stajichs Zhang [18 articles]

Recent papers posted to stajichs library by the author Zhang. You can also see everyones Zhang.

Moniliophthora perniciosa, the causal agent of witches broom disease of cacao: what's new from this old foe?

Molecular Plant Pathology, Vol. 9, No. 5. (September 2008), pp. 577-588.

by Lyndel W Meinhardt, Johana Rincones, Bryan A Bailey, Catherine M Aime, Gareth W Griffith, Dapeng Zhang, Goncalo A Pereira

posted to moniliophthora genome cacao by stajich on 2008-11-23 21:20:49 as

along with 1 person and 1 group GustavoLacerda Berkeley Mycology

Model-based Analysis of ChIP-Seq (MACS)

Genome Biology, Vol. 9, No. 9. (2008)

by Yong Zhang, Tao Liu, Clifford Meyer, Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, Xiaole Liu

posted to solexa shortread methods computational_biology chipseq bioinformatics binding_site by stajich on 2008-09-26 16:02:11 as

along with 11 people and 1 group polivares gdb ghattem yadadi djkt mdperry fpattyn bcondon idonaldson caseybrown kengg Berkeley Mycology

Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici

BMC Genomics, Vol. 9 (01 May 2008), 203.

by Yonghong Zhang, Zhipeng Qu, Wenming Zheng, Bo Liu, Xiaojie Wang, Xiaodan Xue, Liangsheng Xu, Lili Huang, Qingmei Han, Jie Zhao, Zhensheng Kang

posted to development gene_expression puccinia rust sexual_development by stajich on 2008-07-07 03:35:47 as

along with 1 group Berkeley Mycology

Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer.

Molecular biology and evolution, Vol. 25, No. 2. (February 2008), pp. 265-276.

by N Cusimano, LB Zhang, SS Renner

posted to horizontal_gene_transfer intron_evolution plants by stajich on 2008-05-25 20:58:05 as

along with 1 group Berkeley Mycology

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

Genome Res. (7 February 2008), gr.7080508.

by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu

posted to chipseq sequencing solexa by stajich on 2008-05-02 02:05:43 as

along with 11 people and 2 groups jfr kengg djkt xiaobeizhao cabbagezs idonaldson caseybrown magusina lp2 gracio gdb BergmanLab Berkeley Mycology

Positive selection acting on splicing motifs reflects compensatory evolution

Genome Res. (18 January 2008), gr.070268.107.

by Shengdong Ke, Xiang H Zhang, Lawrence A Chasin

posted to motif positive_selection splicing by stajich on 2008-04-10 22:27:19 as

along with 4 people and 1 group operon bpcusack cjeans gjuggler Berkeley Mycology

Natural selection of protein structural and functional properties: a SNP perspective

Genome Biology, Vol. 9, No. 4. (2008)

by Jinfeng Liu, Yan Zhang, Xingye Lei, Zemin Zhang

posted to molecular_evolution natural_selection polymorphism snp by stajich on 2008-04-09 00:01:16 as

along with 4 people and 1 group operon fernan ramensky dandaman Berkeley Mycology

Characterization of hypovirus-derived small RNAs generated in the chestnut blight fungus by an inducible DCL-2-dependent pathway.

J Virol, Vol. 82, No. 6. (March 2008), pp. 2613-2619.

by X Zhang, GC Segers, Q Sun, F Deng, DL Nuss

posted to cryphonectria dicer mycovirus noncoding_rna rna_gene rnai rna_silencing by stajich on 2008-03-17 04:07:20 as

along with 1 group Berkeley Mycology

Evidence that RNA silencing functions as an antiviral defense mechanism in fungi

Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12902-12906.

by Gert C Segers, Xuemin Zhang, Fuyou Deng, Qihong Sun, Donald L Nuss

posted to cryphonectria fungi mycovirus rnai rna_silencing virulence by stajich on 2008-03-17 04:06:11 as

along with 1 person and 1 group GustavoLacerda Berkeley Mycology

Genome structure and emerging evidence of an incipient sex chromosome in Populus

Genome Res. (6 February 2008), gr.7076308.

by Tongming Yin, Stephen P Difazio, Lee E Gunter, Xinye Zhang, Michell M Sewell, Scott A Woolbright, Gery J Allan, Collin T Kelleher, Carl J Douglas, Mingxiu Wang, Gerald A Tuskan

posted to genome_evolution plant populus sex_chromosome tree by stajich on 2008-02-29 21:46:26 as

along with 4 people and 1 group druvus natstreet yoonk cabbagesofdoom Berkeley Mycology

The genome sequence of the malaria mosquito Anopheles gambiae.

