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raiyars methodspaper [97 articles]

Neue Publikationen in raiyars Bibliothek eingetragen unter dem Bezeichner: methodspaper. You can also see everyone's methodspaper.
  • Walking the Interactome for Prioritization of Candidate Disease Genes
    The American Journal of Human Genetics, Vol. In Press, Corrected Proof
    by Sebastian Kohler, Sebastian Bauer, Denise Horn, Peter N Robinson
    posted to prediction network methodspaper interaction genetic disease by raiyar on 2008-06-23 15:12:21 as ** along with 3 people daed jyuh kluck
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to proteomics prediction network methodspaper ellstalk disease by raiyar on 2008-06-19 15:46:55 as *** along with 19 people zwang balicea ptrobajo jfr brianb paolomarcatili thomaskelder gracio schuylrp jyuh tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl
  • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    Nature, Vol. 447, No. 7145. (7 June 2007), pp. 661-678.
    by The Wellcome Trust Case Control Consortium
    posted to variant snp qtl methodspaper human genetic disease complex_trait analysis by raiyar on 2008-05-02 03:15:02 as ** along with 20 people and 3 groups balicea wenhui ramensky jyuh jfr yas hpiwowar larios vplagnol frohike qmwwallace joepickrell massivemayhem Garamonfok PredictER hms jo_davies psique caseybrown mcgannd parkinson's disease references Bioinformatics T_lab
  • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by A Hamosh, AF Scott, JS Amberger, CA Bocchini, VA McKusick
    posted to methodspaper disease db by raiyar on 2008-04-30 16:00:59 as ** along with 6 people roys jyuh devakiram miguel chad_davis Nilza
  • Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.
    Nature, Vol. 414, No. 6862. (22 November 2001), pp. 450-453.
    by MD Katinka, S Duprat, E Cornillot, G Méténier, F Thomarat, G Prensier, V Barbe, E Peyretaillade, P Brottier, P Wincker, F Delbac, H El Alaoui, P Peyret, W Saurin, M Gouy, J Weissenbach, CP Vivarès
    posted to prediction parts-list mitochondria methodspaper genomics evolution by raiyar on 2008-04-25 15:19:22 as ** along with 1 person alexl
  • The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae.
    Mitochondrion, Vol. 6, No. 5. (October 2006), pp. 252-257.
    by D D'Elia, D Catalano, F Licciulli, A Turi, G Tripoli, D Porcelli, C Saccone, C Caggese
    posted to db drosophila methodspaper mitochondria parts-list by raiyar on 2008-04-22 00:23:01 as **
  • MitoProteome: mitochondrial protein sequence database and annotation system.
    Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004)
    by D Cotter, P Guda, E Fahy, S Subramaniam
    posted to db methodspaper mitochondria parts-list proteomics by raiyar on 2008-04-22 00:02:09 as **
  • Global Mapping of the Yeast Genetic Interaction Network
    Science, Vol. 303, No. 5659. (06 February 2004), pp. 808-813.
    by Amy HY Tong, Guillaume Lesage, Gary D Bader, Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F Berriz, Renee L Brost, Michael Chang, Yiqun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L Wong, Lan V Zhang, Hongwei Zhu, Christopher G Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P Roth, Grant W Brown, Brenda Andrews, Howard Bussey, Charles Boone
    posted to basis deletion genetic genomics interaction methodspaper network yeast by raiyar on 2008-04-21 22:13:09 as ** along with 18 people and 2 groups Takayuki ksiek tresch chasmand ldfu pcahan1 lfriedl lyongu luispedro opheliav tabu Chue nirfriedman nickluscombe koller patrycjam patrycja_missiuro jiny kdl EBI-regulation
  • Guilt by association: contextual information in genome analysis.
    Genome Res, Vol. 10, No. 8. (August 2000), pp. 1074-1077.
    by L Aravind
    posted to genomics interaction methodspaper network by raiyar on 2008-04-21 22:04:14 as ** along with 3 people and 1 group ujh lfriedl bluto kdl
  • Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond (Adaptive Computation and Machine Learning)
    (15 December 2001)
    by Bernhard Schölkopf, Alexander J Smola
    posted to technique statistics methodspaper basis analysis by raiyar on 2008-04-21 21:56:35 as ** along with 9 people and 1 group quianominorleo ecome sdvillal AbnerCYH wenhan librain jung_dalglish robotact singhsh Medical Image Analysis and Visualization @ OSU
  • Global analysis of protein expression in yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 737-741.
