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ruvidos chapter [60 articles]

Neue Publikationen in ruvidos Bibliothek eingetragen unter dem Bezeichner: chapter. You can also see everyone's chapter.
  • KEGG: kyoto encyclopedia of genes and genomes.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 27-30.
    by M Kanehisa, S Goto
    posted to chapter database ppi by ruvido on 2008-04-10 15:32:02 as ** along with 10 people natstreet grottenolm Evangelia dquest j3xucite fisherp koerner noby naegele katerinakal
  • BIND--The Biomolecular Interaction Network Database.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 242-245.
    by GD Bader, I Donaldson, C Wolting, BF Ouellette, T Pawson, CW Hogue
    posted to chapter database ppi by ruvido on 2008-04-10 15:30:32 as ** along with 3 people carlk wnpx blackbart
  • From words to literature in structural proteomics.
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225.
    by A Sali, R Glaeser, T Earnest, W Baumeister
    posted to chapter ppi review by ruvido on 2008-04-10 15:12:55 as ** along with 5 people higueruelo bicko chad_davis dgront lpfernandes
  • Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 A Resolution
    Cell, Vol. 98, No. 6. (17 September 1999), pp. 811-824.
    by Gongyi Zhang, Elizabeth A Campbell, Leonid Minakhin, Catherine Richter, Konstantin Severinov, Seth A Darst
    posted to chapter ppi xray by ruvido on 2008-04-09 18:05:15 as **
  • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
    Science, Vol. 289, No. 5481. (11 August 2000), pp. 905-920.
    by N Ban, P Nissen, J Hansen, PB Moore, TA Steitz
    posted to chapter ppi xray by ruvido on 2008-04-09 18:03:20 as ** along with 2 people P2324548 eckart_bindewald
  • Identification of protein-protein interfaces by decreased amide proton solvent accessibility.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14705-14710.
    by JG Mandell, AM Falick, EA Komives
    posted to chapter nmr ppi by ruvido on 2008-04-09 18:00:44 as **
  • Filtering and selection of structural models: combining docking and NMR.
    Proteins, Vol. 53, No. 1. (1 October 2003), pp. 18-32.
    by A Dobrodumov, AM Gronenborn
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:57:44 as **
  • Identification of the protein kinase A regulatory RIalpha-catalytic subunit interface by amide H/2H exchange and protein docking.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13264-13269.
    by GS Anand, D Law, JG Mandell, AN Snead, I Tsigelny, SS Taylor, LF Ten Eyck, EA Komives
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:55:03 as **
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
    posted to chapter homology ppi by ruvido on 2008-04-09 17:31:01 as ** along with 9 people and 2 groups higueruelo baaden jwm bicko chad_davis dullhunk dgront drastic Evangelia Radiation_Damage Stressosome
  • High-resolution protein-protein docking
    Current Opinion in Structural Biology, Vol. 16, No. 2. (April 2006), pp. 183-193.
    by Jeffrey J Gray
    posted to chapter docking ppi by ruvido on 2008-04-09 16:00:27 as ** along with 6 people higueruelo aqeel jwm ima bluvsh1 cjeans
  • Computational Prediction of Protein–Protein Interactions
    Molecular Biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17.
    by Lucy Skrabanek, Harpreet Saini, Gary Bader, Anton Enright
    posted to chapter genome by ruvido on 2008-04-09 15:47:40 as ** along with 1 person jyuh
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to chapter genome by ruvido on 2008-04-09 15:29:03 as ** along with 22 people and 10 groups ellakat frohike carlk Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller nicoleq lpfernandes phoenixzxl larsjuhljensen structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • Systematic genetic analysis with ordered arrays of yeast deletion mutants.
    Science, Vol. 294, No. 5550. (14 December 2001), pp. 2364-2368.
    by AH Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, M Robinson, S Raghibizadeh, CW Hogue, H Bussey, B Andrews, M Tyers, C Boone
    posted to chapter genome by ruvido on 2008-04-09 15:24:00 as ** along with 6 people and 1 group shivaram lfriedl balajis opheliav nirfriedman blaine_5 kdl
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to chapter genome by ruvido on 2008-04-09 15:17:58 as ** along with 10 people and 1 group paolomarcatili roys BioGeek lfriedl wnpx mmt gespim bluto grahamc kintoki kdl
  • Inferring protein interactions from phylogenetic distance matrices.
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2039-2045.
    by J Gertz, G Elfond, A Shustrova, M Weisinger, M Pellegrini, S Cokus, B Rothschild
    posted to chapter genome by ruvido on 2008-04-09 14:55:50 as ** along with 3 people and 1 group lfriedl balajis wnpx kdl
  • Exploiting the co-evolution of interacting proteins to discover interaction specificity.
    J Mol Biol, Vol. 327, No. 1. (14 March 2003), pp. 273-284.
    by AK Ramani, EM Marcotte
    posted to chapter genome by ruvido on 2008-04-09 14:55:17 as ** along with 1 person balajis
  • Co-evolutionary analysis reveals insights into protein-protein interactions.
