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paulschlesingers Beobachtungsliste [1000+ articles]

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  • Chemically Induced Phospholipid Translocation Across Biological Membranes
    Langmuir, Vol. 24, No. 17. (2008), pp. 9656-9660.
    by Andrey A Gurtovenko, Olajide I Onike, Jamshed Anwar
    posted to ligand-membraneinteractions biomembranes by sobolevnrm on 2008-09-04 14:04:28 as read
  • PET/MRI Dual-Modality Tumor Imaging Using Arginine-Glycine-Aspartic (RGD)-Conjugated Radiolabeled Iron Oxide Nanoparticles
    Journal of Nuclear Medicine, Vol. 49, No. 8. (2008), pp. 1371-1379.
    by Ha Y Lee, Zibo Li, Kai Chen, Andrew R Hsu, Chenjie Xu, Jin Xie, Shouheng Sun, Xiaoyuan Chen
    posted to nanotech imaging by sobolevnrm on 2008-09-04 14:04:28 as read
  • Highly Efficient Drug Delivery with Gold Nanoparticle Vectors for in Vivo Photodynamic Therapy of Cancer
    Journal of the American Chemical Society, Vol. 130, No. 32. (2008), pp. 10643-10647.
    by Yu Cheng, Anna C Samia, Joseph D Meyers, Irene Panagopoulos, Baowei Fei, Clemens Burda
    posted to nanotech drugdelivery cancer by sobolevnrm on 2008-09-04 14:04:28 as read
  • Superparamagnetic Iron Oxide Nanoparticle-Aptamer Bioconjugates for Combined Prostate Cancer Imaging and Therapy
    ChemMedChem (in press)
    by Andrew Z Wang, Vaishali Bagalkot, Christophoros C Vasilliou, Frank Gu, Frank Alexis, Liangfang Zhang, Mariam Shaikh, Kai Yuet, Michael J Cima, Robert Langer, Philip W Kantoff, Neil H Bander, Sangyong Jon, Omid C Farokhzad
    posted to nanotech imaging drugdelivery ccne cancer by sobolevnrm on 2008-09-04 14:04:28 as read
  • Gene Ontology term overlap as a measure of gene functional similarity
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Meeta Mistry, Paul Pavlidis
    posted to ontology bioinformatics by sobolevnrm on 2008-09-04 14:04:28 as read
  • Modeling transmembrane transport through cell membrane wounds created by acoustic cavitation
    Biophysical Journal (in press)
    by Vladimir G Zarnitsyn, Christina A Rostad, Mark R Prausnitz
    posted to ultrasound diffusion biomembranes by sobolevnrm on 2008-09-04 14:04:28 as read
  • Electrostatic Interactions Guide the Active Site Face of a Structure-Specific Ribonuclease to Its RNA Substrate
    Biochemistry, Vol. 47, No. 34. (2008), pp. 8912-8918.
    by Matthew J Plantinga, Alexei V Korennykh, Joseph A Piccirilli, Carl C Correll
    posted to protein-nucleicacidinteractions nucleicacids electrostatics by sobolevnrm on 2008-09-04 14:04:28 as read
  • Insights into protein flexibility: The relationship between normal modes and conformational change upon protein–protein docking
    Proceedings of the National Academy of Sciences, Vol. 105, No. 30. (2008), pp. 10390-10395.
    by Sara E Dobbins, Victor I Lesk, Michael JE Sternberg
    posted to quasiharmonicmodels protein-proteininteractions by sobolevnrm on 2008-09-04 14:04:28 as read
  • Application of a polarizable force field to calculations of relative protein–ligand binding affinities
    Proceedings of the National Academy of Sciences, Vol. 105, No. 30. (2008), pp. 10378-10383.
    by Oleg Khoruzhii, Alexander G Donchev, Nikolay Galkin, Alexei Illarionov, Mikhail Olevanov, Vladimir Ozrin, Cary Queen, Vladimir Tarasov
    posted to protein-ligandinteractions molecularsimulation electrostatics by sobolevnrm on 2008-09-04 14:04:28 as read
  • Very fast prediction and rationalization of p$K_a$ values for protein-ligand complexes
    Proteins: Structure, Function, and Bioinformatics (in press)
    by Delphine C Bas, David M Rogers, Jan H Jensen
    posted to solvation software pka electrostatics bioinformatics by sobolevnrm on 2008-09-03 13:35:31 as read
  • Classical and Quantum Gibbs Free Energies and Phase Behavior of Water Using Simulation and Cell Theory
    Journal of Physical Chemistry B, Vol. 112, No. 32. (2008), pp. 9769-9776.
