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raiyars library [207 articles]

Neue Artikel in raiyars library ordered by importance.
  • Allotopic mRNA localization to the mitochondrial surface rescues respiratory chain defects in fibroblasts harboring mitochondrial DNA mutations affecting complex I or v subunits.
    Rejuvenation research, Vol. 10, No. 2. (June 2007), pp. 127-144.
    by C Bonnet, V Kaltimbacher, S Ellouze, S Augustin, P Bénit, V Forster, P Rustin, JA Sahel, M Corral-Debrinski
    posted to projmt mtdna mitotarget mitochondria human atp6 allotopic by raiyar on 2008-04-23 15:15:38 as *****
  • Expression of algal nuclear ATP synthase subunit 6 in human cells results in protein targeting to mitochondria but no assembly into ATP synthase.
    Rejuvenation research, Vol. 9, No. 4. (2006), pp. 455-469.
    by M Bokori-Brown, IJ Holt
    posted to sgtcnih projmt mtdna mitochondria human chlamydomonas atp6 allotopic by raiyar on 2008-04-02 10:37:07 as *****
  • Yeast models of human mitochondrial diseases: from molecular mechanisms to drug screening.
    Biotechnol J, Vol. 1, No. 3. (March 2006), pp. 270-281.
    by C Schwimmer, M Rak, L Lefebvre-Legendre, S Duvezin-Caubet, G Plane, JP di Rago
    posted to sgtcnih review projmt model mitochondria methodspaper disease compound by raiyar on 2008-01-21 10:33:47 as *****
  • Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitochondrial DNA-encoded gene, to the nucleus
    Nat Genet, Vol. 30, No. 4. (April 2002), pp. 394-399.
    by Giovanni Manfredi, Jin Fu, Joseline Ojaimi, James E Sadlock, Jennifer Q Kwong, John Guy, Eric A Schon
    posted to sgtcnih projmt mutant mtdna mitochondria human example disease defect atp6 allotopic by raiyar on 2007-12-14 13:26:08 as *****
  • Why do we still have a maternally inherited mitochondrial DNA? Insights from evolutionary medicine.
    Annu Rev Biochem, Vol. 76 (2007), pp. 781-821.
    by DC Wallace
    posted to yeast sgtcnih review respiration projmt mutant mtknockout mtdna mitochondria human evolution disease aging by raiyar on 2007-12-13 14:55:46 as *****
  • Yeast cells lacking the mitochondrial gene encoding the ATP synthase subunit 6 exhibit a selective loss of complex IV and unusual mitochondrial morphology.
    J Biol Chem, Vol. 282, No. 15. (13 April 2007), pp. 10853-10864.
    by M Rak, E Tetaud, F Godard, I Sagot, B Salin, S Duvezin-Caubet, PP Slonimski, J Rytka, JP di Rago
    posted to complex deletion example mitochondria mtdna mtknockout mutant projmt technique yeast by raiyar on 2007-11-21 14:03:35 as *****
  • Genetic transformation of Saccharomyces cerevisiae and Chlamydomonas reinhardtii mitochondria.
    Methods Cell Biol, Vol. 80 (2007), pp. 525-548.
    by N Bonnefoy, C Remacle, TD Fox
    posted to technique sgtcnih review projmt mutant mtknockout mtdna mitochondria by raiyar on 2007-11-21 13:58:57 as *****
  • Disease gene discovery through integrative genomics.
    Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 381-406.
    by C Giallourakis, C Henson, M Reich, X Xie, VK Mootha
    posted to complex_trait disease genetic genomics integration mendelian methodspaper network by raiyar on 2007-11-16 13:10:04 as ***** along with 1 person jo_davies
  • The genetic architecture of quantitative traits.
    Annu Rev Genet, Vol. 35 (2001), pp. 303-339.
    by TF Mackay
    posted to analysis qtl review by raiyar on 2007-10-16 11:07:02 as ***** along with 2 people RMGraze larios
  • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
    Genetics, Vol. 121, No. 1. (January 1989), pp. 185-199.
    by ES Lander, D Botstein
    posted to analysis mendelian methodspaper qtl rflp by raiyar on 2007-10-16 10:58:23 as ***** along with 4 people and 1 group dpollard Ayest lp2 mcgannd RockmanLab
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to yeast technique prediction network model methodspaper metabolic_profiling deletion bioinformatics by raiyar on 2007-06-08 09:33:01 as ***** along with 1 person and 1 group alexg steinmetzlab
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to analysis array bioinformatics deletion expression genomics integration methodspaper model network proteomics systems yeast by raiyar on 2007-05-26 18:25:14 as ***** along with 10 people and 3 groups thomaskelder shikin snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek GeneGo Bioinformatics steinmetzlab
  • High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 692-696.
