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stajichs Stajich [17 articles]

Recent papers posted to stajichs library by the author Stajich. You can also see everyones Stajich.
  • Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans
    Genome Biology, Vol. 9 (22 February 2008), R41.
    by Guanggan Hu, Iris Liu, Anita Sham, Jason E Stajich, Fred S Dietrich, James W Kronstad
    posted to cgh comparative_genomics cryptococcus fungi by stajich on 2008-05-19 06:48:44 as read along with 1 group Berkeley Mycology
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to briggsae caenorhabditis comparative_genomics genome_paper nematode by stajich on 2007-12-16 01:00:16 as ** along with 2 people and 2 groups tharris sujaikumar C. elegans / WormBase Berkeley Mycology
  • Comparative genomic analysis of fungal genomes reveals intron rich ancestors
    Genome Biology, Vol. 8 (19 October 2007), R223.
    by Jason E Stajich, Fred S Dietrich, Scott W Roy
    posted to fungi intron_evolution intron_loss by stajich on 2007-12-16 00:53:30 as read along with 3 people biomcgary seitentaisei druvus
  • The Cryptococcus neoformans catalase gene family and its role in antioxidant defense.
    Eukaryot Cell, Vol. 5, No. 9. (September 2006), pp. 1447-1459.
    by SS Giles, JE Stajich, C Nichols, QD Gerrald, JA Alspaugh, F Dietrich, JR Perfect
    posted to antioxidant cryptococcus defense fungal fungi by stajich on 2007-10-03 01:53:51 as read
  • The evolution of Mammalian gene families.
    PLoS ONE, Vol. 1 (2006)
    by JP Demuth, TD Bie, JE Stajich, N Cristianini, MW Hahn
    posted to evolution gene_family mammal by stajich on 2007-05-22 06:35:12 as read along with 1 person bpcusack
  • Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi
    Journal of Molecular Biology, Vol. 368, No. 1. (20 April 2007), pp. 273-282.
    by Luke B Harrison, Zhan Yu, Jason E Stajich, Fred S Dietrich, Paul M Harrison
    posted to evolution fungi prion yeast by stajich on 2007-05-22 06:34:46 as read
  • Evolution of the Mating Type Locus: Insights Gained from the Dimorphic Primary Fungal Pathogens Histoplasma capsulatum, Coccidioides immitis, and Coccidioides posadasii
    Eukaryotic Cell, Vol. 6, No. 4. (1 April 2007), pp. 622-629.
    by James A Fraser, Jason E Stajich, Eric J Tarcha, Garry T Cole, Diane O Inglis, Anita Sil, Joseph Heitman
    posted to coccidioides coccipaper evolution histoplasma mating_type by stajich on 2007-05-22 06:34:19 as read
  • Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
    Eukaryot Cell, Vol. 5, No. 5. (May 2006), pp. 789-793.
    by JE Stajich, FS Dietrich
    posted to cryptococcus fungi intron by stajich on 2007-05-22 06:18:15 as read along with 3 people and 3 groups dalloliogm raylim seitentaisei Web2 splicing yeast
  • The Bioperl Toolkit: Perl Modules for the Life Sciences
    Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618.
    by Jason E Stajich, David Block, Kris Boulez, Steven E Brenner, Stephen A Chervitz, Chris Dagdigian, Georg Fuellen, James G Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J Mungall, Brian I Osborne, Matthew R Pocock, Peter Schattner, Martin Senger, Lincoln D Stein, Elia Stupka, Mark D Wilkinson, Ewan Birney
    posted to bioinformatics bioperl perl by stajich on 2006-12-08 21:13:56 as read along with 17 people and 2 groups jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to caenorhabditis comparative_genomics genome genome_evolution by stajich on 2006-12-08 21:09:37 as read along with 2 people and 1 group indigoviolet sujaikumar EisenLab
  • The generic genome browser: a building block for a model organism system database.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.
    by LD Stein, C Mungall, S Shu, M Caudy, M Mangone, A Day, E Nickerson, JE Stajich, TW Harris, A Arva, S Lewis
    posted to bioinformatics bioperl browser genome by stajich on 2006-12-08 21:08:26 as read along with 7 people and 1 group Cortel indigoviolet dquest natstreet dullhunk tharris farhat EisenLab
  • Open source tools and toolkits for bioinformatics: significance, and where are we?
