DAnTE: a statistical tool for quantitative analysis of -omics data

@article{citeulike:2774019, abstract = {Summary: DAnTE (Data Analysis Tool Extension) is a statistical tool designed to address challenges associated with quantitative bottom-up, shotgun proteomics data. This tool has also been demonstrated for microarray data and can easily be extended to other high-throughput data types. DAnTE features selected normalization methods, missing value imputation algorithms, peptide to protein rollup methods, an extensive array of plotting functions, and a comprehensive hypothesis testing scheme that can handle unbalanced data and random effects. The Graphical User Interface (GUI) is designed to be very intuitive and user friendly. Availability: DAnTE may be downloaded free of charge at http://ncrr.pnl.gov/software/ Contact: rds@pnl.gov or proteomics@pnl.gov Supplementary information: An example dataset with instructions on how to perform a series of analysis steps is available at http://ncrr.pnl.gov/software/ 10.1093/bioinformatics/btn217}, author = {Polpitiya, Ashoka D. and Qian, Wei-Jun and Jaitly, Navdeep and Petyuk, Vladislav A. and Adkins, Joshua N. and Camp, David G. and Anderson, Gordon A. and Smith, Richard D. }, citeulike-article-id = {2774019}, doi = {http://dx.doi.org/10.1093/bioinformatics/btn217}, journal = {Bioinformatics}, keywords = {bioinformatics, data, methods, tool}, month = {May}, pages = {btn217+}, posted-at = {2008-06-27 16:20:58}, priority = {2}, title = {DAnTE: a statistical tool for quantitative analysis of -omics data}, url = {http://dx.doi.org/10.1093/bioinformatics/btn217}, year = {2008} }

TY - JOUR ID - citeulike:2774019 L3 - citeulike-article-id:2774019 N2 - Summary: DAnTE (Data Analysis Tool Extension) is a statistical tool designed to address challenges associated with quantitative bottom-up, shotgun proteomics data. This tool has also been demonstrated for microarray data and can easily be extended to other high-throughput data types. DAnTE features selected normalization methods, missing value imputation algorithms, peptide to protein rollup methods, an extensive array of plotting functions, and a comprehensive hypothesis testing scheme that can handle unbalanced data and random effects. The Graphical User Interface (GUI) is designed to be very intuitive and user friendly. Availability: DAnTE may be downloaded free of charge at http://ncrr.pnl.gov/software/ Contact: rds@pnl.gov or proteomics@pnl.gov Supplementary information: An example dataset with instructions on how to perform a series of analysis steps is available at http://ncrr.pnl.gov/software/ 10.1093/bioinformatics/btn217 JF - Bioinformatics TI - DAnTE: a statistical tool for quantitative analysis of -omics data SP - btn217 KW - bioinformatics KW - data KW - methods KW - tool AU - Polpitiya, Ashoka AU - Qian, Wei-Jun AU - Jaitly, Navdeep AU - Petyuk, Vladislav AU - Adkins, Joshua AU - Camp, David AU - Anderson, Gordon AU - Smith, Richard PY - 2008/05/03/ UR - http://dx.doi.org/10.1093/bioinformatics/btn217 ER -