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sobolevnrms Lee [81 articles]

Recent papers posted to sobolevnrms library by the author Lee. You can also see everyones Lee.
  • Linear-scaling semiempirical quantum calculations for macromolecules
    The Journal of Chemical Physics, Vol. 105, No. 7. (1996), pp. 2744-2750.
    by Tai S Lee, Darrin M York, Weitao Yang
    posted to solvation quantum_mechanics by sobolevnrm on 2008-06-30 12:13:03 as read along with 1 group baker-group
  • Solvent Structure and Hammerhead Ribozyme Catalysis
    Chemistry & Biology, Vol. 15, No. 4. (21 April 2008), pp. 332-342.
    by Monika Martick, Tai-Sung Lee, Darrin M York, William G Scott
    posted to solvation nucleic_acids by sobolevnrm on 2008-05-27 11:19:49 as read along with 1 group baker-group
  • Role of Hydrogen Bonding and Helix−Lipid Interactions in Transmembrane Helix Association
    J. Am. Chem. Soc., Vol. 130, No. 20. (21 May 2008), pp. 6456-6462.
    by Jinhyuk Lee, Wonpil Im
    posted to protein-membrane_interactions molecular_dynamics biomembranes by sobolevnrm on 2008-05-22 12:06:08 as read along with 1 group baker-group
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins (in press)
    by BC Lee, K Park, D Kim
    posted to correlated_mutations bioinformatics by sobolevnrm on 2008-05-15 11:44:28 as read along with 1 group baker-group
  • Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5087-5092.
    by Ming-Tao Lee, Wei-Chin Hung, Fang-Yu Chen, Huey W Huang
    posted to protein-membrane_interactions biomembranes by sobolevnrm on 2008-05-08 11:15:23 as read along with 1 person and 1 group paulschlesinger baker-group
  • Silver Nanoparticle-Oligonucleotide Conjugates Based on DNA with Triple Cyclic Disulfide Moieties
    Nano Lett., Vol. 7, No. 7. (11 July 2007), pp. 2112-2115.
    by JS Lee, AKR Lytton-Jean, SJ Hurst, CA Mirkin
    posted to nanotech imaging ccne by sobolevnrm on 2008-05-07 11:16:30 as read along with 1 person and 1 group ml115 baker-group
  • Multiplexed Detection of Protein Cancer Markers with Biobarcoded Nanoparticle Probes
    J. Am. Chem. Soc., Vol. 128, No. 26. (5 July 2006), pp. 8378-8379.
    by SI Stoeva, JS Lee, JE Smith, ST Rosen, CA Mirkin
    posted to nanotech ccne cancer by sobolevnrm on 2008-05-07 11:12:29 as read along with 1 person and 1 group ml115 baker-group
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Byung-Chul Lee, Keunwan Park, Dongsup Kim
    posted to bioinformatics correlated_mutations by sobolevnrm on 2008-03-11 11:40:30 as read along with 7 people and 2 groups wilbur friendpine barry neils mingzhi penpen926 scienbox structural_bioinformatics baker-group
  • microPET-Based Biodistribution of Quantum Dots in Living Mice
    J Nucl Med, Vol. 48, No. 9. (1 September 2007), pp. 1511-1518.
    by Meike L Schipper, Zhen Cheng, Sheen-Woo Lee, Laurent A Bentolila, Gopal Iyer, Jianghong Rao, Xiaoyuan Chen, Anna M Wu, Shimon Weiss, Sanjiv S Gambhir
    posted to ccne imaging nanotech by sobolevnrm on 2008-03-06 12:23:41 as read along with 1 person and 1 group ml115 baker-group
  • Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects
    Biophys. J. (25 January 2008), biophysj.107.116335.
    by Sun-Joo Lee, Yuhua Song, Nathan A Baker
    posted to biomembranes electrostatics solvation by sobolevnrm on 2008-03-03 12:21:23 as read along with 1 person and 1 group paulschlesinger baker-group
  • Kinetics of diffusion-influenced bimolecular reactions in solution. I. General formalism and relaxation kinetics of fast reversible reactions
    The Journal of Chemical Physics, Vol. 86, No. 4. (1987), pp. 1883-1903.