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296.
    by JE Stajich, H Lapp
    posted to bioinformatics by stajich on 2006-12-08 21:07:31 as read along with 7 people and 2 groups Ayest yas eweaver indigoviolet moborg dgront george_g EisenLab T_lab
  • Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak
    Nature (09 October 2005)
    by James A Fraser, Steven S Giles, Emily C Wenink, Scarlett G Geunes-Boyer, Jo R Wright, Stephanie Diezmann, Andria Allen, Jason E Stajich, Fred S Dietrich, John R Perfect, Joseph Heitman
    posted to cryptococcus by stajich on 2006-12-08 21:06:39 as read
  • Reconstructing the early evolution of Fungi using a six-gene phylogeny
    Nature, Vol. 443, No. 7113., pp. 818-822.
    by Timothy Y James, Frank Kauff, Conrad L Schoch, Brandon P Matheny, Valérie Hofstetter, Cymon J Cox, Gail Celio, Cécile Gueidan, Emily Fraker, Jolanta Miadlikowska, Thorsten H Lumbsch, Alexandra Rauhut, Valérie Reeb, Elizabeth A Arnold, Anja Amtoft, Jason E Stajich, Kentaro Hosaka, Gi-Ho Sung, Desiree Johnson, Ben O’rourke, Michael Crockett, Manfred Binder, Judd M Curtis, Jason C Slot, Zheng Wang, Andrew W Wilson, Arthur Schüßler, Joyce E Longcore, Kerry O’donnell, Sharon Mozley-Standridge, David Porter, Peter M Letcher, Martha J Powell, John W Taylor, Merlin M White, Gareth W Griffith, David R Davies, Richard A Humber, Joseph B Morton, Junta Sugiyama, Amy Y Rossman, Jack D Rogers, Don H Pfister, David Hewitt, Karen Hansen, Sarah Hambleton, Robert A Shoemaker, Jan Kohlmeyer, Brigitte Volkmann-Kohlmeyer, Robert A Spotts, Maryna Serdani, Pedro W Crous, Karen W Hughes, Kenji Matsuura, Ewald Langer, Gitta Langer, Wendy A Untereiner, Robert Lücking, Burkhard Büdel, David M Geiser, André Aptroot, Paul Diederich, Imke Schmitt, Matthias Schultz, Rebecca Yahr, David S Hibbett, François Lutzoni, David J Mclaughlin, Joseph W Spatafora, Rytas Vilgalys
    posted to fungi phylogeny by stajich on 2006-12-08 21:05:26 as ** along with 2 people seitentaisei Patola
  • Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.
    Gene, Vol. 383 (15 November 2006), pp. 24-32.
    by RA Cramer, JE Stajich, Y Yamanaka, FS Dietrich, WJ Steinbach, JR Perfect
    posted to aspergillus fungi nrps phylogenomics by stajich on 2006-12-08 21:04:02 as read along with 1 person and 1 group rvosa FAB-lab
  • A Fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
    BMC Evolutionary Biology, Vol. 6 (22 November 2006), 99.
    by David A Fitzpatrick, Mary E Logue, Jason E Stajich, Geraldine Butler
    posted to evolution fungi phylogeny by stajich on 2006-12-08 21:03:25 as read along with 4 people and 1 group dpollard lusk cmzmasek druvus EisenLab
  • Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
    Nature, Vol. 444, No. 7115., pp. 97-101.
    by Jörg Kämper, Regine Kahmann, Michael Bölker, Li-Jun Ma, Thomas Brefort, Barry J Saville, Flora Banuett, James W Kronstad, Scott E Gold, Olaf Müller, Michael H Perlin, Han AB Wösten, Ronald de Vries, José Ruiz-Herrera, Cristina G Reynaga-Peña, Karen Snetselaar, Michael Mccann, José Pérez-Martín, Michael Feldbrügge, Christoph W Basse, Gero Steinberg, Jose I Ibeas, William Holloman, Plinio Guzman, Mark Farman, Jason E Stajich, Rafael Sentandreu, Juan M González-Prieto, John C Kennell, Lazaro Molina, Jan Schirawski, Artemio Mendoza-Mendoza, Doris Greilinger, Karin Münch, Nicole Rössel, Mario Scherer, Miroslav Vraneš, Oliver Ladendorf, Volker Vincon, Uta Fuchs, Björn Sandrock, Shaowu Meng, Eric CH Ho, Matt J Cahill, Kylie J Boyce, Jana Klose, Steven J Klosterman, Heine J Deelstra, Lucila Ortiz-Castellanos, Weixi Li, Patricia Sanchez-Alonso, Peter H Schreier, Isolde Häuser-Hahn, Martin Vaupel, Edda Koopmann, Gabi Friedrich, Hartmut Voss, Thomas Schlüter, Jonathan Margolis, Darren Platt, Candace Swimmer, Andreas Gnirke, Feng Chen, Valentina Vysotskaia, Gertrud Mannhaupt, Ulrich Güldener, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Hans-Werner Mewes, Evan W Mauceli, David Decaprio, Claire M Wade, Jonathan Butler, Sarah Young, David B Jaffe, Sarah Calvo, Chad Nusbaum, James Galagan, Bruce W Birren
    posted to fungal genome genome_paper plantpathogen ustilago by stajich on 2006-12-07 01:32:24 as read along with 2 people alexl bootsy
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