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softsimus Karttunen [90 articles]

Recent papers posted to softsimus library by the author Karttunen. You can also see everyones Karttunen.
  • Microscopic Mechanism for Cold Denaturation
    Physical Review Letters, Vol. 100, No. 11. (2008)
    by Cristiano L Dias, Tapio A Nissila, Mikko Karttunen, Ilpo Vattulainen, Martin Grant
    posted to cold-denaturation by softsimu on 2008-04-09 16:06:47 as **
  • Influence of Ethanol on Lipid Membranes: From Lateral Pressure Profiles to Dynamics and Partitioning
    J. Phys. Chem. B, Vol. 112, No. 13. (3 April 2008), pp. 4131-4139.
    by E Terama, OHS Ollila, E Salonen, AC Rowat, C Trandum, P Westh, M Patra, M Karttunen, I Vattulainen
    posted to ethanol pressure-profile by softsimu on 2008-04-09 16:05:41 as **
  • Role of phosphatidylglycerols in the stability of bacterial membranes
    Biochimie, Vol. 90 (2008), pp. 930-938.
    by Wei Zhao, Tomasz Rog, Andrey A Gurtovenko, Ilpo Vattulainen, Mikko Karttunen
    posted to bacterial pope popg by softsimu on 2008-04-01 21:21:28 as **
  • Phase diagram of pinned lattices in the phase field crystal model
    Journal of Physics: Conference Series, Vol. 100, No. 7. (2008), 072001.
    by CV Achim, M Karttunen, Elder, E Granato, T Ala-Nissila, SC Ying
    posted to pfc by softsimu on 2008-03-27 15:16:59 as **
  • Nonpolar interactions between trans-membrane helical EGF peptide and phosphatidylcholines, sphingomyelins and cholesterol. Molecular dynamics simulation studies
    Journal of Peptide Science, Vol. 14, No. 4. (2008), pp. 374-382.
    by Tomasz Róg, Krzysztof Murzyn, Mikko Karttunen, Marta Pasenkiewicz-Gierula
    posted to cholesterol egf peptides popc by softsimu on 2008-03-17 14:55:33 as **
  • Significance of Cholesterol Methyl Groups
    J. Phys. Chem. B, Vol. 112, No. 10. (13 March 2008), pp. 2922-2929.
    by S Poyry, T Rog, M Karttunen, I Vattulainen
    posted to cholesterol sterols by softsimu on 2008-03-06 21:47:47 as ** along with 2 people and 1 group sobolevnrm dimka baker-group
  • Molecular dynamics simulations of the enzyme Catechol-O-Methyltransferase: methodological issues
    SAR and QSAR in Environmental Research, Vol. 19, No. 1. (2008), pp. 179-189.
    by A Bunker, PT Männistö, St. Pierre, T Róg, P Pomorski, L Stimson, M Karttunen
    posted to comt by softsimu on 2008-03-05 21:01:38 as ** along with 1 person Terkko
  • Structure of Spheroidal HDL Particles Revealed by Combined Atomistic and Coarse-Grained Simulations
    Biophys. J., Vol. 94, No. 6. (15 March 2008), pp. 2306-2319.
    by Andrea Catte, James C Patterson, Denys Bashtovyy, Martin K Jones, Feifei Gu, Ling Li, Aldo Rampioni, Durba Sengupta, Timo Vuorela, Perttu Niemela, Mikko Karttunen, Siewert J Marrink, Ilpo Vattulainen, Jere P Segrest
    posted to coarse-graining hdl by softsimu on 2008-03-05 20:55:23 as ** along with 1 person sunnytov
  • Strain hardening, avalanches, and strain softening in dense cross-linked actin networks
    Phys. Rev. E, Vol. 77 (2008), 051913.
    by JA Åström, Sunil P Kumar, I Vattulainen, M Karttunen
    posted to actin by softsimu on 2008-02-25 16:49:12 as **
  • Replacing the Cholesterol Hydroxyl Group with the Ketone Group Facilitates Sterol Flip-Flop and Promotes Membrane Fluidity
    J. Phys. Chem. B (25 January 2008)
    by T Rog, LM Stimson, M Pasenkiewicz-Gierula, I Vattulainen, M Karttunen
    posted to cholesterol flip-flop ketosterol by softsimu on 2008-02-16 17:58:13 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • Molecular dynamics of a microscopic droplet on solid surface
    Physical Review Letters, Vol. 69, No. 1. (6 July 1992), 124.
    by JA Nieminen, DB Abraham, M Karttunen, K Kaski
    posted to wetting by softsimu on 2008-01-23 15:08:38 as **
  • Morphological transitions and bistability in Turing systems
    Physical Review E, Vol. 70, No. 6. (3 December 2004), 066202.