    by Sangyoub Lee, Martin Karplus
    posted to kinetics statistical_mechanics by sobolevnrm on 2008-02-18 12:46:35 as read along with 1 group baker-group
  • Transmembrane Helix Tilting: Insights from Calculating the Potential of Mean Force
    Physical Review Letters, Vol. 100, No. 1. (2008)
    by Jinhyuk Lee, Wonpil Im
    posted to biomembranes molecular_dynamics protein-membrane_interactions by sobolevnrm on 2008-02-13 12:45:29 as read along with 1 group baker-group
  • Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps
    Proceedings of the National Academy of Sciences, Vol. 102, No. 21. (24 May 2005), pp. 7426-7431.
    by RR Coifman, S Lafon, AB Lee, M Maggioni, B Nadler, F Warner, SW Zucker
    posted to bioinformatics clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2008-02-01 15:54:48 as read along with 1 person and 1 group kb baker-group
  • Calculation of Free Energy Barriers to the Fusion of Small Vesicles
    Biophys. J. (16 November 2007), biophysj.107.119511.
    by Jae Y Lee, Michael Schick
    posted to biomembranes by sobolevnrm on 2008-01-10 12:50:07 as read along with 1 person and 1 group paulschlesinger baker-group
  • Molecular Recognition by Cholesterol Esterase of Active Site Ligands: Structure-Reactivity Effects for Inhibition by Aryl Carbamates and Subsequent Carbamylenzyme Turnover
    Biochemistry, Vol. 35, No. 51. (24 December 1996), pp. 16723-16734.
    by SR Feaster, K Lee, N Baker, DY Hui, DM Quinn
    posted to drug_design kinetics oxysterols by sobolevnrm on 2007-10-16 12:36:38 as read along with 1 group baker-group
  • Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Andrew W Stumpff-Kane, Katarzyna Maksimiak, Michael S Lee, Michael Feig
    posted to multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-09-24 13:17:24 as read along with 1 person and 2 groups barry structural_bioinformatics baker-group
  • Dependence of the energies of fusion on the intermembrane separation: Optimal and constrained
    Journal of Chemical Physics, Vol. 127 (2007)
    by JY Lee, M Schick
    posted to biomembranes by sobolevnrm on 2007-08-20 12:49:46 as read along with 1 group baker-group
  • Structure and interactions of biological helices
    Reviews of Modern Physics, Vol. 79 (2007)
    by AA Kornyshev, DJ Lee, S Leikin, A Wynveen
    posted to electrostatics nucleic_acids statistical_mechanics by sobolevnrm on 2007-08-07 13:29:23 as read along with 1 group baker-group
  • Metabolic Engineering
    Annual Review of Biomedical Engineering, Vol. 1 (1999), pp. 535-57.
    by M Koffas, C Roberge, K Lee, G Stephanopoulos
    posted to systems_biology by sobolevnrm on 2007-07-11 13:28:13 as read along with 1 group baker-group
  • Nature's guide for mentors
    Nature, Vol. 447, No. 7146. (2007), pp. 791-7.
    by A Lee, C Dennis, P Campbell
    posted to career by sobolevnrm on 2007-06-19 13:29:29 as read along with 1 group baker-group
  • Freezing Transition of Interfacial Water at Room Temperature under Electric Fields
    Physical Review Letters, Vol. 95 (2005)
    by EM Choi, YH Yoon, S Lee, H Kang
    posted to solvation by sobolevnrm on 2007-05-28 14:53:20 as read along with 1 group baker-group
  • Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
    Physical Review B, Vol. 37, No. 2. (1988), pp. 785-9.
    by C Lee, W Yang, RG Parr
    posted to quantum_mechanics by sobolevnrm on 2007-05-25 14:38:05 as read along with 1 group baker-group
  • The Condensing Effect of Cholesterol in Lipid Bilayers
    Biophysical Journal, Vol. 92, No. 11. (2007), pp. 3960-7.
    by WC Hung, MT Lee, FY Chen, HW Huang
    posted to biomembranes by sobolevnrm on 2007-05-25 14:38:05 as read along with 1 group baker-group
  • Field Theoretic Study of Bilayer Membrane Fusion III: Membranes with Leaves of Different Composition
    Biophysical Journal, Vol. 92, No. 11. (2007), pp. 3938-48.
    by JY Lee, M Schick
    posted to biomembranes by sobolevnrm on 2007-05-25 14:38:05 as read along with 1 group baker-group
  • Ontology development for biological systems: immunology
    Bioinformatics, Vol. 23, No. 7. (2007), pp. 913-5.
