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ruvidos ppi [44 articles]

Neue Publikationen in ruvidos Bibliothek eingetragen unter dem Bezeichner: ppi. You can also see everyone's ppi.
  • KEGG: kyoto encyclopedia of genes and genomes.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 27-30.
    by M Kanehisa, S Goto
    posted to chapter database ppi by ruvido on 2008-04-10 15:32:02 as ** along with 11 people jerome_ucsf_slb natstreet grottenolm Evangelia dquest j3xucite fisherp koerner noby naegele katerinakal
  • BIND--The Biomolecular Interaction Network Database.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 242-245.
    by GD Bader, I Donaldson, C Wolting, BF Ouellette, T Pawson, CW Hogue
    posted to chapter database ppi by ruvido on 2008-04-10 15:30:32 as ** along with 4 people satre carlk wnpx blackbart
  • From words to literature in structural proteomics.
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225.
    by A Sali, R Glaeser, T Earnest, W Baumeister
    posted to chapter ppi review by ruvido on 2008-04-10 15:12:55 as ** along with 5 people higueruelo bicko chad_davis dgront lpfernandes
  • Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 A Resolution
    Cell, Vol. 98, No. 6. (17 September 1999), pp. 811-824.
    by Gongyi Zhang, Elizabeth A Campbell, Leonid Minakhin, Catherine Richter, Konstantin Severinov, Seth A Darst
    posted to chapter ppi xray by ruvido on 2008-04-09 18:05:15 as **
  • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
    Science, Vol. 289, No. 5481. (11 August 2000), pp. 905-920.
    by N Ban, P Nissen, J Hansen, PB Moore, TA Steitz
    posted to chapter ppi xray by ruvido on 2008-04-09 18:03:20 as ** along with 2 people P2324548 eckart_bindewald
  • Identification of protein-protein interfaces by decreased amide proton solvent accessibility.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14705-14710.
    by JG Mandell, AM Falick, EA Komives
    posted to chapter nmr ppi by ruvido on 2008-04-09 18:00:44 as **
  • Filtering and selection of structural models: combining docking and NMR.
    Proteins, Vol. 53, No. 1. (1 October 2003), pp. 18-32.
    by A Dobrodumov, AM Gronenborn
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:57:44 as **
  • Identification of the protein kinase A regulatory RIalpha-catalytic subunit interface by amide H/2H exchange and protein docking.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13264-13269.
    by GS Anand, D Law, JG Mandell, AN Snead, I Tsigelny, SS Taylor, LF Ten Eyck, EA Komives
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:55:03 as **
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
    posted to chapter homology ppi by ruvido on 2008-04-09 17:31:01 as ** along with 9 people and 2 groups higueruelo baaden jwm bicko chad_davis dullhunk dgront drastic Evangelia Radiation_Damage Stressosome
  • High-resolution protein-protein docking
    Current Opinion in Structural Biology, Vol. 16, No. 2. (April 2006), pp. 183-193.
    by Jeffrey J Gray
    posted to chapter docking ppi by ruvido on 2008-04-09 16:00:27 as ** along with 6 people higueruelo aqeel jwm ima bluvsh1 cjeans
  • A model of large-scale proteome evolution
    Advances in Complex Systems, Vol. 5, No. 1. (2002), pp. 43-54.
    by RV Sole, Pastor R Satorras, E Smith, TB Kepler
    posted to chapter ppi by ruvido on 2008-04-08 16:25:27 as **
  • Preferential attachment in the protein network evolution.
    Phys Rev Lett, Vol. 91, No. 13. (26 September 2003)
    by E Eisenberg, EY Levanon
    posted to chapter ppi by ruvido on 2008-04-08 16:22:53 as ** along with 3 people dragonrez gurkanbebek cjeans
  • Modeling of Protein Interaction Networks
    ComPlexUs, Vol. 1 (2003), pp. 38-44.
    by A Vázquez, A Flammini, A Maritan, A Vespignani
    posted to chapter ppi by ruvido on 2008-04-08 16:21:31 as **
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to chapter ppi by ruvido on 2008-04-08 15:52:41 as ** along with 11 people and 3 groups iris_2001 kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre gcalda grahamc lpfernandes Evangelia EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to chapter ppi by ruvido on 2008-04-07 17:29:32 as ** along with 14 people and 2 groups carlk csanford adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg gcalda lpfernandes shikin hplatero kdl Bioinformatics
  • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627.
    by Peter Uetz, Loic Giot, Gerard Cagney, Traci A Mansfield, Richard S Judson, James R Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M Rothberg
    posted to chapter ppi by ruvido on 2008-04-07 17:28:41 as ** along with 14 people and 1 group carlk csanford dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre gcalda grahamc laughcry hplatero kdl
  • Potential artefacts in protein-interaction networks.
    FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-07 17:23:28 as ** along with 3 people chad_davis wnpx gurkanbebek
  • Protein interactions: two methods for assessment of the reliability of high throughput observations.
    Mol Cell Proteomics, Vol. 1, No. 5. (May 2002), pp. 349-356.
    by CM Deane, Ł Salwiński, I Xenarios, D Eisenberg
    posted to chapter ppi by ruvido on 2008-04-07 17:21:57 as ** along with 10 people and 1 group chasmand ras tmmurali lfriedl bluto henschel iris_2001 shikin cdeane Pao-Yang kdl
  • Solvation energy in protein folding and binding.
    Nature, Vol. 319, No. 6050. (2 1986), pp. 199-203.
    by D Eisenberg, AD McLachlan
    posted to chapter ppi solvation by ruvido on 2008-04-07 16:42:52 as ** along with 1 person ashaytan
  • Prediction of protein-protein interactions by docking methods
    Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 28-35.
    by Graham R Smith, Michael J Sternberg
    posted to chapter docking ppi by ruvido on 2008-04-07 09:58:31 as ** along with 1 person cjeans
  • Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 242-249.
    by SJ Wodak, R Méndez
    posted to capri chapter ppi by ruvido on 2008-04-07 09:56:44 as ** along with 3 people nachtalp chad_davis ffranca
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to capri chapter ppi by ruvido on 2008-04-07 09:54:54 as ** along with 7 people timg bicko chad_davis cjeans carlescorbi yalexeev middledomain
  • HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
    J Am Chem Soc, Vol. 125, No. 7. (19 February 2003), pp. 1731-1737.
    by C Dominguez, R Boelens, AM Bonvin
    posted to chapter ppi by ruvido on 2008-04-07 09:48:17 as ** along with 6 people betainverse dgruiz bicko bluvsh1 gloria yalexeev
  • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154.
    by L Lu, AK Arakaki, H Lu, J Skolnick
    posted to chapter ppi by ruvido on 2008-04-04 17:05:33 as ** along with 4 people and 1 group mdimmic lfriedl chad_davis cjeans kdl
  • MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
    Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364.
    by L Lu, H Lu, J Skolnick
    posted to chapter ppi by ruvido on 2008-04-04 17:05:03 as ** along with 5 people and 5 groups ana bicko chad_davis marcius sangeetha structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
    posted to chapter ppi by ruvido on 2008-04-04 17:01:20 as ** along with 5 people karbak bicko chad_davis drastic RebeccaHamer
  • InterPreTS: protein interaction prediction through tertiary structure.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-04 16:58:26 as ** along with 5 people baaden bicko chad_davis henschel Pao-Yang
  • Computational redesign of protein-protein interaction specificity.
    Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379.
    by T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, D Baker
    posted to chapter ppi by ruvido on 2008-04-04 16:48:51 as ** along with 6 people jteyra lna jwm bicko cjeans tale
  • Comparative protein structure modeling of genes and genomes.
    Annu Rev Biophys Biomol Struct, Vol. 29 (2000), pp. 291-325.
    by MA Marti-Renom, AC Stuart, A Fiser, R Sanchez, F Melo, A Sali
    posted to chapter ppi by ruvido on 2008-04-04 16:47:47 as ** along with 12 people and 2 groups granujilla chad_davis IrinaMoreira min013 aalibes nigham ttjoseph marcius ffranca duartemolha dgront insectopalo BioinfoCIPF SGU-CIPF
  • Computational methods for the prediction of protein interactions
    Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 368-373.