Science, Vol. 298, No. 5591. (4 October 2002), pp. 129-149.

by RA Holt, GM Subramanian, A Halpern, GG Sutton, R Charlab, DR Nusskern, P Wincker, AG Clark, JM Ribeiro, R Wides, SL Salzberg, B Loftus, M Yandell, WH Majoros, DB Rusch, Z Lai, CL Kraft, JF Abril, V Anthouard, P Arensburger, PW Atkinson, H Baden, V de Berardinis, D Baldwin, V Benes, J Biedler, C Blass, R Bolanos, D Boscus, M Barnstead, S Cai, A Center, K Chaturverdi, GK Christophides, MA Chrystal, M Clamp, A Cravchik, V Curwen, A Dana, A Delcher, I Dew, CA Evans, M Flanigan, A Grundschober-Freimoser, L Friedli, Z Gu, P Guan, R Guigo, ME Hillenmeyer, SL Hladun, JR Hogan, YS Hong, J Hoover, O Jaillon, Z Ke, C Kodira, E Kokoza, A Koutsos, I Letunic, A Levitsky, Y Liang, JJ Lin, NF Lobo, JR Lopez, JA Malek, TC McIntosh, S Meister, J Miller, C Mobarry, E Mongin, SD Murphy, DA O'Brochta, C Pfannkoch, R Qi, MA Regier, K Remington, H Shao, MV Sharakhova, CD Sitter, J Shetty, TJ Smith, R Strong, J Sun, D Thomasova, LQ Ton, P Topalis, Z Tu, MF Unger, B Walenz, A Wang, J Wang, M Wang, X Wang, KJ Woodford, JR Wortman, M Wu, A Yao, EM Zdobnov, H Zhang, Q Zhao, S Zhao, SC Zhu, I Zhimulev, M Coluzzi, A della Torre, CW Roth, C Louis, F Kalush, RJ Mural, EW Myers, MD Adams, HO Smith, S Broder, MJ Gardner, CM Fraser, E Birney, P Bork, PT Brey, JC Venter, J Weissenbach, FC Kafatos, FH Collins, SL Hoffman

posted to anopheles genome_paper mosquito by stajich on 2007-12-16 01:03:05 as

along with 8 people and 4 groups pdolan sdinka jwortman jmeppley marcius meister1975 niallhaslam Neeperando BioinfoCIPF SGU-CIPF Berkeley Mycology Notre Dame Bioinformatics

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521.

by RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, S Scherer, G Scott, D Steffen, KC Worley, PE Burch, G Okwuonu, S Hines, L Lewis, C DeRamo, O Delgado, S Dugan-Rocha, G Miner, M Morgan, A Hawes, R Gill, Celera, RA Holt, MD Adams, PG Amanatides, H Baden-Tillson, M Barnstead, S Chin, CA Evans, S Ferriera, C Fosler, A Glodek, Z Gu, D Jennings, CL Kraft, T Nguyen, CM Pfannkoch, C Sitter, GG Sutton, JC Venter, T Woodage, D Smith, HM Lee, E Gustafson, P Cahill, A Kana, L Doucette-Stamm, K Weinstock, K Fechtel, RB Weiss, DM Dunn, ED Green, RW Blakesley, GG Bouffard, PJ De Jong, K Osoegawa, B Zhu, M Marra, J Schein, I Bosdet, C Fjell, S Jones, M Krzywinski, C Mathewson, A Siddiqui, N Wye, J McPherson, S Zhao, CM Fraser, J Shetty, S Shatsman, K Geer, Y Chen, S Abramzon, WC Nierman, PH Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, B Li, Y Liu, X Qin, S Cawley, KC Worley, AJ Cooney, LM D'Souza, K Martin, JQ Wu, ML Gonzalez-Garay, AR Jackson, KJ Kalafus, MP McLeod, A Milosavljevic, D Virk, A Volkov, DA Wheeler, Z Zhang, JA Bailey, EE Eichler, E Tuzun, E Birney, E Mongin, A Ureta-Vidal, C Woodwark, E Zdobnov, P Bork, M Suyama, D Torrents, M Alexandersson, BJ Trask, JM Young, H Huang, H Wang, H Xing, S Daniels, D Gietzen, J Schmidt, K Stevens, U Vitt, J Wingrove, F Camara, M Mar Albà, JF Abril, R Guigo, A Smit, I Dubchak, EM Rubin, O Couronne, A Poliakov, N Hübner, D Ganten, C Goesele, O Hummel, T Kreitler, YA Lee, J Monti, H Schulz, H Zimdahl, H Himmelbauer, H Lehrach, HJ Jacob, S Bromberg, J Gullings-Handley, MI Jensen-Seaman, AE Kwitek, J Lazar, D Pasko, PJ Tonellato, S Twigger, CP Ponting, JM Duarte, S Rice, L Goodstadt, SA Beatson, RD Emes, EE Winter, C Webber, P Brandt, G Nyakatura, M Adetobi, F Chiaromonte, L Elnitski, P Eswara, RC Hardison, M Hou, D Kolbe, K Makova, W Miller, A Nekrutenko, C Riemer, S Schwartz, J Taylor, S Yang, Y Zhang, K Lindpaintner, TD Andrews, M Caccamo, M Clamp, L Clarke, V Curwen, R Durbin, E Eyras, SM Searle, GM Cooper, S Batzoglou, M Brudno, A Sidow, EA Stone, JC Venter, BA Payseur, G Bourque, C López-Otín, XS Puente, K Chakrabarti, S Chatterji, C Dewey, L Pachter, N Bray, VB Yap, A Caspi, G Tesler, PA Pevzner, D Haussler, KM Roskin, R Baertsch, H Clawson, TS Furey, AS Hinrichs, D Karolchik, WJ Kent, KR Rosenbloom, H Trumbower, M Weirauch, DN Cooper, PD Stenson, B Ma, M Brent, M Arumugam, D Shteynberg, RR Copley, MS Taylor, H Riethman, U Mudunuri, J Peterson, M Guyer, A Felsenfeld, S Old, S Mockrin, F Collins,