    J Mol Biol, Vol. 324, No. 1. (15 November 2002), pp. 177-192.
    by CS Goh, FE Cohen
    posted to chapter genome by ruvido on 2008-04-09 14:54:46 as ** along with 1 person bicko
  • Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.
    Proc Natl Acad Sci U S A, Vol. 96, No. 8. (13 April 1999), pp. 4285-4288.
    by M Pellegrini, EM Marcotte, MJ Thompson, D Eisenberg, TO Yeates
    posted to chapter genome by ruvido on 2008-04-09 11:44:44 as ** along with 9 people and 1 group carlk dragonrez bicko lfriedl balajis opheliav tny winterschlaefer shung kdl
  • Measuring genome evolution.
    Proc Natl Acad Sci U S A, Vol. 95, No. 11. (26 May 1998), pp. 5849-5856.
    by MA Huynen, P Bork
    posted to chapter genome by ruvido on 2008-04-09 11:42:44 as ** along with 4 people ziquje greger_halltorp operon kaarsinogen
  • Collective dynamics of 'small-world' networks.
    Nature, Vol. 393, No. 6684. (4 June 1998), pp. 440-442.
    by DJ Watts, SH Strogatz
    posted to chapter by ruvido on 2008-04-08 18:53:15 as ** along with 65 people and 12 groups jago Borelli jpbarrette takeha-e jsanpedro ladamic beete ulmer jotwin livingthingdan iris_2001 teferet camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher Rsavi zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes sbianco kb kaks stefanoallesina dbk-lab GraphVis UCD_SmallWorldGraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes 801
  • Emergence of scaling in random networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by AL Barabasi, R Albert
    posted to chapter by ruvido on 2008-04-08 17:29:59 as ** along with 20 people and 8 groups thecolourblue camster korakot ldfu KAllendoerfer aalibes ChaTo shivaram mbliemel alexg yish balicea matteodellamico yoh merazzle maqbes cerkut timflutre boila koles Philosophy_of_Information dbk-lab Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni contact-id
  • A model of large-scale proteome evolution
    Advances in Complex Systems, Vol. 5, No. 1. (2002), pp. 43-54.
    by RV Sole, Pastor R Satorras, E Smith, TB Kepler
    posted to chapter ppi by ruvido on 2008-04-08 16:25:27 as **
  • Preferential attachment in the protein network evolution.
    Phys Rev Lett, Vol. 91, No. 13. (26 September 2003)
    by E Eisenberg, EY Levanon
    posted to chapter ppi by ruvido on 2008-04-08 16:22:53 as ** along with 3 people dragonrez gurkanbebek cjeans
  • Modeling of Protein Interaction Networks
    ComPlexUs, Vol. 1 (2003), pp. 38-44.
    by A Vázquez, A Flammini, A Maritan, A Vespignani
    posted to chapter ppi by ruvido on 2008-04-08 16:21:31 as **
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to chapter ppi by ruvido on 2008-04-08 15:52:41 as ** along with 11 people and 3 groups iris_2001 kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre gcalda grahamc lpfernandes Evangelia EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to chapter ppi by ruvido on 2008-04-07 17:29:32 as ** along with 14 people and 2 groups carlk csanford adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg gcalda lpfernandes shikin hplatero kdl Bioinformatics
  • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627.
    by Peter Uetz, Loic Giot, Gerard Cagney, Traci A Mansfield, Richard S Judson, James R Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M Rothberg
    posted to chapter ppi by ruvido on 2008-04-07 17:28:41 as ** along with 14 people and 1 group carlk csanford dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre gcalda grahamc laughcry hplatero kdl
  • Scale-free networks from varying vertex intrinsic fitness.
    Phys Rev Lett, Vol. 89, No. 25. (16 December 2002)
    by G Caldarelli, A Capocci, P De Los Rios, MA Muñoz
    posted to chapter networks by ruvido on 2008-04-07 17:27:37 as ** along with 5 people and 4 groups camster korakot ChaTo pdelosri ltabourier Philosophy_of_Information dbk-lab Blog_and_Wiki_Research EPFL_SB_ITP_LBS
  • Potential artefacts in protein-interaction networks.
    FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-07 17:23:28 as ** along with 3 people chad_davis wnpx gurkanbebek
  • Protein interactions: two methods for assessment of the reliability of high throughput observations.
    Mol Cell Proteomics, Vol. 1, No. 5. (May 2002), pp. 349-356.
    by CM Deane, Ł Salwiński, I Xenarios, D Eisenberg
    posted to chapter ppi by ruvido on 2008-04-07 17:21:57 as ** along with 10 people and 1 group chasmand ras tmmurali lfriedl bluto henschel iris_2001 shikin cdeane Pao-Yang kdl
  • Solvation energy in protein folding and binding.
