03 06:34:16 as ** along with 4 people and 1 group robertvacha sunnytov sobolevnrm paulschlesinger baker-group
  • Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane.
    Biophys. J., Vol. 69, No. 4. (1 October 1995), pp. 1230-1245.
    by SW Chiu, M Clark, V Balaji, S Subramaniam, HL Scott, E Jakobsson
    posted to no-tag by sunhwan on 2008-10-03 06:34:02 as **
  • Chemical & Engineering News: Latest News - Proteins Caught In The Act
    posted to no-tag by sunhwan on 2008-10-02 18:23:42 as **
  • Energy landscape along an enzymatic reaction trajectory: hinges or cracks?
    HFSP Journal, Vol. 2, No. 2. (2008), pp. 61-64.
    by Paul C Whitford, José N Onuchic, Peter G Wolynes
    posted to no-tag by sunhwan on 2008-10-02 18:23:12 as ** along with 2 people barry aqeel
  • Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation
    Current Opinion in Structural Biology, Vol. 17, No. 2. (April 2007), pp. 181-186.
    by Hagai Meirovitch
    posted to no-tag by sunhwan on 2008-10-02 18:23:06 as ** along with 3 people and 1 group aqeel dmobley cchang group
  • Computing conformational free energy by deactivated morphing
    The Journal of Chemical Physics, Vol. 129, No. 13. (2008)
    by Sanghyun Park, Albert Y Lau, Benoît Roux
    posted to no-tag by sunhwan on 2008-10-02 18:22:54 as ** along with 1 person agrossfield
  • Modelling Myc inhibition as a cancer therapy
    Nature (17 August 2008)
    by Laura Soucek, Jonathan Whitfield, Carla P Martins, Andrew J Finch, Daniel J Murphy, Nicole M Sodir, Anthony N Karnezis, Lamorna B Swigart, Sergio Nasi, Gerard I Evan
    posted to no-tag by sunhwan on 2008-10-02 18:22:33 as ** along with 1 person jfr
  • Water at an electrochemical interface-a simulation study
    Faraday Discuss. (2009)
    by Adam P Willard, Stewart K Reed, Paul A Madden, David Chandler
    posted to no-tag by sunhwan on 2008-10-02 18:22:24 as **
  • Molecular Recognition of Histidine-Tagged Molecules by Metal-Chelating Lipids Monitored by Fluorescence Energy Transfer and Correlation Spectroscopy
    J. Am. Chem. Soc., Vol. 120, No. 12. (1 April 1998), pp. 2753-2763.
    by IT Dorn, KR Neumaier, R Tampe
    posted to no-tag by sunhwan on 2008-10-02 18:20:39 as ** along with 1 person paulschlesinger
  • Make Life Simple: Unleash the Full Power of the Parallel Tempering Algorithm
    Physical Review Letters, Vol. 101, No. 13. (2008)
    by Elmar Bittner, Andreas N Baumer, Wolfhard Janke
    posted to no-tag by sunhwan on 2008-10-02 18:20:19 as **
  • A mathematical model for brain tumor response to radiation therapy
    Journal of Mathematical Biology
    by R Rockne, E Alvord, J Rockhill, K Swanson
    posted to no-tag by sunhwan on 2008-10-02 18:20:08 as **
  • Calculation of Absolute Ligand Binding Free Energy to a Ribosome-Targeting Protein as a Function of Solvent Model
    J. Phys. Chem. B (27 September 2008)
    by Michael S Lee, Mark A Olson
    posted to no-tag by sunhwan on 2008-10-02 18:20:00 as **
  • Advanced Genomic Data Mining
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000121.
    by Xosé M Fernández-Suárez, Ewan Birney
    posted to no-tag by sunhwan on 2008-10-02 18:19:47 as ** along with 16 people and 1 group kshameer jfr jyuh taguchi giovenko inesdesantiago usagi-kirin fgibson cisevol rdiaz aramesh2 druvus mitko jandot jameswasmuth dullhunk BergmanLab
  • Lipid flip-flop driven mechanical and morphological changes in model membranes
    The Journal of Chemical Physics, Vol. 129, No. 12. (2008)
    by Sanoop Ramachandran, Sunil PB Kumar, Mohamed Laradji
    posted to no-tag by sunhwan on 2008-10-02 18:19:34 as ** along with 1 person paulschlesinger
  • Hydration dynamics of purple membranes
    Faraday Discuss. (2009)
    by Douglas J Tobias, Neelanjana Sengupta, Mounir Tarek
    posted to no-tag by sunhwan on 2008-10-02 18:19:28 as **
  • Predicting protein function from domain content
    Bioinformatics, Vol. 24, No. 19. (1 October 2008), 2275.
