KEGG Atlas mapping for global analysis of metabolic pathways

@article{citeulike:2819747, abstract = {KEGG Atlas is a new graphical interface to the KEGG suite of databases, especially to the systems information in the PATHWAY and BRITE databases. It currently consists of a single global map and an associated viewer for metabolism, covering about 120 KEGG metabolic pathway maps and about 10 BRITE hierarchies. The viewer allows the user to navigate and zoom the global map under the Ajax technology. The mapping of high-throughput experimental data onto the global map is the main use of KEGG Atlas. In the global metabolism map, the node (circle) is a chemical compound and the edge (line) is a set of reactions linked to a set of KEGG Orthology (KO) entries for enzyme genes. Once gene identifiers in different organisms are converted to the K number identifiers in the KO system, corresponding line segments can be highlighted in the global map, allowing the user to view genome sequence data as organism-specific pathways, gene expression data as up- or down-regulated pathways, etc. Once chemical compounds are converted to the C number identifiers in KEGG, metabolomics data can also be displayed in the global map. KEGG Atlas is available at http://www.genome.jp/kegg/atlas/. 10.1093/nar/gkn282}, author = {Okuda, Shujiro and Yamada, Takuji and Hamajima, Masami and Itoh, Masumi and Katayama, Toshiaki and Bork, Peer and Goto, Susumu and Kanehisa, Minoru }, citeulike-article-id = {2819747}, doi = {http://dx.doi.org/10.1093/nar/gkn282}, journal = {Nucl. Acids Res.}, keywords = {bioinformatics, kegg, pathway}, month = {May}, pages = {gkn282+}, posted-at = {2008-05-21 13:33:17}, priority = {2}, title = {KEGG Atlas mapping for global analysis of metabolic pathways}, url = {http://dx.doi.org/10.1093/nar/gkn282}, year = {2008} }

TY - JOUR ID - citeulike:2819747 L3 - citeulike-article-id:2819747 N2 - KEGG Atlas is a new graphical interface to the KEGG suite of databases, especially to the systems information in the PATHWAY and BRITE databases. It currently consists of a single global map and an associated viewer for metabolism, covering about 120 KEGG metabolic pathway maps and about 10 BRITE hierarchies. The viewer allows the user to navigate and zoom the global map under the Ajax technology. The mapping of high-throughput experimental data onto the global map is the main use of KEGG Atlas. In the global metabolism map, the node (circle) is a chemical compound and the edge (line) is a set of reactions linked to a set of KEGG Orthology (KO) entries for enzyme genes. Once gene identifiers in different organisms are converted to the K number identifiers in the KO system, corresponding line segments can be highlighted in the global map, allowing the user to view genome sequence data as organism-specific pathways, gene expression data as up- or down-regulated pathways, etc. Once chemical compounds are converted to the C number identifiers in KEGG, metabolomics data can also be displayed in the global map. KEGG Atlas is available at http://www.genome.jp/kegg/atlas/. 10.1093/nar/gkn282 JF - Nucl. Acids Res. TI - KEGG Atlas mapping for global analysis of metabolic pathways SP - gkn282 KW - bioinformatics KW - kegg KW - pathway AU - Okuda, Shujiro AU - Yamada, Takuji AU - Hamajima, Masami AU - Itoh, Masumi AU - Katayama, Toshiaki AU - Bork, Peer AU - Goto, Susumu AU - Kanehisa, Minoru PY - 2008/05/13/ UR - http://dx.doi.org/10.1093/nar/gkn282 ER -