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plofjes library [55 articles]

Neue Artikel in plofjes Bibliothek.
  • A new platform linking chromosomal and sequence information.
    Chromosome Res, Vol. 15, No. 3. (April 2007), pp. 327-340.
    by Agata Kowalska, Eva Bozsaky, Thomas Ramsauer, Dietmar Rieder, Gabriela Bindea, Thomas Lörch, Zlatko Trajanoski, Peter F Ambros
    posted to chromatin motif sequence by plofje on 2007-06-20 12:19:28 as **
  • Kin recognition in an annual plant
    Biology letters (2007)
    by SA Dudley, AL File
    posted to plant recognition by plofje on 2007-06-14 07:24:30 as **
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to analysis encode functional genome human by plofje on 2007-06-14 07:06:30 as ** along with 22 people and 2 groups jasonflannick ep161302 jyuh cmmorel dpollard ilh djkt ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 julianjonker gjuggler drbal maralena EisenLab SorgerLab
  • The evolution of gene regulation by transcription factors and microRNAs
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 93-103.
    by Kevin Chen, Nikolaus Rajewsky
    posted to gene mirna regulation review by plofje on 2007-04-24 08:27:41 as *** along with 19 people and 4 groups heliopais bootsy aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena EisenLab microRNA Nie GIG
  • Computational approaches to unveiling ancient genome duplications.
    Nat Rev Genet, Vol. 5, No. 10. (October 2004), pp. 752-763.
    by Y Van de Peer
    posted to duplication genome by plofje on 2007-04-20 08:37:35 as **
  • Genome duplication and the origin of angiosperms
    Trends in Ecology & Evolution, Vol. 20, No. 11. (November 2005), pp. 591-597.
    by Stefanie De Bodt, Steven Maere, Yves Van de Peer
    posted to evolution genome by plofje on 2007-04-20 08:35:01 as ** along with 3 people and 1 group cmm echinotrix timflutre FAB-lab
  • AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins.
    Bioinformatics (6 December 2006)
    by Zong Hong H Zhang, Judice L Y L Koh, Guang Lan L Zhang, Khar Heng H Choo, Martti T T Tammi, Joo Chuan C Tong
    posted to prediction allergenicity by plofje on 2007-01-16 09:43:12 as ** along with 1 person beapen
  • Gene discovery and annotation using LCM-454 transcriptome sequencing.
    Genome Res, Vol. 17, No. 1. (January 2007), pp. 69-73.
    by SJ Emrich, WB Barbazuk, L Li, PS Schnable
    posted to genome annotation 454 by plofje on 2007-01-16 09:41:56 as ** along with 5 people semrich jyuh operon usagi-kirin ghattem
  • Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 636-643.
    by N Shah, O Couronne, LA Pennacchio, M Brudno, S Batzoglou, EW Bethel, EM Rubin, B Hamann, I Dubchak
    posted to dna visualization by plofje on 2007-01-05 12:35:17 as **
  • Identification of novel regulatory modules in dicot plants using expression data and comparative genomics
    Genome Biology, Vol. 7 (07 November 2006), R103.
    by Klaas Vandepoele, Tineke Casneuf, Yves Van de Peer
    posted to comparative expression genomics modules regulatory by plofje on 2006-11-10 15:19:45 as ** along with 1 person and 1 group kengg Plantandetc
  • MicroRNAs and Their Regulatory Roles in Plants.
    Annu Rev Plant Biol (30 January 2006)
    by Matthew W W Jones-Rhoades, David P P Bartel, Bonnie Bartel
    posted to mirna plant regulatory role by plofje on 2006-11-07 11:39:35 as ** along with 5 people and 4 groups natstreet marcius tardigrade andersbj cdawson microRNA BioinfoCIPF SGU-CIPF GIG
  • Computational prediction of miRNAs in Arabidopsis thaliana.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 78-91.
    by A Adai, C Johnson, S Mlotshwa, S Archer-Evans, V Manocha, V Vance, V Sundaresan
    posted to arabidopsis mirna prediction by plofje on 2006-11-07 11:37:32 as ** along with 5 people and 2 groups imouthesmp mortenlindow cdawson braingrind natstreet microRNA GIG
  • Elucidation of the Small RNA Component of the Transcriptome
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1567-1569.
    by Cheng Lu, Shivakundan S Tej, Shujun Luo, Christian D Haudenschild, Blake C Meyers, Pamela J Green
    posted to arabidopsis rna small by plofje on 2006-11-07 11:14:52 as **** along with 4 people and 4 groups imouthesmp marcius mortenlindow cdawson microRNA BioinfoCIPF SGU-CIPF GIG
  • DNA methylation profiling of human chromosomes 6, 20 and 22.