    by S Ghaemmaghami, WK Huh, K Bower, RW Howson, A Belle, N Dephoure, EK O'Shea, JS Weissman
    posted to ht methodspaper proteomics yeast by raiyar on 2008-04-21 21:45:10 as ** along with 9 people chasmand dylanwalker faion rebeccahainess nirfriedman nm nicoleq roys michaelbarton
  • Proteomic view of mitochondrial function
    Genome Biology, Vol. 9 (29 February 2008), 209.
    by Kai S Dimmer, Doron Rapaport
    posted to methodspaper mitochondria proteomics review by raiyar on 2008-04-21 21:07:42 as ** along with 1 person jdiezperezj
  • notes Identification of novel modulators of mitochondrial function by a genome-wide RNAi screen in Drosophila melanogaster.
    Genome research, Vol. 18, No. 1. (January 2008), pp. 123-136.
    by J Chen, X Shi, R Padmanabhan, Q Wang, Z Wu, SC Stevenson, M Hild, D Garza, H Li
    posted to drosophila methodspaper mitochondria parts-list rnai by raiyar on 2008-04-21 15:35:06 as **
  • The Elements of Statistical Learning
    (09 August 2001)
    by T Hastie, R Tibshirani, JH Friedman
    posted to analysis basis integration methodspaper statistics technique by raiyar on 2008-04-21 15:07:47 as ** along with 39 people and 10 groups jaonary quianominorleo Repton blueskies amirsaffari ansobol pdlug yaroslavvb bigga jelsas davidr gyuli garyfeng aufrank neteler leidner chad_davis jekky balajis Jaykul balicea sdvillal donade bigbossman sbarthelme bedo AbnerCYH nojhan bamberg kgajos deysandeep petrposik dbgrant nmdang alfirk brianmc jung_dalglish dquercia robotact CMU-HCII Blog_and_Wiki_Research automatic_summarization ReadingLab ur-cls ASR EvolutionaryComputation Metaheuristics Optimization CSBBGraphTheory
  • Mitochondrial Diseases in Man and Mouse
    Science, Vol. 283, No. 5407. (5 March 1999), pp. 1482-1488.
    by Douglas C Wallace
    posted to basis disease human methodspaper mitochondria review by raiyar on 2008-04-21 13:12:31 as **
  • The epidemiology of mitochondrial disorders--past, present and future.
    Biochimica et biophysica acta, Vol. 1659, No. 2-3. (6 December 2004), pp. 115-120.
    by AM Schaefer, RW Taylor, DM Turnbull, PF Chinnery
    posted to disease methodspaper mitochondria parts-list review by raiyar on 2008-04-21 13:01:09 as **
  • Mitochondrial disease: a practical approach for primary care physicians.
    Pediatrics, Vol. 120, No. 6. (December 2007), pp. 1326-1333.
    by RH Haas, S Parikh, MJ Falk, RP Saneto, NI Wolf, N Darin, BH Cohen
    posted to clinical disease methodspaper mitochondria review by raiyar on 2008-04-17 15:19:46 as **
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to disease expression genetic human methodspaper model network qtl systems by raiyar on 2008-04-15 13:10:34 as read along with 11 people and 1 group chrisamiller echinotrix jyuh natstreet sanchezbuelna djkt lp2 jo_davies shikin caseybrown ptrobajo GeneGo
  • MPact: the MIPS protein interaction resource on yeast.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by U Güldener, M Münsterkötter, M Oesterheld, P Pagel, A Ruepp, HW Mewes, V Stümpflen
    posted to db interaction methodspaper yeast by raiyar on 2008-04-14 14:14:26 as ** along with 2 people carlk chad_davis
  • A genetic approach to identifying mitochondrial proteins.
    Nature biotechnology, Vol. 21, No. 3. (March 2003), pp. 287-293.
    by T Ozawa, Y Sako, M Sato, T Kitamura, Y Umezawa
    posted to genetic ht methodspaper mitochondria parts-list technique by raiyar on 2008-04-14 13:51:15 as **
  • A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365.
    by Richard Bonneau, Marc T Facciotti, David J Reiss, Amy K Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H Johnson, Christopher J Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun Chang, Jocelyne Diruggiero, Carl H Johnson, Leroy Hood, Nitin S Baliga
    posted to methodspaper model network prediction by raiyar on 2008-04-11 17:03:14 as ** along with 4 people jyuh tmmurali oelemento emptyhb
  • Droplet microfluidics.