    by Teemu Leppänen, Mikko Karttunen, RA Barrio, Kimmo Kaski
    posted to turing by softsimu on 2008-01-21 20:18:56 as **
  • Control of Calcium Oxalate Crystal Growth by Face-Specific Adsorption of an Osteopontin Phosphopeptide
    J. Am. Chem. Soc., Vol. 129, No. 48. (5 December 2007), pp. 14946-14951.
    by B Grohe, J O'Young, DA Ionescu, G Lajoie, KA Rogers, M Karttunen, HA Goldberg, GK Hunter
    posted to mineralization osteopontin by softsimu on 2008-01-21 18:44:48 as **
  • Glycolipid Membranes through Atomistic Simulations: Effect of Glucose and Galactose Head Groups on Lipid Bilayer Properties
    J. Phys. Chem. B, Vol. 111, No. 34. (30 August 2007), pp. 10146-10154.
    by T Rog, I Vattulainen, A Bunker, M Karttunen
    posted to force-field glycolipids membranes by softsimu on 2008-01-21 18:44:23 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Stearic Acid Spin Labels in Lipid Bilayers: Insight through Atomistic Simulations
    J. Phys. Chem. B, Vol. 111, No. 43. (1 November 2007), pp. 12447-12453.
    by L Stimson, Lei Dong, M Karttunen, A Wisniewska, M Dutka, T Rog
    posted to membranes spin-labels by softsimu on 2008-01-21 18:44:05 as **
  • Nucleation, Growth, and Scaling in Slow Combustion
    Journal of Statistical Physics, Vol. 90, No. 5. (1 March 1998), pp. 1401-1411.
    by Mikko Karttunen, Nikolas Provatas, Tapio Ala-Nissila, Martin Grant
    posted to combustion forest-fire kpz nucleation scaling by softsimu on 2008-01-21 18:38:32 as **
  • Integration schemes for dissipative particle dynamics simulations: From softly interacting systems towards hybrid models
    The Journal of Chemical Physics, Vol. 116, No. 10. (2002), pp. 3967-3979.
    by I Vattulainen, M Karttunen, G Besold, JM Polson
    posted to dpd integrators by softsimu on 2008-01-21 18:30:44 as **
  • Turing systems as models of complex pattern formation
    Brazilian Journal of Physics, Vol. 34, pp. 368-372.
    by Teemu Leppänen, Mikko Karttunen, RA Barrio, Kimmo Kaski
    posted to turing by softsimu on 2008-01-21 18:26:53 as **
  • Towards better integrators for dissipative particle dynamics simulations
    Physical Review E, Vol. 62, No. 6. (December 2000), R7611.
    by Gerhard Besold, Ilpo Vattulainen, Mikko Karttunen, James M Polson
    posted to dpd integrators by softsimu on 2008-01-21 18:12:02 as ** along with 1 person pawelp
  • Defects, Order, and Hysteresis in Driven Charge-Density Waves
    Physical Review Letters, Vol. 83, No. 17. (25 October 1999), 3518.
    by Mikko Karttunen, Mikko Haataja, KR Elder, Martin Grant
    posted to cdw charge-density-wave by softsimu on 2008-01-21 18:11:48 as **
  • Instabilities and resistance fluctuations in thin accelerated superconducting rings
    Physical Review E, Vol. 66, No. 2. (2002), 026115.
    by Mikko Karttunen, KR Elder, Martin B Tarlie, Martin Grant
    posted to instabilities superconductivity by softsimu on 2008-01-21 18:11:21 as **
  • A new dimension to Turing patterns
    Physica D: Nonlinear Phenomena, Vol. 168-169 (1 August 2002), pp. 35-44.
    by Teemu Leppanen, Mikko Karttunen, Kimmo Kaski, Rafael A Barrio, Limei Zhang
    posted to pattern-formation turing by softsimu on 2008-01-21 18:11:01 as **
  • Dielectrophoresis of charged colloidal suspensions
    Physical Review E, Vol. 67, No. 2. (18 February 2003), 021403.
    by JP Huang, Mikko Karttunen, KW Yu, L Dong
    posted to dep dielectrophoresis by softsimu on 2008-01-21 18:09:45 as **
  • Collapses and explosions in self-gravitating systems
    Physical Review E, Vol. 68, No. 3. (2003), 036117.
    by I Ispolatov, M Karttunen
    posted to collapse gravitation by softsimu on 2008-01-21 18:08:28 as **
  • Electrorotation in graded colloidal suspensions
    Physical Review E, Vol. 67, No. 5. (19 May 2003), 051405.
    by JP Huang, KW Yu, GQ Gu, Mikko Karttunen
    posted to electrokinetics electrorotation by softsimu on 2008-01-21 18:08:14 as ** along with 1 person and 1 group perpetuale Kopelman_Group
  • Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study
    Biophys. J., Vol. 86, No. 6. (1 June 2004), pp. 3461-3472.