    by J Allen, HM Davey, D Broadhurst, JK Heald, JJ Rowland, SG Oliver, DB Kell
    posted to analysis bioinformatics defect deletion expression genomics integration metabolic_profiling systems yeast by raiyar on 2007-05-18 16:06:54 as ***** along with 3 people and 3 groups dbk irenas katerinakal streptomyces dbk-lab steinmetzlab
  • A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
    Nat Biotechnol, Vol. 19, No. 1. (January 2001), pp. 45-50.
    by LM Raamsdonk, B Teusink, D Broadhurst, N Zhang, A Hayes, MC Walsh, JA Berden, KM Brindle, DB Kell, JJ Rowland, HV Westerhoff, K van Dam, SG Oliver
    posted to analysis bioinformatics defect deletion ht integration metabolic_profiling yeast by raiyar on 2007-05-18 16:05:35 as ***** along with 4 people and 3 groups dbk irenas dullhunk katerinakal streptomyces dbk-lab steinmetzlab
  • The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1465. (29 January 2006), pp. 147-161.
    by JL Griffin
    posted to genomics metabolic_profiling review systems by raiyar on 2007-05-14 17:04:23 as ***** along with 1 group steinmetzlab
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
    posted to metabolic model mutant network yeast by raiyar on 2007-04-03 16:35:12 as ***** along with 6 people and 1 group hryk tmmurali koller cjeans patrycja_missiuro edwardmorrissey steinmetzlab
  • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
    BMC Bioinformatics, Vol. 1 (2000)
    by JS Edwards, BO Palsson
    posted to parts-list network mutant model genes flux deletion bioinformatics analysis by raiyar on 2007-01-25 11:29:42 as ***** along with 1 person and 2 groups icases steinmetzlab TNT
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to systems sgtcnih regulation network model ht by raiyar on 2007-01-25 10:42:56 as ***** along with 5 people and 2 groups JeremyZucker Retchless lfriedl RMGraze alexg kdl steinmetzlab
  • Metabolic modeling of microbial strains in silico.
    Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186.
    by MW Covert, CH Schilling, I Famili, JS Edwards, II Goryanin, E Selkov, BO Palsson
    posted to systems review network model metabolic integration flux bioinformatics by raiyar on 2007-01-24 17:05:10 as ***** along with 1 person and 2 groups icases steinmetzlab TNT
  • Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.
    J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11683-11695.
    by I Thiele, ND Price, TD Vo, BØ Palsson
    posted to network model mitochondria metabolic human flux disease by raiyar on 2007-01-24 17:00:01 as ***** along with 1 group steinmetzlab
  • Mitochondria: dynamic organelles in disease, aging, and development.
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1241-1252.
    by DC Chan
    posted to aging development disease human methodspaper mitochondria review by raiyar on 2007-01-09 21:49:09 as ***** along with 1 person and 1 group inbetweener steinmetzlab
  • Enabling personalized cancer medicine through analysis of gene-expression patterns
    Nature, Vol. 452, No. 7187. (02 April 2008), pp. 564-570.
    by Laura, René Bernards
    posted to review human expression ellstalk disease cancer by raiyar on 2008-06-19 15:37:20 as ****
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to bioinformatics human interaction methodspaper network prediction textmining by raiyar on 2008-01-28 13:58:50 as **** along with 16 people and 3 groups setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss grahamc kdl Bioinformatics generif_paper
  • Limitations to in vivo import of hydrophobic proteins into yeast mitochondria. The case of a cytoplasmically synthesized apocytochrome b.
    Eur J Biochem, Vol. 228, No. 3. (15 March 1995), pp. 762-771.
    by MG Claros, J Perea, Y Shu, FA Samatey, JL Popot, C Jacq
    posted to allotopic basis cob example mitochondria mtdna mtknockout projmt technique yeast by raiyar on 2008-01-25 16:25:40 as ****
  • The typically mitochondrial DNA-encoded ATP6 subunit of the F1F0-ATPase is encoded by a nuclear gene in Chlamydomonas reinhardtii.