    by AD Diehl, JA Lee, RH Scheuermann, JA Blake
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:37:08 as read along with 1 group baker-group
  • Structural and dielectric properties of dipolar hard sphere mixtures
    Journal of Chemical Physics, Vol. 87, No. 7. (1987), pp. 4093-9.
    by PH Lee, BM Ladanyi
    posted to solvation statistical_mechanics by sobolevnrm on 2007-05-25 14:36:29 as read along with 1 group baker-group
  • Insight into the Role of Mg2+ in Hammerhead Ribozyme Catalysis from X-ray Crystallography and Molecular Dynamics Simulation
    Journal of Chemical Theory and Computation (in press)
    by TS Lee, Silva C Lã³pez, M Martick, WG Scott, DM York
    posted to electrostatics nucleic_acids by sobolevnrm on 2007-05-25 14:36:29 as read along with 1 group baker-group
  • UvrD Helicase Unwinds DNA One Base Pair at a Time by a Two-Part Power Stroke
    Cell, Vol. 127, No. 7. (2006), pp. 1349-60.
    by JY Lee, W Yang
    posted to helicase by sobolevnrm on 2007-05-25 14:36:04 as read along with 1 group baker-group
  • Efficient Evaluation of Nonlocal Pseudopotentials via Euler Exponential Spline Interpolation
    ChemPhysChem, Vol. 6, No. 9. (2005), pp. 1827-35.
    by HS Lee, ME Tuckerman, GJ Martyna
    posted to quantum_mechanics by sobolevnrm on 2007-05-25 14:36:04 as read along with 1 group baker-group
  • Structure of liquid water at ambient temperature from ab initio molecular dynamics performed in the complete basis set limit
    Journal of Chemical Physics, Vol. 125 (2006)
    by HS Lee, ME Tuckerman
    posted to quantum_mechanics solvation by sobolevnrm on 2007-05-25 14:36:04 as read along with 1 group baker-group
  • Ab Initio Molecular Dynamics with Discrete Variable Representation Basis Sets: Techniques and Application to Liquid Water
    Journal of Physical Chemistry A, Vol. 110, No. 16. (2006), pp. 5549-60.
    by HS Lee, ME Tuckerman
    posted to quantum_mechanics solvation by sobolevnrm on 2007-05-25 14:36:04 as read along with 1 group baker-group
  • Molecular mechanisms of cellular mechanics
    Physical Chemistry Chemical Physics, Vol. 8 (2006), pp. 2692-706.
    by M Gao, M Sotomayor, E Villa, EH Lee, K Schulten
    posted to cellular_mechanics multiscale by sobolevnrm on 2007-05-25 14:23:18 as read along with 1 group baker-group
  • Chemical shifts in proteins: a shielding trajectory analysis of the fluorine nuclear magnetic resonance spectrum of the Escherichia coli galactose binding protein using a multipole shielding polarizability-local reaction field-molecular dynamics approach
    Journal of the American Chemical Society, Vol. 115, No. 15. (1993), pp. 6851-62.
    by JG Pearson, E Oldfield, FS Lee, A Warshel
    posted to electrostatics nmr by sobolevnrm on 2007-05-25 14:23:17 as read along with 1 group baker-group
  • Dynamic Coupling and Allosteric Behavior in a Nonallosteric Protein
    Biochemistry, Vol. 45, No. 25. (2006), pp. 7693-9.
    by MW Clarkson, SA Gilmore, MH Edgell, AL Lee
    posted to allostery by sobolevnrm on 2007-05-25 14:23:16 as read along with 1 group baker-group
  • Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 18. (2006), pp. 6835-40.
    by ES Radisky, JM Lee, CJK Lu, Jr
    posted to thrombin by sobolevnrm on 2007-05-25 14:22:46 as read along with 1 group baker-group
  • Does Urea Denature Hydrophobic Interactions?
    Journal of the American Chemical Society, Vol. 128, No. 15. (2006), pp. 4948-9.
    by ME Lee, NFA van der Vegt
    posted to solvation by sobolevnrm on 2007-05-25 14:22:45 as read along with 1 group baker-group
  • A smooth particle mesh Ewald method
    Journal of Chemical Physics, Vol. 103, No. 19. (1995), pp. 8577-93.
    by U Essmann, L Perera, ML Berkowitz, T Darden, H Lee, LG Pedersen
    posted to electrostatics molecular_dynamics by sobolevnrm on 2007-05-25 14:19:54 as read along with 1 group baker-group
  • Under the Influence of Alcohol: The Effect of Ethanol and Methanol on Lipid Bilayers
    Biophysical Journal, Vol. 90, No. 4. (2006), pp. 1121-35.