    by Andrey A Gurtovenko, Michael Patra, Mikko Karttunen, Ilpo Vattulainen
    posted to cationic dmpc dmtap by softsimu on 2008-01-21 18:07:31 as ** along with 1 person robertvacha
  • Nonlinear alternating current responses of dipolar fluids
    Physical Review E, Vol. 70, No. 1. (23 July 2004), 011403.
    by JP Huang, KW Yu, Mikko Karttunen
    posted to colloids by softsimu on 2008-01-21 18:06:45 as **
  • Anomalously slow phase transitions in self-gravitating systems
    Physical Review E, Vol. 70, No. 2. (2004), 026102.
    by I Ispolatov, M Karttunen
    posted to collapse grvitation by softsimu on 2008-01-21 18:06:27 as **
  • Electrokinetic behavior of two touching inhomogeneous biological cells and colloidal particles: Effects of multipolar interactions
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 69, No. 5. (2004)
    by JP Huang, Mikko Karttunen, KW Yu, L Dong, GQ Gu
    posted to dep dielectrophoresis electrokinetics electrorotation by softsimu on 2008-01-21 18:05:50 as ** along with 1 person and 1 group perpetuale Kopelman_Group
  • Coarse-grained model for phospholipid/cholesterol bilayer
    The Journal of Chemical Physics, Vol. 121, No. 18. (2004), pp. 9156-9165.
    by Teemu Murtola, Emma Falck, Michael Patra, Mikko Karttunen, Ilpo Vattulainen
    posted to cholesterol coarse-graining phospholipid by softsimu on 2008-01-21 18:05:17 as **
  • Lessons of Slicing Membranes: Interplay of Packing, Free Area, and Lateral Diffusion in Phospholipid/Cholesterol Bilayers
    Biophys. J., Vol. 87, No. 2. (1 August 2004), pp. 1076-1091.
    by Emma Falck, Michael Patra, Mikko Karttunen, Marja T Hyvonen, Ilpo Vattulainen
    posted to cholesterol diffusion membranes by softsimu on 2008-01-21 18:04:39 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Impact of cholesterol on voids in phospholipid membranes
    The Journal of Chemical Physics, Vol. 121, No. 24. (2004), pp. 12676-12689.
    by Emma Falck, Michael Patra, Mikko Karttunen, Marja T Hyvönen, Ilpo Vattulainen
    posted to cholesterol membranes voids by softsimu on 2008-01-21 18:04:14 as **
  • Spectral representation of the effective dielectric constant of graded composites
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 1. (2005)
    by L Dong, Mikko Karttunen, KW Yu
    posted to colloids composites by softsimu on 2008-01-21 18:03:49 as **
  • Response to Comment by Almeida et al.: Free Area Theories for Lipid Bilayers--Predictive or Not?
    Biophys. J., Vol. 89, No. 1. (1 July 2005), pp. 745-752.
    by Emma Falck, Michael Patra, Mikko Karttunen, Marja T Hyvonen, Ilpo Vattulainen
    posted to cholesterol diffusion dmpc sterols by softsimu on 2008-01-21 18:03:21 as ** along with 1 person paulschlesinger
  • Reply to “Comment on the use of the method of images for calculating electromagnetic responses of interacting spheres”
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 2. (2005)
    by JP Huang, KW Yu, GQ Gu, M Karttunen, L Dong
    posted to colloids by softsimu on 2008-01-21 18:02:45 as **
  • Dielectrophoresis of nanocolloids: A molecular dynamics study
    The European Physical Journal E - Soft Matter, Vol. 18, No. 2. (4 October 2005), pp. 133-142.
    by E Salonen, E Terama, I Vattulainen, M Karttunen
    posted to dep dielectrophoresis electrokinetics by softsimu on 2008-01-21 18:02:27 as **
  • Under the Influence of Alcohol: The Effect of Ethanol and Methanol on Lipid Bilayers
    Biophys. J., Vol. 90, No. 4. (15 February 2006), pp. 1121-1135.
    by Michael Patra, Emppu Salonen, Emma Terama, Ilpo Vattulainen, Roland Faller, Bryan W Lee, Juha Holopainen, Mikko Karttunen
    posted to alcohol ethanol membranes methanol by softsimu on 2008-01-21 18:01:29 as **
  • Molecular dynamics study of charged dendrimers in salt-free solution: Effect of counterions
    The Journal of Chemical Physics, Vol. 124, No. 9. (2006)
    by Andrey A Gurtovenko, Sergey V Lyulin, Mikko Karttunen, Ilpo Vattulainen
    posted to dendrimers by softsimu on 2008-01-21 18:01:10 as ** along with 1 person robertvacha
  • Interaction of Fusidic Acid with Lipid Membranes: Implications to the Mechanism of Antibiotic Activity
    Biophys. J., Vol. 91, No. 5. (1 September 2006), pp. 1787-1799.