    by Martin K Stennett, Richard H Henchman
    posted to statisticalmechanics solvation quasiharmonicmodels by sobolevnrm on 2008-09-03 13:35:31 as read
  • Assessing Atomistic and Coarse-Grained Force Fields for Protein−Lipid Interactions: the Formidable Challenge of an Ionizable Side Chain in a Membrane
    Journal of Physical Chemistry B, Vol. 112, No. 32. (2008), pp. 9588-9602.
    by Igor Vorobyov, Libo Li, Toby W Allen
    posted to protein-membraneinteractions multiscale biomembranes by sobolevnrm on 2008-09-03 13:35:31 as read
  • Modeling Charged Protein Side Chains in Lipid Membranes
    Journal of General Physiology, Vol. 130, No. 2. (2007), pp. 237-240.
    by Toby W Allen
    posted to solvation pka biomembranes by sobolevnrm on 2008-09-03 13:35:31 as read
  • Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions
    Protein Science, Vol. 16, No. 12. (2007), pp. 2694-2702.
    by Katrina L Schweiker, Arash Z Afsar, Alan R Davidson, George I Makhatadze
    posted to proteinfolding proteinengineering electrostatics by sobolevnrm on 2008-09-03 13:35:31 as read
  • FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule Simulation
    Computer-Aided Design of Integrated Circuits and Systems, IEEE Transactions on, Vol. 25, No. 2. (2006), pp. 274-284.
    by MD Altman, JP Bardhan, B Tidor, JK White
    posted to software mathematics electrostatics by sobolevnrm on 2008-09-03 13:35:31 as read
  • Grasping molecular structures through publication-integrated 3D models
    Trends in Biochemical Sciences, Vol. 33, No. 9. (2008), pp. 408-412.
    by Pravin Kumar, Alexander Ziegler, Julian Ziegler, Barbara U Ziegler, Andreas Ziegler
    posted to visualization structure by sobolevnrm on 2008-09-03 13:35:31 as read
  • Permeation of water through the KcsA K$^+$ channel
    Proteins: Structure, Function, and Bioinformatics (in press)
    by Simone Furini, Oliver Beckstein, Carmen Domene
    posted to ionchannels biomembranes by sobolevnrm on 2008-09-02 12:34:12 as **
  • Transport phenomena in nanofluidics
    Reviews of Modern Physics, Vol. 80, No. 3. (2008)
    by Reto B Schoch, Jongyoon Han, Philippe Renaud
    posted to review nanotech fluidmechanics electrostatics diffusion by sobolevnrm on 2008-09-02 12:34:12 as **
  • Conformational Changes of Melittin upon Insertion into Phospholipid Monolayer and Vesicle
    Journal of Biochemistry, Vol. 116, No. 3. (1994), pp. 482-487.
    by Sen F Sui, Hua Wu, Yong Guo, Kai S Chen
    posted to protein-membraneinteractions biomembranes by sobolevnrm on 2008-09-02 12:34:12 as **
  • The importance of stupidity in scientific research
    Journal of Cell Science, Vol. 121, No. 11. (2008)
    by Martin A Schwartz
    posted to teaching misc career by sobolevnrm on 2008-09-02 12:34:11 as **
  • Thermodynamic Origin of Hofmeister Ion Effects
    Journal of Physical Chemistry B, Vol. 112, No. 31. (2008), pp. 9428-9436.
    by Laurel M Pegram, Thomas M Record
    posted to solvation nonpolar electrostatics by sobolevnrm on 2008-09-02 12:34:11 as **
  • Pairwise-additive hydrophobic effect for alkanes in water
    Proceedings of the National Academy of Sciences, Vol. 105, No. 28. (2008), pp. 9512-9515.
    by Jianzhong Wu, John M Prausnitz
    posted to solvation nonpolar by sobolevnrm on 2008-09-02 12:34:11 as **
  • Enhancing synchronizability of weighted dynamical networks using betweenness centrality
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 78, No. 1. (2008)
    by Mahdi Jalili, Ali A Rad, Martin Hasler
    posted to mathematics graphtheory by sobolevnrm on 2008-09-02 12:34:11 as **
  • The solution to an inverse problem in stratified dielectric media
    Journal of Mathematical Physics, Vol. 17, No. 7. (1976), pp. 1099-1104.