    by M Patra, E Salonen, E Terama, I Vattulainen, R Faller, BW Lee, J Holopainen, M Karttunen
    posted to biomembranes by sobolevnrm on 2007-05-25 14:19:28 as read along with 1 group baker-group
  • Surface-tension-driven microactuation based on continuous electrowetting
    Journal of Microelectromechanical Systems, Vol. 9, No. 2. (2000), pp. 171-80.
    by J Lee, CJ Kim
    posted to biomembranes electrostatics nanotech by sobolevnrm on 2007-05-25 14:19:04 as read along with 1 group baker-group
  • Effective Charges of Polyelectrolytes in a Salt-Free Solution Based on Counterion Chemical Potential
    Journal of Physical Chemistry B, Vol. 109, No. 47. (2005), pp. 22560-9.
    by TY Wang, TR Lee, YJ Sheng, HK Tsao
    posted to electrostatics nucleic_acids by sobolevnrm on 2007-05-25 14:19:04 as read along with 1 group baker-group
  • Principal pathway coupling agonist binding to channel gating in nicotinic receptors
    Nature, Vol. 438, No. 7065. (2005), pp. 243-7.
    by WY Lee, SM Sine
    posted to acetylcholinesterase allostery neuromuscular_junctions by sobolevnrm on 2007-05-25 14:19:04 as read along with 1 group baker-group
  • Electromechanical effects on tether formation from lipid membranes: A theoretical analysis
    Physical Review E, Vol. 72 (2005)
    by E Glassinger, AC Lee, RM Raphael
    posted to biomembranes by sobolevnrm on 2007-05-25 14:19:04 as read along with 1 group baker-group
  • Effects of hydrophobic mismatch and spontaneous curvature on ion channel gating with a hinge
    Physical Review E, Vol. 72 (2005)
    by KJB Lee
    posted to biomembranes by sobolevnrm on 2007-05-25 14:19:02 as read along with 1 group baker-group
  • Simulation of Ion Conduction in the ompF Porin Channel Using BioMOCA
    Journal of Computational Electronics, Vol. 4, No. 1-2. (2005), pp. 157-60.
    by KI Lee, YJ Park, T van der Straaten, G Kathawala, U Ravaioli
    posted to diffusion electrostatics by sobolevnrm on 2007-05-25 14:18:44 as read along with 1 group baker-group
  • Evolutionary information for specifying a protein fold
    Nature, Vol. 437, No. 7058. (2005), pp. 512-8.
    by M Socolich, SW Lockless, WP Russ, H Lee, KH Gardner, R Ranganathan
    posted to correlated_mutations protein_folding by sobolevnrm on 2007-05-25 14:18:43 as read along with 1 group baker-group
  • How lipids and proteins interact in a membrane: a molecular approach
    Molecular BioSystems, Vol. 1, No. 3. (2005), pp. 203-12.
    by AG Lee
    posted to biomembranes by sobolevnrm on 2007-05-25 14:18:43 as read along with 1 group baker-group
  • Comparison between Generalized-Born and PoissonâBoltzmann methods in physics-based scoring functions for protein structure prediction
    Journal of Molecular Modeling, Vol. 12, No. 1. (2005), pp. 101-10.
    by MC Lee, R Yang, Y Duan
    posted to electrostatics by sobolevnrm on 2007-05-25 14:18:25 as read along with 1 group baker-group
  • Novel generalized Born methods
    Journal of Chemical Physics, Vol. 116, No. 24. (2002), pp. 10606-14.
    by MS Lee, Jr, Iii
    posted to electrostatics solvation by sobolevnrm on 2007-05-25 14:18:24 as read along with 1 group baker-group
  • New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations
    Journal of Computational Chemistry, Vol. 24, No. 11. (2003), pp. 1348-56.
    by MS Lee, M Feig, Jr, Iii
    posted to electrostatics solvation by sobolevnrm on 2007-05-25 14:18:24 as read along with 1 group baker-group
  • WIGGLE: A new constrained molecular dynamics algorithm in Cartesian coordina
    Journal of Computational Physics, Vol. 210, No. 1. (2005), pp. 171-82.
    by SH Lee, K Palmo, S Krimm
    posted to molecular_dynamics multiscale by sobolevnrm on 2007-05-25 14:18:24 as read along with 1 group baker-group
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