    Nature, Vol. 319, No. 6050. (2 1986), pp. 199-203.
    by D Eisenberg, AD McLachlan
    posted to chapter ppi solvation by ruvido on 2008-04-07 16:42:52 as ** along with 1 person ashaytan
  • Prediction of protein-protein interactions by docking methods
    Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 28-35.
    by Graham R Smith, Michael J Sternberg
    posted to chapter docking ppi by ruvido on 2008-04-07 09:58:31 as ** along with 1 person cjeans
  • Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 242-249.
    by SJ Wodak, R Méndez
    posted to capri chapter ppi by ruvido on 2008-04-07 09:56:44 as ** along with 3 people nachtalp chad_davis ffranca
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to capri chapter ppi by ruvido on 2008-04-07 09:54:54 as ** along with 6 people bicko chad_davis cjeans carlescorbi yalexeev middledomain
  • HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
    J Am Chem Soc, Vol. 125, No. 7. (19 February 2003), pp. 1731-1737.
    by C Dominguez, R Boelens, AM Bonvin
    posted to chapter ppi by ruvido on 2008-04-07 09:48:17 as ** along with 6 people betainverse dgruiz bicko bluvsh1 gloria yalexeev
  • Comparative modeling for protein structure prediction.
    Curr Opin Struct Biol (27 February 2006)
    by Krzysztof Ginalski
    posted to chapter homology_modelling by ruvido on 2008-04-04 17:16:07 as ** along with 5 people BragilMassoud kuhn rabio schuylrp insectopalo
  • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154.
    by L Lu, AK Arakaki, H Lu, J Skolnick
    posted to chapter ppi by ruvido on 2008-04-04 17:05:33 as ** along with 4 people and 1 group mdimmic lfriedl chad_davis cjeans kdl
  • MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
    Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364.
    by L Lu, H Lu, J Skolnick
    posted to chapter ppi by ruvido on 2008-04-04 17:05:03 as ** along with 5 people and 5 groups ana bicko chad_davis marcius sangeetha structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
    posted to chapter ppi by ruvido on 2008-04-04 17:01:20 as ** along with 5 people karbak bicko chad_davis drastic RebeccaHamer
  • InterPreTS: protein interaction prediction through tertiary structure.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-04 16:58:26 as ** along with 5 people baaden bicko chad_davis henschel Pao-Yang
  • Computational redesign of protein-protein interaction specificity.
    Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379.
    by T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, D Baker
    posted to chapter ppi by ruvido on 2008-04-04 16:48:51 as ** along with 5 people lna jwm bicko cjeans tale
  • Comparative protein structure modeling of genes and genomes.
    Annu Rev Biophys Biomol Struct, Vol. 29 (2000), pp. 291-325.
    by MA Marti-Renom, AC Stuart, A Fiser, R Sanchez, F Melo, A Sali
    posted to chapter ppi by ruvido on 2008-04-04 16:47:47 as ** along with 11 people and 2 groups chad_davis IrinaMoreira min013 aalibes nigham ttjoseph marcius ffranca duartemolha dgront insectopalo BioinfoCIPF SGU-CIPF
  • Computational methods for the prediction of protein interactions
    Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 368-373.
    by Alfonso Valencia, Florencio Pazos
    posted to chapter computational ppi review by ruvido on 2008-03-27 11:18:53 as ** along with 2 people IbnBio selrac
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to chapter ppi review by ruvido on 2008-03-26 17:25:09 as ** along with 11 people and 1 group higueruelo baaden bicko anita chad_davis dgront sriram_s cjeans Evangelia Pao-Yang marti structure-bii
  • Protein interaction maps for complete genomes based on gene fusion events.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 86-90.
    by AJ Enright, I Iliopoulos, NC Kyrpides, CA Ouzounis
    posted to chapter gene_fusion ppi by ruvido on 2008-03-26 16:08:46 as ** along with 3 people carlk balajis selrac
  • The third dimension for protein interactions and complexes
    Trends in Biochemical Sciences, Vol. 27, No. 12. (1 December 2002), pp. 633-638.
    by Patrick Aloy, Robert B Russell
    posted to chapter ppi by ruvido on 2008-03-26 16:00:31 as **
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to chapter ppi by ruvido on 2008-03-26 15:59:04 as ** along with 19 people and 6 groups carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy raiyar grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Structure-based assembly of protein complexes in yeast.
    Science, Vol. 303, No. 5666. (26 March 2004), pp. 2026-2029.
    by P Aloy, B Boettcher, H Ceulemans, C Leutwein, C Mellwig, S Fischer, AC Gavin, P Bork, G Superti-Furga, L Serrano, RB Russell
    posted to chapter ppi by ruvido on 2008-03-20 11:42:58 as ** along with 4 people chad_davis koller Evangelia mingzhi
  • Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models.
    BMC Evol Biol, Vol. 4 (9 September 2004)
    by GP Karev, YI Wolf, FS Berezovskaya, EV Koonin
    posted to chapter by ruvido on 2008-03-20 11:01:39 as ** along with 1 person knaseanka
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to chapter ppi by ruvido on 2008-03-20 10:26:08 as ** along with 23 people and 2 groups ksiek kintoki ellakat frohike carlk shikin dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
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