    by Emma Falck, Jari T Hautala, Mikko Karttunen, Paavo K Kinnunen, Michael Patra, Heikki Saaren-Seppala, Ilpo Vattulainen, Susanne K Wiedmer, Juha M Holopainen
    posted to antibiotics fusidine by softsimu on 2008-01-21 18:00:01 as **
  • Dynamics of water at membrane surfaces: Effect of headgroup structure
    Biointerphases, Vol. 1, No. 3. (2006), pp. 98-105.
    by Krzysztof Murzyn, Wei Zhao, Mikko Karttunen, Marcin Kurdziel, Tomasz Róg
    posted to membranes water by softsimu on 2008-01-21 17:59:23 as **
  • Tilt: Major Factor in Sterols' Ordering Capability in Membranes
    J. Phys. Chem. B, Vol. 110, No. 51. (28 December 2006), pp. 25562-25564.
    by J Aittoniemi, T Rog, P Niemela, M Pasenkiewicz-Gierula, M Karttunen, I Vattulainen
    posted to cholesterol desmosterol ketosterol rafts sterols by softsimu on 2008-01-21 17:58:37 as **
  • Atomic-Scale Structure and Electrostatics of Anionic Palmitoyloleoylphosphatidylglycerol Lipid Bilayers with Na+ Counterions
    Biophys. J., Vol. 92, No. 4. (15 February 2007), pp. 1114-1124.
    by Wei Zhao, Tomasz Rog, Andrey A Gurtovenko, Ilpo Vattulainen, Mikko Karttunen
    posted to anionic by softsimu on 2008-01-21 17:56:02 as ** along with 1 person robertvacha
  • Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions.
    Biophys J, Vol. 84, No. 6. (June 2003), pp. 3636-3645.
    by M Patra, M Karttunen, MT Hyvönen, E Falck, P Lindqvist, I Vattulainen
    posted to electrostatics ewald-summation membranes by softsimu on 2008-01-21 17:45:28 as ** along with 2 people dimka easybakemuffin
  • Lipid Bilayers Driven to a Wrong Lane in Molecular Dynamics Simulations by Subtle Changes in Long-Range Electrostatic Interactions
    J. Phys. Chem. B, Vol. 108, No. 14. (8 April 2004), pp. 4485-4494.
    by M Patra, M Karttunen, MT Hyvonen, E Falck, I Vattulainen
    posted to electrostatics ewald-summation membranes by softsimu on 2008-01-21 17:44:40 as ** along with 1 person dimka
  • Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: diffusion, free energy of hydration, and structural properties.
    J Comput Chem, Vol. 25, No. 5. (15 April 2004), pp. 678-689.
    by M Patra, M Karttunen
    posted to ions by softsimu on 2008-01-21 17:40:45 as ** along with 1 person lillekatt
  • Effect of Monovalent Salt on Cationic Lipid Membranes As Revealed by Molecular Dynamics Simulations
    J. Phys. Chem. B, Vol. 109, No. 44. (10 November 2005), pp. 21126-21134.
    by AA Gurtovenko, M Miettinen, M Karttunen, I Vattulainen
    posted to cationic-lipids by softsimu on 2008-01-21 17:40:19 as ** along with 1 person robertvacha
  • Stability of charge inversion, Thomson problem, and application to electrophoresis
    Physical Review E, Vol. 67, No. 3. (20 March 2003), 031402.
    by Michael Patra, Marco Patriarca, Mikko Karttunen
    posted to colloids by softsimu on 2008-01-21 01:11:26 as **
  • Crumpling of a Stiff Tethered Membrane
    Physical Review Letters, Vol. 93, No. 24. (December 2004), 244301.
    by JA Åström, J Timonen, Mikko Karttunen
    posted to crumpling by softsimu on 2008-01-21 01:10:42 as **
  • Lateral Diffusion in Lipid Membranes through Collective Flows
    J. Am. Chem. Soc., Vol. 130, No. 1. (9 January 2008), pp. 44-45.
    by E Falck, T Rog, M Karttunen, I Vattulainen
    posted to diffusion lipids membranes by softsimu on 2008-01-18 21:39:25 as ** along with 3 people and 1 group ARobson sobolevnrm paulschlesinger baker-group
  • Significance of sterol structural specificity: Desmosterol cannot replace cholesterol in lipid rafts.
    J Biol Chem (25 October 2005)
    by Saara Vainio, Maurice Jansen, Mirkka Koivusalo, Tomasz Róg, Mikko Karttunen, Ilpo Vattulainen, Elina Ikonen
    posted to cholesterol desmosterol rafts by softsimu on 2008-01-13 22:49:12 as ** along with 1 person Terkko
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