    Lab on a chip, Vol. 8, No. 2. (February 2008), pp. 198-220.
    by SY Teh, R Lin, LH Hung, AP Lee
    posted to methodspaper technique tool by raiyar on 2008-04-11 16:09:40 as **
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to analysis bioinformatics methodspaper proteomics review by raiyar on 2008-04-11 15:56:56 as ** along with 4 people nuin jyuh nedwards olberd
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to genomics integration interaction methodspaper prediction by raiyar on 2008-04-11 14:11:32 as ** along with 18 people and 2 groups frohike carlk lfriedl balajis opheliav yuval wnpx nickluscombe ruvido massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
  • KEGG for linking genomes to life and the environment
    Nucl. Acids Res. (12 December 2007), gkm882.
    by Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
    posted to bioinformatics db genomics interaction metabolic methodspaper prediction systems tool by raiyar on 2008-04-11 13:29:06 as ** along with 9 people TheresaNiederberger natstreet hpaces massivemayhem irenas jyuh barriot renatomilani shung
  • Reactome: a knowledgebase of biological pathways and processes
    Genome Biology, Vol. 8 (16 March 2007), R39.
    by Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Geeta Joshi-Tope, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
    posted to bioinformatics db interaction metabolic methodspaper tool by raiyar on 2008-04-11 13:25:41 as ** along with 6 people AlexanderPico jyuh dragonrez jfr balajis toshiaki_katayama
  • Building the mitochondrial proteome.
    Expert Rev Proteomics, Vol. 2, No. 4. (August 2005), pp. 541-551.
    by S Da Cruz, PA Parone, JC Martinou
    posted to methodspaper mitochondria proteomics technique by raiyar on 2008-04-01 15:38:36 as **
  • Protein identification using 2D-LC-MS/MS
    Methods, Vol. 35, No. 3. (March 2005), pp. 248-255.
    by Claire Delahunty, Yates
    posted to basis methodspaper proteomics technique by raiyar on 2008-04-01 14:01:02 as ** along with 1 person agileproteomics
  • Global systems biology, personalized medicine and molecular epidemiology
    Mol Syst Biol, Vol. 2 (3 October 2006)
    by Jeremy K Nicholson
    posted to disease interest methodspaper review systems by raiyar on 2008-03-24 16:17:49 as ** along with 1 person massivemayhem
  • Computational prediction of subcellular localization.
    Methods Mol Biol, Vol. 390 (2007), pp. 429-466.
    by K Nakai, P Horton
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 12:47:55 as **
  • An RNAi screen for mitochondrial proteins required to maintain the morphology of the organelle in C. elegans.
    J Biochem (2 January 2008)
    by Ryohei Ichishita, Kousuke Tanaka, Yoshimi Sugiura, Tomoko Sayano, Katsuyoshi Mihara, Toshihiko Oka
    posted to methodspaper mitochondria rnai by raiyar on 2008-02-22 12:42:29 as **
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to bioinformatics ht integration interaction methodspaper yeast by raiyar on 2008-02-22 12:21:03 as ** along with 19 people and 6 groups carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • MitoProt, a Macintosh application for studying mitochondrial proteins.
    Comput Appl Biosci, Vol. 11, No. 4. (August 1995), pp. 441-447.
    by MG Claros
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:12:26 as **
  • Predotar: A tool for rapidly screening proteomes for <B><I>N</I></B>-terminal targeting sequences
    PROTEOMICS, Vol. 4, No. 6. (2004), pp. 1581-1590.
    by Ian Small, Nemo Peeters, Fabrice Legeai, Claire Lurin
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:10:50 as **
  • WoLF PSORT: protein localization predictor.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007)
    by P Horton, KJ Park, T Obayashi, N Fujita, H Harada, CJ Adams-Collier, K Nakai
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:09:32 as **
  • PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization.
    Trends Biochem Sci, Vol. 24, No. 1. (January 1999), pp. 34-36.
    by K Nakai, P Horton
    posted to basis bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:07:57 as **
  • MITOPRED: a web server for the prediction of mitochondrial proteins.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by C Guda, P Guda, E Fahy, S Subramaniam
    posted to bioinformatics human methodspaper mitochondria prediction yeast by raiyar on 2008-02-22 10:03:41 as **
  • Global analysis of protein localization in budding yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691.
    by WK Huh, JV Falvo, LC Gerke, AS Carroll, RW Howson, JS Weissman, EK O'Shea
    posted to basis genomics localization methodspaper mitochondria yeast by raiyar on 2008-02-21 23:24:08 as ** along with 9 people and 1 group hplatero Cortel lfriedl opheliav rebeccahainess nirfriedman gurkanbebek koller iris_2001 kdl
  • STRING 7--recent developments in the integration and prediction of protein interactions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by C von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, P Bork
    posted to integration interaction methodspaper proteomics systems by raiyar on 2008-02-21 19:18:48 as ** along with 9 people higueruelo carlk renatomilani jyuh kuhn balajis fisherp massivemayhem larsjuhljensen
  • A genetic method to identify mitochondrial proteins in living Mammalian cells.