    by B Gopinath
    posted to mathematics electrostatics biomembranes by sobolevnrm on 2008-09-02 12:34:10 as **
  • ISIM: A Program for Grand Canonical Monte Carlo Simulations of the Ionic Environment of Biomolecules
    Molecular Simulation, Vol. 30, No. 1. (2004), pp. 45-61.
    by A Vitalis, NA Baker, JA Mccammon
    posted to statisticalmechanics software moleculardynamics electrostatics beyondmeanfield by sobolevnrm on 2008-09-02 12:34:10 as **
  • Electrostatic Contributions to the Stability of the GCN4 Leucine Zipper Structure
    Journal of Molecular Biology, Vol. 374, No. 1. (2007), pp. 206-19.
    by William M Matousek, Barbara Ciani, Carolyn A Fitch, Bertrand, Richard A Kammerer, Andrei T Alexandrescu
    posted to solvation pka electrostatics by sobolevnrm on 2008-09-02 12:34:10 as read
  • Molecular mechanics PBSA ligand binding energy and interaction of Efavirenz derivatives with HIV-1 reverse transcriptase
    Journal of Enzyme Inhibition and Medicinal Chemistry, Vol. 20, No. 2. (2005), pp. 129-134.
    by Philip Weinzinger, Sup Hannongbua, Pete Wolschann
    posted to solvation protein-ligandinteractions electrostatics by sobolevnrm on 2008-09-02 12:34:10 as **
  • Estimation of Subspace Arrangements with Applications in Modeling and Segmenting Mixed Data
    SIAM Review, Vol. 50, No. 3. (2008), pp. 413-458.
    by Yi Ma, Allen Y Yang, Harm Derksen, Robert Fossum
    posted to quasiharmonicmodels mathematics clustering by sobolevnrm on 2008-09-02 12:34:10 as **
  • Topologically Based Multipolar Reconstruction of Electrostatic Interactions in Multiscale Simulations of Proteins
    Journal of Chemical Theory and Computation, Vol. 4, No. 8. (2008), pp. 1378-1385.
    by Michele Cascella, Marilisa A Neri, Paolo Carloni, Matteo D Peraro
    posted to multiscale electrostatics by sobolevnrm on 2008-09-02 12:34:09 as **
  • Poly(amidoamine) Dendrimers on Lipid Bilayers II: Effects of Bilayer Phase and Dendrimer Termination
    Journal of Physical Chemistry B, Vol. 112, No. 31. (2008), pp. 9346-9353.
    by Christopher V Kelly, Pascale R Leroueil, Bradford G Orr, Mark, Ioan Andricioaei
    posted to nanotech moleculardynamics biomembranes by sobolevnrm on 2008-09-02 12:34:09 as **
  • Poly(amidoamine) Dendrimers on Lipid Bilayers I: Free Energy and Conformation of Binding
    Journal of Physical Chemistry B, Vol. 112, No. 31. (2008), pp. 9337-9345.
    by Christopher V Kelly, Pascale R Leroueil, Elizabeth K Nett, Jeffery M Wereszczynski, James R Baker, Bradford G Orr, Mark, Ioan Andricioaei
    posted to nanotech moleculardynamics biomembranes by sobolevnrm on 2008-09-02 12:34:09 as **
  • Seeking a New Biology through Text Mining
    Cell, Vol. 134, No. 1. (2008), pp. 9-13.
    by Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein
    posted to review bioinformatics by sobolevnrm on 2008-09-02 12:34:09 as **
  • Electrostatics-defying interaction between arginine termini as a thermodynamic driving force in protein-protein interaction
    Proteins: Structure, Function, and Bioinformatics (in press)
    by Deepa Pednekar, Abhijit Tendulkar, Susheel Durani
    posted to protein-proteininteractions pka electrostatics by sobolevnrm on 2008-09-02 12:34:08 as **
  • Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis
    Proteins: Structure, Function, and Bioinformatics (in press)
    by Yifei Kong, Martin Karplus
    posted to quasiharmonicmodels correlatedmutations allostery by sobolevnrm on 2008-09-02 12:34:08 as **
  • Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
    Nucleic Acids Research, Vol. 36, No. 12. (2008), pp. 4118-4127.