    J Biol Chem, Vol. 277, No. 8. (22 February 2002), pp. 6051-6058.
    by S Funes, E Davidson, MG Claros, R van Lis, X Pérez-Martínez, M Vázquez-Acevedo, MP King, D González-Halphen
    posted to atp6 basis chlamydomonas example mitochondria mtdna by raiyar on 2008-01-25 16:23:22 as ****
  • Yeast models of human mitochondrial diseases.
    IUBMB Life, Vol. 55, No. 2. (February 2003), pp. 83-95.
    by A Barrientos
    posted to defect disease human methodspaper mitochondria model mutant projmt review systems yeast by raiyar on 2008-01-21 11:05:32 as ****
  • SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417.
    by H Shatkay, A Höglund, S Brady, T Blum, P Dönnes, O Kohlbacher
    posted to bioinformatics integration localization methodspaper prediction textmining by raiyar on 2008-01-07 22:20:45 as ****
  • POCUS: mining genomic sequence annotation to predict disease genes
    Genome Biology, Vol. 4, No. 11. (2003)
    by Frances Turner, Daniel Clutterbuck, Colin Semple
    posted to analysis bioinformatics disease genetic genomics integration methodspaper by raiyar on 2007-12-19 21:15:38 as ****
  • Gaining confidence in high-throughput protein interaction networks.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 78-85.
    by JS Bader, A Chaudhuri, JM Rothberg, J Chant
    posted to ht interaction methodspaper network proteomics by raiyar on 2007-12-19 21:13:44 as **** along with 9 people and 1 group ellakat dragonrez lfriedl gurkanbebek cjeans iris_2001 patrycjam patrycja_missiuro Evangelia kdl
  • Detecting multiple associations in genome-wide studies.
    Hum Genomics, Vol. 2, No. 5. (March 2006), pp. 310-317.
    by F Dudbridge, A Gusnanto, BP Koeleman
    posted to complex_trait disease genomics methodspaper prediction review by raiyar on 2007-12-19 21:11:37 as ****
  • Deficiency of the ADP-forming succinyl-CoA synthase activity is associated with encephalomyopathy and mitochondrial DNA depletion.
    Am J Hum Genet, Vol. 76, No. 6. (June 2005), pp. 1081-1086.
    by O Elpeleg, C Miller, E Hershkovitz, M Bitner-Glindzicz, G Bondi-Rubinstein, S Rahman, A Pagnamenta, S Eshhar, A Saada
    posted to defect disease example genes methodspaper mitochondria mtdna by raiyar on 2007-12-19 20:12:00 as ****
  • Systems biology and new technologies enable predictive and preventative medicine.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 640-643.
    by L Hood, JR Heath, ME Phelps, B Lin
    posted to systems review model methodspaper integration ellstalk disease by raiyar on 2007-12-18 01:46:34 as **** along with 5 people and 1 group AlexanderPico shikin wnpx cconboy maburkitt GeneGo
  • Allotopic expression of yeast mitochondrial maturase to study mitochondrial import of hydrophobic proteins.
    Methods Enzymol, Vol. 264 (1996), pp. 389-403.
    by MG Claros, J Perea, C Jacq
    posted to allotopic example localization mitochondria mtdna projmt technique by raiyar on 2007-11-17 16:03:54 as ****
  • Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.
    Nat Genet, Vol. 33 Suppl (March 2003), pp. 228-237.
    by D Botstein, N Risch
    posted to complex_trait disease human mendelian methodspaper by raiyar on 2007-11-16 13:06:28 as **** along with 2 people jo_davies massivemayhem
  • Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast.
    J Exp Biol, Vol. 201, No. Pt 8. (April 1998), pp. 1177-1195.
    by KE Kwast, PV Burke, RO Poyton
    posted to mitochondria regulation respiration transcription yeast by raiyar on 2007-06-27 07:16:59 as **** along with 1 group steinmetzlab
  • Building the power house: recent advances in mitochondrial studies through proteomics and systems biology.
    Am J Physiol Cell Physiol, Vol. 292, No. 1. (January 2007)
    by TD Vo, BO Palsson
    posted to bioinformatics methodspaper mitochondria proteomics review systems by raiyar on 2007-05-14 16:54:33 as **** along with 2 people and 1 group jyuh kristen steinmetzlab
  • Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data.