    Nat Genet (29 October 2006)
    by Florian Eckhardt, Joern Lewin, Rene Cortese, Vardhman K K Rakyan, John Attwood, Matthias Burger, John Burton, Tony V V Cox, Rob Davies, Thomas A A Down, Carolina Haefliger, Roger Horton, Kevin Howe, David K K Jackson, Jan Kunde, Christoph Koenig, Jennifer Liddle, David Niblett, Thomas Otto, Roger Pettett, Stefanie Seemann, Christian Thompson, Tony West, Jane Rogers, Alex Olek, Kurt Berlin, Stephan Beck
    posted to dna human methylation by plofje on 2006-11-04 06:17:30 as ** along with 3 people jo_davies shigepong epigenetics
  • Natural selection on human microRNA binding sites inferred from SNP data.
    Nat Genet (29 October 2006)
    by Kevin Chen, Nikolaus Rajewsky
    posted to binding_site mirna natural_selection by plofje on 2006-11-04 06:17:07 as ** along with 8 people and 3 groups bpcusack jfr tardigrade andersbj mtagaya ealloza Garamonfok heliopais Bioinformatics microRNA BioinfoCIPF
  • GECO - linear visualization for comparative genomics.
    Bioinformatics (31 October 2006)
    by C T T Kuenne, R Ghai, T Chakraborty, T Hain
    posted to comparative genomics visualization by plofje on 2006-11-04 05:25:48 as ** along with 1 person operon
  • OmicBrowse: a browser of multidimensional omics annotations.
    Bioinformatics (31 October 2006)
    by Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Yoshiyuki Sakaki
    posted to omics visualization by plofje on 2006-11-04 05:24:26 as ** along with 1 person jyuh
  • Complications in mammalian microRNA target prediction.
    Methods Mol Biol, Vol. 342 (2006), pp. 115-127.
    by NR Smalheiser, VI Torvik
    posted to mirna target by plofje on 2006-11-01 17:44:26 as **
  • Methodologies for high-throughput expression profiling of microRNAs.
    Methods Mol Biol, Vol. 342 (2006), pp. 139-157.
    by P Einat
    posted to expression mirna profiling by plofje on 2006-11-01 17:44:13 as **
  • Gene silencing in vitro and in vivo using intronic microRNAs.
    Methods Mol Biol, Vol. 342 (2006), pp. 295-312.
    by SL Lin, SY Ying
    posted to gene intron mirna silencing by plofje on 2006-11-01 14:35:39 as **
  • Evolution of MicroRNAs.
    Methods Mol Biol, Vol. 342 (2006), pp. 334-350.
    by A Tranzer, PF Stadler
    posted to evolution mirna by plofje on 2006-11-01 14:34:11 as **** along with 1 person tardigrade
  • The white spot syndrome virus DNA genome sequence.
    Virology, Vol. 286, No. 1. (20 July 2001), pp. 7-22.
    by MC van Hulten, J Witteveldt, S Peters, N Kloosterboer, R Tarchini, M Fiers, H Sandbrink, RK Lankhorst, JM Vlak
    posted to dna genome sequence virus by plofje on 2006-11-01 12:59:15 as **
  • Complete genome sequence of Lactobacillus plantarum WCFS1.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1990-1995.
    by M Kleerebezem, J Boekhorst, R van Kranenburg, D Molenaar, OP Kuipers, R Leer, R Tarchini, SA Peters, HM Sandbrink, MW Fiers, W Stiekema, RM Lankhorst, PA Bron, SM Hoffer, MN Groot, R Kerkhoven, M de Vries, B Ursing, WM de Vos, RJ Siezen
    posted to genome lactobacillus sequence by plofje on 2006-11-01 12:59:07 as **
  • What drives plant stress genes?
    Trends Plant Sci, Vol. 8, No. 3. (March 2003), pp. 99-102.
    by MG Aarts, MW Fiers
    posted to plant stress by plofje on 2006-11-01 12:58:51 as **
  • Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines.