    by Isabelle Bonnet, Andreas Biebricher, Pierre L Porte, Claude Loverdo, Olivier Benichou, Raphael Voituriez, Christophe Escude, Wolfgang Wende, Alfred Pingoud, Pierre Desbiolles
    posted to protein-nucleicacidinteractions nucleicacids diffusion by sobolevnrm on 2008-09-02 12:34:08 as **
  • Solvent-Solute Interactions in Hydrofluoroalkane Propellants
    Journal of Physical Chemistry B, Vol. 112, No. 27. (2008), pp. 8084-8094.
    by Robson PS Peguin, Sandro RP da Rocha
    posted to perfluorocarbons by sobolevnrm on 2008-09-02 12:34:07 as **
  • Magnetic Nanoparticle-Peptide Conjugates for in Vitro and in Vivo Targeting and Extraction of Cancer Cells
    Journal of the American Chemical Society, Vol. 130, No. 31. (2008)
    by Kenneth E Scarberry, Erin B Dickerson, John F Mcdonald, John Z Zhang
    posted to cancer ccne nanotech by sobolevnrm on 2008-08-29 13:42:15 as **
  • Biomolecular Engineering by Combinatorial Design and High-Throughput Screening: Small, Soluble Peptides That Permeabilize Membranes
    Journal of the American Chemical Society, Vol. 130, No. 30. (2008)
    by Ramesh Rathinakumar, William C Wimley
    posted to biomembranes proteinengineering protein-membraneinteractions by sobolevnrm on 2008-08-29 13:42:15 as **
  • notes Biochemical systems analysis : a study of function and design in molecular biology
    (1976)
    by Michael A Savageau
    posted to review systemsbiology by sobolevnrm on 2008-08-29 13:42:15 as **
  • notes Computational Analysis of Biochemical Systems
    (2000)
    by EO Voit
    posted to review systemsbiology by sobolevnrm on 2008-08-29 13:42:15 as **
  • An introduction to the bootstrap
    (1998)
    by B Efron, RJ Tibshirani
    posted to mathematics statistics by sobolevnrm on 2008-08-29 13:42:13 as **
  • notes Electric Double Layers with Electrolyte Mixtures: Integral Equations Theories and Simulations
    Journal of Physical Chemistry B, Vol. 110, No. 3. (2006)
    by A Martín-Molina, M Quesada-Pérez, R Hidalgo-Álvarez
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:13 as **
  • notes “Like-Charge Attraction” between Anionic Polyelectrolytes: Molecular Dynamics Simulations
    Langmuir, Vol. 21, No. 2. (2005)
    by F Molnar, J Rieger
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:13 as **
  • notes Activity coefficients of electrolyte solutions in the modified mean spherical approximation
    Physica A, Vol. 323 (2004)
    by LM Varela, M Garcia, V Mosquera
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:13 as **
  • The role of image charges in the interactions between colloidal particles
    Soft Matter, Vol. 4 (2008)
    by MM Hatlo, L Lue
    posted to beyondmeanfield electrostatics solvation statisticalmechanics by sobolevnrm on 2008-08-29 13:42:12 as **
  • The Poisson-Boltzmann equation and its application to polyelectrolytes
    Journal of Chemical Physics, Vol. 70, No. 11. (1979)
    by M Fixman
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:12 as **
  • Evaluation of Ion Binding to DNA Duplexes Using a Size-Modified Poisson-Boltzmann Theory
    Biophysical Journal, Vol. 93, No. 9. (2007)
    by VB Chu, Y Bai, J Lipfert, D Herschlag
    posted to beyondmeanfield electrostatics solvation statisticalmechanics by sobolevnrm on 2008-08-29 13:42:12 as **
  • The influence of zwitterionic lipids on the electrostatic adsorption of macroions onto mixed lipid membranes
    Journal of Chemical Physics, Vol. 127, No. 21. (2007)
    by Andrew Haugen, Sylvio May
    posted to beyondmeanfield biomembranes electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:12 as **
  • The ionic correlation contribution to the free energy of spherical double layers
    The Journal of Chemical Physics, Vol. 89, No. 8. (1988)
    by Clifford E Woodward, Bo Jönsson, Torbjörn Kesson
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:12 as **
  • The cell model for polyelectrolyte systems. Exact statistical mechanical relations, Monte Carlo simulations, and the Poisson--Boltzmann approximation
    Journal of Chemical Physics, Vol. 76, No. 9. (1982)
    by H Wennerstrom, B Jonsson, P Linse
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:12 as **
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