    by Kristoffer Forslund, Erik L Sonnhammer
    posted to no-tag by sunhwan on 2008-10-02 18:19:19 as **
  • Mixture models for protein structure ensembles
    Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2184-2192.
    by Michael Hirsch, Michael Habeck
    posted to no-tag by sunhwan on 2008-10-02 18:19:08 as ** along with 1 person i000
  • Site-Specific Evolutionary Rates in Proteins Are Better Modeled as Non-Independent and Strictly Relative
    Bioinformatics (28 July 2008), btn395.
    by Andrew D Fernandes, William R Atchley
    posted to no-tag by sunhwan on 2008-10-02 18:18:58 as ** along with 1 person and 1 group djkt iSEEM
  • Theory of simple biochemical “shape recognition” via diffusion from activator coated nanoshapes
    The Journal of Chemical Physics, Vol. 129, No. 12. (2008)
    by DR Daniels
    posted to no-tag by sunhwan on 2008-10-02 18:18:42 as **
  • The effect of salt on the melting of ice: A molecular dynamics simulation study
    The Journal of Chemical Physics, Vol. 129, No. 12. (2008)
    by Jun S Kim, Arun Yethiraj
    posted to no-tag by sunhwan on 2008-10-02 18:17:09 as **
  • On the simulated scaling based free energy simulations: Adaptive optimization of the scaling parameter intervals
    The Journal of Chemical Physics, Vol. 129, No. 12. (2008)
    by Lianqing Zheng, Wei Yang
    posted to no-tag by sunhwan on 2008-10-02 18:16:55 as **
  • Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Theresa A Ramelot, Srivatsan Raman, Alexandre P Kuzin, Rong Xiao, Li-Chung Ma, Thomas B Acton, John F Hunt, Gaetano T Montelione, David Baker, Michael A Kennedy
    posted to no-tag by sunhwan on 2008-10-02 18:13:53 as ** along with 1 person neils
  • The Dynamic Orientation of Membrane-Bound Peptides: Bridging Simulations and Experiments
    Biophys. J., Vol. 93, No. 12. (15 December 2007), pp. 4278-4288.
    by Santi Esteban-Martin, Jesus Salgado
    posted to no-tag by sunhwan on 2008-10-02 18:13:41 as ** along with 1 person paulschlesinger
  • Kinetic Analysis of Permeation of Mitochondria-Targeted Antioxidants Across Bilayer Lipid Membranes
    Journal of Membrane Biology
    by Tatyana Rokitskaya, Sergey Klishin, Inna Severina, Vladimir Skulachev, Yuri Antonenko
    posted to no-tag by sunhwan on 2008-10-02 18:12:48 as **
  • Mathematical modelling of the influence of heat shock proteins on cancer invasion of tissue
    Journal of Mathematical Biology
    by Zuzanna Szymańska, Jakub Urbański, Anna Marciniak-Czochra
    posted to no-tag by sunhwan on 2008-10-02 18:12:44 as **
  • Probing the Lipid Membrane Dipole Potential
    Biophys. J. (19 September 2008), biophysj.108.136507.
    by Yi Yang, Kathryn M Mayer, Nissanka S Wickremasinghe, Jason H Hafner
    posted to no-tag by sunhwan on 2008-10-02 18:12:07 as ** along with 2 people agrossfield paulschlesinger
  • Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer
    Biochemistry (2 October 2008)
    by Peter J Bond, Chze L Wee, Mark S Sansom
    posted to no-tag by sunhwan on 2008-10-02 18:10:47 as ** along with 2 people agrossfield paulschlesinger
  • Diffusion of Macromolecules on Lipid Vesicles
    Langmuir (2 October 2008)
    by WT Góźdź
    posted to no-tag by sunhwan on 2008-10-02 18:10:38 as ** along with 1 person paulschlesinger
  • CONFORMATIONAL TRANSITION PATHWAYS EXPLORED BY MONTE CARLO SIMULATION INTEGRATED WITH COLLECTIVE MODES
    Biophys. J. (1 August 2008), biophysj.107.128447.