    BMC Bioinformatics, Vol. 5 (16 September 2004)
    by MW Fiers, GA Kleter, H Nijland, AA Peijnenburg, JP Nap, RC van Ham
    posted to allergenicity potential prediction by plofje on 2006-11-01 12:58:40 as **
  • Local coexpression domains of two to four genes in the genome of Arabidopsis.
    Plant Physiol, Vol. 138, No. 2. (June 2005), pp. 923-934.
    by XY Ren, MW Fiers, WJ Stiekema, JP Nap
    posted to arabidopsis coexpression by plofje on 2006-11-01 12:58:26 as **
  • PRECISE: software for prediction of cis-acting regulatory elements.
    J Hered, Vol. 96, No. 5. (t 2005), pp. 618-622.
    by LM Trindade, R van Berloo, M Fiers, RG Visser
    posted to elements prediction regulatory by plofje on 2006-11-01 12:58:14 as ** along with 1 person and 1 group indigoviolet EisenLab
  • DNAVis: interactive visualization of comparative genome annotations.
    Bioinformatics, Vol. 22, No. 3. (1 February 2006), pp. 354-355.
    by MW Fiers, H van de Wetering, TH Peeters, JJ van Wijk, JP Nap
    posted to annotation comparative genome visualization by plofje on 2006-11-01 12:57:52 as **
  • The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis
    New Phytologist, Vol. 170, No. 4. (June 2006), pp. 753-766.
    by Diana Rigola, Mark Fiers, Emanuela Vurro, Mark G Aarts
    posted to heavy-metal thlaspi by plofje on 2006-11-01 12:57:40 as **
  • In plants, highly expressed genes are the least compact.
    Trends Genet, Vol. 22, No. 10. (October 2006), pp. 528-532.
    by XY Ren, O Vorst, MW Fiers, WJ Stiekema, JP Nap
    posted to expression gene plant by plofje on 2006-11-01 12:55:31 as **
  • Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis.
    Genome Res (5 September 2006)
    by Eugene Berezikov, Geert van Tetering, Mark Verheul, Jose van de Belt, Linda van Laake, Joost Vos, Robert Verloop, Marc van de Wetering, Victor Guryev, Shuji Takada, Anton Jan van Zonneveld, Hiroyuki Mano, Ronald Plasterk, Edwin Cuppen
    posted to mirna rake by plofje on 2006-11-01 12:53:22 as **** along with 5 people and 1 group jfr mortenlindow andersbj mtagaya ilh microRNA
  • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.
    Genome Res (5 September 2006)
    by Cheng Lu, Karthik Kulkarni, Frédéric F F Souret, Ramesh Muthuvalliappan, Shivakundan Singh S Tej, R Scott S Poethig, Ian R R Henderson, Steven E E Jacobsen, Wenzhong Wang, Pamela J J Green, Blake C C Meyers
    posted to arabidopsis mirna mutant rdrp by plofje on 2006-11-01 12:52:36 as ***** along with 4 people and 2 groups tardigrade mortenlindow andersbj cdawson microRNA GIG
  • Origins and impact of constraints in evolution of gene families.
    Genome Res (19 October 2006)
    by Boris E E Shakhnovich, Eugene V V Koonin
    posted to evolution family gene by plofje on 2006-11-01 12:51:11 as ** along with 1 person BioNica
  • Community annotation: Procedures, protocols, and supporting tools.
    Genome Res (25 October 2006)
    by Christine G G Elsik, Kim C C Worley, Lan Zhang, Natalia V V Milshina, Huaiyang Jiang, Justin T T Reese, Kevin L L Childs, Anand Venkatraman, C Michael M Dickens, George M M Weinstock, Richard A A Gibbs
    posted to annotation community genome by plofje on 2006-11-01 12:47:00 as **** along with 2 people and 1 group indigoviolet brant EisenLab
  • Prediction of trans-antisense transcripts in Arabidopsis thaliana
    Genome Biology, Vol. 7 (13 October 2006), R92.
    by Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
    posted to antisense arabidopsis trans transcripts by plofje on 2006-11-01 12:18:34 as ** along with 2 people and 1 group cdawson dandaman GIG
  • Gene function classification using Bayesian models with hierarchy-based priors
    BMC Bioinformatics, Vol. 7 (12 October 2006), 448.
    by Babak Shahbaba, Radford M Neal
    posted to bayesian function gene by plofje on 2006-11-01 12:06:45 as ** along with 1 person bayes
  • Genepi: a blackboard framework for genome annotation
    BMC Bioinformatics, Vol. 7 (12 October 2006), 450.
    by Stephane Descorps-Declere, Danielle Ziebelin, Francois Rechenmann, Alain Viari
    posted to annotation genome by plofje on 2006-11-01 12:06:13 as **
  • Imagene: an integrated computer environment for sequence annotation and analysis.