    Methods Mol Biol, Vol. 390 (2007), pp. 119-130.
    by T Ozawa, Y Umezawa
    posted to genetic human methodspaper mitochondria parts-list technique by raiyar on 2008-02-21 13:51:00 as **
  • Mathematical multi-locus approaches to localizing complex human trait genes
    Nat Rev Genet, Vol. 4, No. 9. (2003), pp. 701-709.
    by Josephine Hoh, Jurg Ott
    posted to complex_trait disease genetic methodspaper statistics by raiyar on 2008-02-21 10:44:02 as *
  • The road to genome-wide association studies
    Nature Reviews Genetics (19 February 2008)
    by L Kruglyak
    posted to complex_trait disease genomics human methodspaper qtl review variant by raiyar on 2008-02-21 08:23:45 as ***
  • Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.
    Proc Natl Acad Sci U S A, Vol. 100, No. 2. (21 January 2003), pp. 605-610.
    by VK Mootha, P Lepage, K Miller, J Bunkenborg, M Reich, M Hjerrild, T Delmonte, A Villeneuve, R Sladek, F Xu, GA Mitchell, C Morin, M Mann, TJ Hudson, B Robinson, JD Rioux, ES Lander
    posted to disease example integration methodspaper mitochondria by raiyar on 2008-02-20 10:20:29 as **
  • Global organellar proteomics
    Trends in Biotechnology, Vol. 21, No. 2. (February 2003), pp. 82-88.
    by Steven W Taylor, Eoin Fahy, Soumitra S Ghosh
    posted to yeast sgtcnih review parts-list mitochondria methodspaper human genomics by raiyar on 2008-02-19 14:23:06 as ** along with 1 person and 1 group marie-aline ecotoxurbo
  • Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes
    Genome Biology, Vol. 8, No. 12. (2007)
    by Kriston Mcgary, Insuk Lee, Edward Marcotte
    posted to bioinformatics complex_trait disease genomics methodspaper model mutant network prediction yeast by raiyar on 2008-02-18 11:01:55 as *** along with 4 people entropy cjeans biomcgary barriot
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to bioinformatics human interaction methodspaper network prediction textmining by raiyar on 2008-01-28 13:58:50 as **** along with 16 people and 3 groups setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss grahamc kdl Bioinformatics generif_paper
  • Yeast models of human mitochondrial diseases.
    IUBMB Life, Vol. 55, No. 2. (February 2003), pp. 83-95.
    by A Barrientos
    posted to defect disease human methodspaper mitochondria model mutant projmt review systems yeast by raiyar on 2008-01-21 11:05:32 as ****
  • Yeast models of human mitochondrial diseases: from molecular mechanisms to drug screening.
    Biotechnol J, Vol. 1, No. 3. (March 2006), pp. 270-281.
    by C Schwimmer, M Rak, L Lefebvre-Legendre, S Duvezin-Caubet, G Plane, JP di Rago
    posted to sgtcnih review projmt model mitochondria methodspaper disease compound by raiyar on 2008-01-21 10:33:47 as *****
  • Systematic screens for human disease genes, from yeast to human and back.
    Mol Biosyst, Vol. 4, No. 1. (January 2008), pp. 18-29.
    by F Perocchi, E Mancera, LM Steinmetz
    posted to disease human integration methodspaper mitochondria rescue review systems yeast by raiyar on 2008-01-18 13:04:11 as read
  • MPV17 encodes an inner mitochondrial membrane protein and is mutated in infantile hepatic mitochondrial DNA depletion
    Nature Genetics, Vol. 38, No. 5. (02 April 2006), pp. 570-575.
    by Antonella Spinazzola, Carlo Viscomi, Erika Fernandez-Vizarra, Franco Carrara, Pio D'Adamo, Sarah Calvo, René M Marsano, Claudia Donnini, Hans Weiher, Pietro Strisciuglio, Rossella Parini, Emmanuelle Sarzi, Alicia Chan, Salvatore Dimauro, Agnes Rötig, Paolo Gasparini, Iliana Ferrero, Vamsi K Mootha, Valeria Tiranti, Massimo Zeviani
    posted to disease example genetic human im methodspaper mitochondria mtdna by raiyar on 2008-01-14 14:25:35 as ***
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