    J Biol Chem, Vol. 279, No. 38. (17 September 2004), pp. 39532-39540.
    by TD Vo, HJ Greenberg, BO Palsson
    posted to bioinformatics flux ht human metabolic_profiling methodspaper mitochondria systems by raiyar on 2007-05-14 14:18:48 as **** along with 1 person and 1 group kristen steinmetzlab
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
    posted to defect flux ht metabolic_profiling mutant network systems by raiyar on 2007-04-27 13:34:19 as **** along with 4 people and 1 group IgorG jjray dylan77 ytoya steinmetzlab
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to bioinformatics flux metabolic methodspaper model network prediction statistics systems technique by raiyar on 2007-04-23 16:54:29 as **** along with 4 people and 1 group jyuh wnpx fishtank jrbanga steinmetzlab
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
    posted to bioinformatics metabolic model network prediction review systems technique by raiyar on 2007-04-23 15:48:44 as **** along with 2 people and 1 group wnpx fishtank steinmetzlab
  • Abnormal mitochondrial respiration in failed human myocardium.
    J Mol Cell Cardiol, Vol. 32, No. 12. (December 2000), pp. 2361-2367.
    by VG Sharov, AV Todor, N Silverman, S Goldstein, HN Sabbah
    posted to disease human mitochondria respiration technique by raiyar on 2007-04-06 15:16:17 as **** along with 1 group steinmetzlab
  • In vitro assessment of pancreatic islet vitality by oxymetry.
    Transplant Proc, Vol. 37, No. 8. (October 2005), pp. 3454-3456.
    by K Zacharovova, Z Berkova, T Spacek, J Kriz, E Dovolilova, P Girman, T Koblas, P Jezek, F Saudek
    posted to disease mitochondria respiration technique by raiyar on 2007-04-06 15:07:25 as **** along with 1 group steinmetzlab
  • A respirometer for investigating oxidative cell metabolism: toward optimization of respiratory studies.
    Anal Biochem, Vol. 218, No. 2. (1 May 1994), pp. 338-342.
    by T Haller, M Ortner, E Gnaiger
    posted to technique sgtcnih respiration mitochondria flux diauxic by raiyar on 2007-04-06 15:05:15 as **** along with 1 group steinmetzlab
  • Towards a molecular understanding of adaptive thermogenesis.
    Nature, Vol. 404, No. 6778. (6 April 2000), pp. 652-660.
    by BB Lowell, BM Spiegelman
    posted to disease genetic mitochondria review by raiyar on 2007-04-06 14:48:13 as **** along with 1 group steinmetzlab
  • Meet the human metabolome
    Nature, Vol. 446, No. 7131. (28 February 2007), pp. 8-8.
    by Helen Pearson
    posted to human metabolic model by raiyar on 2007-03-31 21:39:44 as **** along with 1 person and 1 group jyuh steinmetzlab
  • Isotopomer analysis of myocardial substrate metabolism: a systems biology approach.
    Biotechnol Bioeng, Vol. 95, No. 5. (5 December 2006), pp. 972-983.
    by TD Vo, BO Palsson
    posted to bioinformatics metabolic mitochondria model respiration systems by raiyar on 2007-03-21 13:06:49 as **** along with 1 group steinmetzlab
  • Temperature-sensitive yeast mutants defective in mitochondrial inheritance.
    J Cell Biol, Vol. 111, No. 3. (September 1990), pp. 967-976.
    by SJ McConnell, LC Stewart, A Talin, MP Yaffe
    posted to yeast ts mutant mitochondria by raiyar on 2007-01-22 16:31:10 as **** along with 1 group steinmetzlab
  • MitoP2: the mitochondrial proteome database--now including mouse data.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by H Prokisch, C Andreoli, U Ahting, K Heiss, A Ruepp, C Scharfe, T Meitinger
    posted to yeast sgtcnih parts-list model mitochondria methodspaper human by raiyar on 2007-01-22 12:31:36 as **** along with 1 group steinmetzlab
  • Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae.
    Mol Biol Cell, Vol. 13, No. 3. (March 2002), pp. 847-853.
    by KS Dimmer, S Fritz, F Fuchs, M Messerschmitt, N Weinbach, W Neupert, B Westermann
    posted to deletion genomics methodspaper mitochondria respiration yeast by raiyar on 2007-01-19 14:33:40 as **** along with 1 group steinmetzlab
  • 'Omics' of the mitochondrion
    Nat Biotech, Vol. 21, No. 3. (March 2003), pp. 239-240.
    by Benedikt Westermann, Walter Neupert
    posted to genomics ht human methodspaper mitochondria by raiyar on 2007-01-19 13:50:49 as **** along with 1 group steinmetzlab
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