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The untiring search for the most complete proteome representation: reviewing the methods

by: Daniel M de Souza, Bruno M Oliveira, Erich Castro-Dias, Flavia V Winck, Ricardo S Horiuchi, Paulo A Baldasso, Hugo T Caetano, Natalia K Pires, Sergio Marangoni, Jose C Novello
Brief Funct Genomic Proteomic (29 May 2008), eln023.


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Proteomic research has proved valuable for understanding the molecular mechanisms of biological processes, as well as in the search for biomarkers for a variety of diseases which lack a molecular diagnostic. While several new approaches are being developed, two-dimensional (2-DE) gel electrophoresis is still one of the most commonly used techniques, despite its many limitations. However, for biomarker research, 2-DE gel electrophoresis alone does not fulfill the necessary pre-requisites. If such a technique is utilized exclusively, a great part of a given proteome remains unseen. Therefore, very precise and sensitive techniques are needed. Here, we present a brief review of known methodologies that try to overcome the limitations of conventional proteome analysis as well as their respective advantages and limitations. 10.1093/bfgp/eln023


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