    Bioinformatics, Vol. 15, No. 1. (January 1999), pp. 2-15.
    by C Médigue, F Rechenmann, A Danchin, A Viari
    posted to annotation automated pipeline by plofje on 2006-11-01 11:25:21 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • The accuracy of several multiple sequence alignment programs for proteins
    BMC Bioinformatics, Vol. 7 (24 October 2006), 471.
    by Paulo AS Nuin, Zhuozhi Wang, Elisabeth RM Tillier
    posted to alignment multiple protein sequence by plofje on 2006-11-01 11:09:52 as ** along with 2 people tny rabio
  • CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes
    BMC Bioinformatics, Vol. 7 (24 October 2006), 472.
    by Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
    posted to analysis comparative genome visualization by plofje on 2006-11-01 11:08:49 as **
  • Bayesian search of functionally divergent protein subgroups and their function specific residues.
    Bioinformatics (26 July 2006)
    by Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm
    posted to bayesian function prediction by plofje on 2006-11-01 11:05:42 as ** along with 2 people Terkko wnpx
  • Prediction of mRNA polyadenylation sites by support vector machine.
    Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2320-2325.
    by Y Cheng, RM Miura, B Tian
    posted to mrna polya svn by plofje on 2006-11-01 11:05:24 as **
  • PYCHEM: a multivariate analysis package for python.
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2565-2566.
    by RM Jarvis, D Broadhurst, H Johnson, NM O'Boyle, R Goodacre
    posted to analysis python statistics by plofje on 2006-11-01 11:00:06 as **
  • Mining frequent stem patterns from unaligned RNA sequences.
    Bioinformatics (14 August 2006)
    by Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
    posted to pattern rna stem by plofje on 2006-11-01 10:58:29 as ** along with 5 people and 3 groups marcius tardigrade andersbj samal dquest microRNA BioinfoCIPF SGU-CIPF
  • Robust method for detecting differential gene expression in twin studies.
    Bioinformatics (10 October 2006)
    by Alexander Begun
    posted to differential expression gene twin by plofje on 2006-11-01 10:57:04 as ** along with 2 people klo shigepong
  • Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Bioinformatics (10 October 2006)
    by Nora Pierstorff, Casey M M Bergman, Thomas Wiehe
    posted to comparative dna motif regulatory by plofje on 2006-11-01 10:56:44 as ** along with 3 people and 1 group dpollard SeungjoonOh csdhwang EisenLab
  • KGraph: a system for visualizing and evaluating complex genetic associations.
    Bioinformatics (10 October 2006)
    by Reagan J J Kelly, Douglas M M Jacobsen, Yan V V Sun, Jennifer A A Smith, Sharon L R L Kardia
    posted to association genetic visualization by plofje on 2006-11-01 10:55:03 as ** along with 2 people Ayest maralena
  • Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs.
    Bioinformatics (10 August 2006)
    by Yu Wang, Tobias Hindemitt, Klaus F X F Mayer
    posted to arabidopsis mirna promoter by plofje on 2006-11-01 10:42:24 as ** along with 2 people and 1 group tardigrade andersbj microRNA
  • MMM: a sequence-to-structure alignment protocol.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2691-2692.
    by BK Rai, CJ Madrid-Aliste, JE Fajardo, A Fiser
    posted to alignment sequence structure by plofje on 2006-11-01 10:42:02 as **
  • iFold: a platform for interactive folding simulations of proteins.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694.
    by S Sharma, F Ding, H Nie, D Watson, A Unnithan, J Lopp, D Pozefsky, NV Dokholyan
    posted to folding protein by plofje on 2006-11-01 10:40:50 as ** along with 1 person and 8 groups shantanu structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
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