    by Nigar Kantarci-Carsibasi, Turkan Haliloglu, Pemra Doruker
    posted to no-tag by sunhwan on 2008-10-02 18:10:22 as ** along with 2 people viktor21614 aqeel
  • Membrane mechanics as a probe of ion-channel gating mechanisms
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 78, No. 4. (2008)
    by Daniel Reeves, Tristan Ursell, Pierre Sens, Jane Kondev, Rob Phillips
    posted to no-tag by sunhwan on 2008-10-02 04:34:12 as ** along with 1 person paulschlesinger
  • Cholesterol Interactions with Fluid-Phase Phospholipids: Effect on the Lateral Organization of the Bilayer
    Biophys. J., Vol. 95, No. 8. (15 October 2008), pp. 3861-3871.
    by Katrin K Halling, Bodil Ramstedt, Joel H Nystrom, Peter J Slotte, Thomas K Nyholm
    posted to no-tag by sunhwan on 2008-10-02 04:31:33 as ** along with 1 person paulschlesinger
  • Nonlinear Poisson--Boltzmann model of charged lipid membranes: Accounting for the presence of zwitterionic lipids
    The Journal of Chemical Physics, Vol. 129, No. 12. (2008)
    by Demmelash H Mengistu, Sylvio May
    posted to no-tag by sunhwan on 2008-09-30 19:03:37 as ** along with 2 people agrossfield paulschlesinger
  • SIGGRAPH 2008: CUDA
    posted to no-tag by sunhwan on 2008-09-17 03:11:52 as **
  • Reconstructing atomistic detail for coarse-grained models with resolution exchange
    The Journal of Chemical Physics, Vol. 129, No. 11. (2008)
    by Pu Liu, Qiang Shi, Edward Lyman, Gregory A Voth
    posted to no-tag by sunhwan on 2008-09-17 03:10:49 as ** along with 1 person agrossfield
  • Molecular signatures of ribosomal evolution
    Proceedings of the National Academy of Sciences (2008)
    by Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R Woese, Zaida Luthey-Schulten
    posted to no-tag by sunhwan on 2008-09-17 03:10:37 as ** along with 3 people eroberts00 bpcusack skato_toyaku
  • On the relationship between folding and chemical landscapes in enzyme catalysis
    Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (2008), pp. 13877-13882.
    by Maite Roca, Benjamin Messer, Donald Hilvert, Arieh Warshel
    posted to no-tag by sunhwan on 2008-09-17 03:10:15 as ** along with 1 person skoddet
  • Cooperativity, connectivity, and folding pathways of multidomain proteins
    Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (2008), pp. 13865-13870.
    by Kazuhito Itoh, Masaki Sasai
    posted to no-tag by sunhwan on 2008-09-17 03:10:01 as ** along with 1 person apaydin
  • Implicit Solvent Electrostatics in Biomolecular Simulation
    New Algorithms for Macromolecular Simulation (2006), pp. 263-295.
    by Nathan Baker, Donald Bashford, David Case
    posted to no-tag by sunhwan on 2008-09-17 03:02:11 as ** along with 2 people onufriev qwermish
  • Nitrogen regulation in bacteria and archaea.
    Annual review of microbiology, Vol. 61 (2007), pp. 349-377.
    by JA Leigh, JA Dodsworth
    posted to no-tag by sunhwan on 2008-04-26 01:55:13 as ** along with 1 person fhsantanna
  • Very fast empirical prediction and rationalization of protein pKa values.
    Proteins, Vol. 61, No. 4. (1 December 2005), pp. 704-721.
    by H Li, AD Robertson, JH Jensen
    posted to no-tag by sunhwan on 2008-04-26 01:55:00 as ** along with 6 people and 1 group RamuAnandakrishnan gisle bicko sim82 barry mschofie Bioinformatics
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