posted to comparative_genomics genome_paper rat by stajich on 2007-12-16 01:02:12 as

along with 6 people and 4 groups gjuggler aprasad ccots rvosa dchughes djkt FAB-lab G4ID Genetics-of-Gambling Berkeley Mycology

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234.

by Rhesus, Richard A Gibbs, Jeffrey Rogers, Michael G Katze, Roger Bumgarner, George M Weinstock, Elaine R Mardis, Karin A Remington, Robert L Strausberg, Craig J Venter, Richard K Wilson, Mark A Batzer, Carlos D Bustamante, Evan E Eichler, Matthew W Hahn, Ross C Hardison, Kateryna D Makova, Webb Miller, Aleksandar Milosavljevic, Robert E Palermo, Adam Siepel, James M Sikela, Tony Attaway, Stephanie Bell, Kelly E Bernard, Christian J Buhay, Mimi N Chandrabose, Marvin Dao, Clay Davis, Kimberly D Delehaunty, Yan Ding, Huyen H Dinh, Shannon Dugan-Rocha, Lucinda A Fulton, Ramatu A Gabisi, Toni T Garner, Jennifer Godfrey, Alicia C Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Ziad M Khan, Ewen F Kirkness, Andrew Cree, Gerald R Fowler, Sandra Lee, Lora R Lewis, Zhangwan Li, Yih-Shin Liu, Stephanie M Moore, Donna Muzny, Lynne V Nazareth, Dinh N Ngo, Geoffrey O Okwuonu, Grace Pai, David Parker, Heidie A Paul, Cynthia Pfannkoch, Craig S Pohl, Yu-Hui Rogers, San J Ruiz, Aniko Sabo, Jireh Santibanez, Brian W Schneider, Scott M Smith, Erica Sodergren, Amanda F Svatek, Teresa R Utterback, Selina Vattathil, Wesley Warren, Courtney S White, Asif T Chinwalla, Yucheng Feng, Aaron L Halpern, Ladeana W Hillier, Xiaoqiu Huang, Pat Minx, Joanne O Nelson, Kymberlie H Pepin, Xiang Qin, Granger G Sutton, Eli Venter, Brian P Walenz, John W Wallis, Kim C Worley, Shiaw-Pyng Yang, Steven M Jones, Marco A Marra, Mariano Rocchi, Jacqueline E Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, Alan R Harris, Paul Havlak, Andrew R Jackson, Huaiyang Jiang, Yue Liu, David N Messina, Yufeng Shen, Henry X Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K Konkel, Jungnam Lee, Arian F Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E Karro, Jian Ma, Brian Raney, Xinwei She, Michael J Cox, Jeffery P Demuth, Laura J Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H Kim, Jonathan R Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J Hubisz, Amit Indap, Carolin Kosiol, Bruce T Lahn, Heather A Lawson, Alison Marklein, Rasmus Nielsen, Eric J Vallender, Andrew G Clark, Betsy Ferguson, Ryan D Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G Smith, David A Wheeler, Ian Schenck, Edward V Ball, Rui Chen, David N Cooper, Belinda Giardine, Fan Hsu, James W Kent, Arthur Lesk, David L Nelson, William E O'Brien, Kay Prufer, Peter D Stenson, James C Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P Xiang, Fan Yang, Galt P Barber, David Haussler, Donna Karolchik, Andy D Kern, Robert M Kuhn, Kayla E Smith, Ann S Zwieg

posted to genome_paper macaque primate by stajich on 2007-12-16 01:01:33 as

along with 5 people and 4 groups bb805 dchughes djkt hpaces Garamonfok Bioinformatics G4ID Genetics-of-Gambling Berkeley Mycology

Cloning and Expression of an -Amylase Gene from Phanerochaete chrysosporium

Current Microbiology, Vol. 55, No. 2. (August 2007), pp. 105-113.

by Wu, Bo, Hu, Guo-Ku, Feng, Hong, Wu, Jin-Ming, Zhang, Yi-Zheng

posted to alpha_amylase phanerochaete rotting by stajich on 2007-10-31 05:22:03 as

Genome-wide identification of spliced introns using a tiling microarray

Genome Res., Vol. 17, No. 4. (1 April 2007), pp. 503-509.

by Zhihong Zhang, Jay R Hesselberth, Stanley Fields

posted to intron microarray saccharomyces by stajich on 2007-10-15 02:01:37 as

along with 1 person mdimon

Role of Glucan and Surface Protein BAD1 in Complement Activation by Blastomyces dermatitidis Yeast