    by Alfonso Valencia, Florencio Pazos
    posted to chapter computational ppi review by ruvido on 2008-03-27 11:18:53 as ** along with 2 people IbnBio selrac
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to chapter ppi review by ruvido on 2008-03-26 17:25:09 as ** along with 11 people and 1 group higueruelo baaden bicko anita chad_davis dgront sriram_s cjeans Evangelia Pao-Yang marti structure-bii
  • Protein interaction maps for complete genomes based on gene fusion events.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 86-90.
    by AJ Enright, I Iliopoulos, NC Kyrpides, CA Ouzounis
    posted to chapter gene_fusion ppi by ruvido on 2008-03-26 16:08:46 as ** along with 4 people iris_2001 carlk balajis selrac
  • The third dimension for protein interactions and complexes
    Trends in Biochemical Sciences, Vol. 27, No. 12. (1 December 2002), pp. 633-638.
    by Patrick Aloy, Robert B Russell
    posted to chapter ppi by ruvido on 2008-03-26 16:00:31 as **
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to chapter ppi by ruvido on 2008-03-26 15:59:04 as ** along with 19 people and 6 groups carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy raiyar grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Structure-based assembly of protein complexes in yeast.
    Science, Vol. 303, No. 5666. (26 March 2004), pp. 2026-2029.
    by P Aloy, B Boettcher, H Ceulemans, C Leutwein, C Mellwig, S Fischer, AC Gavin, P Bork, G Superti-Furga, L Serrano, RB Russell
    posted to chapter ppi by ruvido on 2008-03-20 11:42:58 as ** along with 4 people chad_davis koller Evangelia mingzhi
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to chapter ppi by ruvido on 2008-03-20 10:26:08 as ** along with 23 people and 2 groups ksiek kintoki ellakat frohike carlk shikin dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
  • Predicting protein-protein interactions based only on sequences information
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4337-4341.
    by Juwen Shen, Jian Zhang, Xiaomin Luo, Weiliang Zhu, Kunqian Yu, Kaixian Chen, Yixue Li, Hualiang Jiang
    posted to chapter ppi by ruvido on 2008-03-20 10:09:38 as ** along with 5 people and 1 group phoenixzxl samjlord Dualsystems cjeans huyun110 moernerlab
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to chapter ppi by ruvido on 2008-03-20 10:05:09 as ** along with 18 people and 2 groups frohike carlk lfriedl balajis opheliav yuval wnpx nickluscombe raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
  • Prediction of physical protein–protein interactions
    Physical Biology, Vol. 2, No. 2. (June 2005), S1.
    by András Szilágyi, Vera Grimm, Adrián K Arakaki, Jeffrey Skolnick
    posted to chapter ppi prediction by ruvido on 2008-03-19 10:25:46 as ** along with 1 person and 1 group lfriedl kdl
  • A combined algorithm for genome-wide prediction of protein function.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86.
    by EM Marcotte, M Pellegrini, MJ Thompson, TO Yeates, D Eisenberg
    posted to chapter ppi by ruvido on 2008-03-19 10:06:18 as ** along with 4 people and 1 group carlk shivaram lfriedl cjeans kdl
  • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
    Science, Vol. 285, No. 5428. (30 July 1999), pp. 751-753.
    by Edward M Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W Rice, Todd O Yeates, David Eisenberg
    posted to chapter ppi by ruvido on 2008-03-19 10:05:52 as ** along with 7 people and 1 group iris_2001 lfriedl balajis opheliav gurkanbebek cjeans Evangelia kdl
  • From The Cover: A simple physical model for scaling in protein-protein interaction networks
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 311-316.
    by Eric J Deeds, Orr Ashenberg, Eugene I Shakhnovich
    posted to chapter ppi by ruvido on 2008-03-18 16:07:20 as ** along with 4 people and 1 group shuns lfriedl gcalda iris_2001 kdl
  • Interaction networks for systems biology.
    FEBS Lett (15 February 2008)
    by Samuel Bader, Sebastian Kühner, Anne-Claude C Gavin
    posted to ppi by ruvido on 2008-02-25 16:58:12 as ** along with 3 people adacier chad_davis zwang
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to chapter network ppi protein-interactions review system-biology by ruvido on 2006-12-29 12:08:39 as ** along with 19 people and 3 groups jteyra higueruelo chad_davis ana aalibes bicko xico dgront drastic choonpeng henschel massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch structural_bioinformatics Bioinformatics WetBiology
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