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operons Chen [14 articles]

Recent papers posted to operons library by the author Chen. You can also see everyones Chen.
  • Adaptive genic evolution in the Drosophila genomes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 7. (13 February 2007), pp. 2271-2276.
    by JA Shapiro, W Huang, C Zhang, MJ Hubisz, J Lu, DA Turissini, S Fang, HY Wang, RR Hudson, R Nielsen, Z Chen, CI Wu
    posted to transposon genomics doctorate by operon on 2008-05-13 14:45:38 as ** along with 1 person skumagai
  • CodonO: codon usage bias analysis within and across genomes.
    Nucleic Acids Res (30 May 2007)
    by Michael C C Angellotti, Shafquat B B Bhuiyan, Guorong Chen, Xiu-Feng F Wan
    posted to master by operon on 2008-04-17 04:42:59 as ** along with 2 people and 1 group saunders papamicd Bioinformatics
  • Model for the distributions of k-mers in DNA sequences.
    Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 72, No. 1 Pt 1. (July 2005)
    by YH Chen, SL Nyeo, CY Yeh
    posted to genometrics master by operon on 2008-04-12 23:56:54 as **
  • Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.
    by S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, K Thornton, MJ Hubisz, R Chen, RP Meisel, O Couronne, S Hua, MA Smith, P Zhang, J Liu, HJ Bussemaker, MF van Batenburg, SL Howells, SE Scherer, E Sodergren, BB Matthews, MA Crosby, AJ Schroeder, D Ortiz-Barrientos, CM Rives, ML Metzker, DM Muzny, G Scott, D Steffen, DA Wheeler, KC Worley, P Havlak, KJ Durbin, A Egan, R Gill, J Hume, MB Morgan, G Miner, C Hamilton, Y Huang, L Waldron, D Verduzco, KP Clerc-Blankenburg, I Dubchak, MA Noor, W Anderson, KP White, AG Clark, SW Schaeffer, W Gelbart, GM Weinstock, RA Gibbs
    posted to doctorate by operon on 2008-04-09 05:49:11 as ** along with 8 people and 3 groups skumagai briann tsackton jshapiro indigoviolet penka adepace cisevol EisenLab Nie cis-regulatory-evolution
  • The genome of the model beetle and pest Tribolium castaneum.
    Nature (23 March 2008)
    by , , Stephen Richards, , Richard A A Gibbs, George M M Weinstock, , Susan J J Brown, Robin Denell, Richard W W Beeman, Richard Gibbs, , Richard W W Beeman, Susan J J Brown, Gregor Bucher, Markus Friedrich, Cornelis J P J Grimmelikhuijzen, Martin Klingler, Marce Lorenzen, Stephen Richards, Siegfried Roth, Reinhard Schröder, Diethard Tautz, Evgeny M M Zdobnov, , Donna Muzny, Richard A A Gibbs, George M M Weinstock, Tony Attaway, Stephanie Bell, Christian J J Buhay, Mimi N N Chandrabose, Dean Chavez, Kerstin P P Clerk-Blankenburg, Andrew Cree, Marvin Dao, Clay Davis, Joseph Chacko, Huyen Dinh, Shannon Dugan-Rocha, Gerald Fowler, Toni T T Garner, Jeffrey Garnes, Andreas Gnirke, Alica Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N N Jhangiani, Vandita Joshi, Ziad Mohid M Khan, Laronda Jackson, Christie Kovar, Andrea Kowis, Sandra Lee, Lora R R Lewis, Jon Margolis, Margaret Morgan, Lynne V V Nazareth, Ngoc Nguyen, Geoffrey Okwuonu, David Parker, Stephen Richards, San-Juana J Ruiz, Jireh Santibanez, Joël Savard, Steven E E Scherer, Brian Schneider, Erica Sodergren, Diethard Tautz, Selina Vattahil, Donna Villasana, Courtney S S White, Rita Wright, , Yoonseong Park, Richard W W Beeman, Jeff Lord, Brenda Oppert, Marce Lorenzen, Susan Brown, Liangjiang Wang, Joël Savard, Diethard Tautz, Stephen Richards, George Weinstock, Richard A A Gibbs, , Yue Liu, Kim Worley, George Weinstock, , Christine G G Elsik, Justin T T Reese, Eran Elhaik, Giddy Landan, Dan Graur, , Peter Arensburger, Peter Atkinson, Richard W W Beeman, Jim Beidler, Susan J J Brown, Jeffery P P Demuth, Douglas W W Drury, Yu-Zhou Z Du, Haruhiko Fujiwara, Marce Lorenzen, Vincenza Maselli, Mizuko Osanai, Yoonseong Park, Hugh M M Robertson, Zhijian Tu, Jian-Jun J Wang, Suzhi Wang, , Stephen Richards, Henry Song, Lan Zhang, Erica Sodergren, Doreen Werner, Mario Stanke, Burkhard Morgenstern, Victor Solovyev, Peter Kosarev, Garth Brown, Hsiu-Chuan C Chen, Olga Ermolaeva, Wratko Hlavina, Yuri Kapustin, Boris Kiryutin, Paul Kitts, Donna Maglott, Kim Pruitt, Victor Sapojnikov, Alexandre Souvorov, Aaron J J Mackey, Robert M M Waterhouse, Stefan Wyder, Evgeny M M Zdobnov, , Evgeny M M Zdobnov, Stefan Wyder, Evgenia V V Kriventseva, Tatsuhiko Kadowaki, Peer Bork, , Manuel Aranda, Riyue Bao, Anke Beermann, Nicola Berns, Renata Bolognesi, François Bonneton, Daniel Bopp, Susan J J Brown, Gregor Bucher, Thomas Butts, Arnaud Chaumot, Robin E E Denell, David E K E Ferrier, Markus Friedrich, Cassondra M M Gordon, Marek Jindra, Martin Klingler, Que Lan, H Michael G M Lattorff, Vincent Laudet, Cornelia von Levetsow, Zhenyi Liu, Rebekka Lutz, Jeremy A A Lynch, Rodrigo Nunes N da Fonseca, Nico Posnien, Rolf Reuter, Siegfried Roth, Joël Savard, Johannes B B Schinko, Christian Schmitt, Michael Schoppmeier, Reinhard Schröder, Teresa D D Shippy, Franck Simonnet, Henrique Marques-Souza, Diethard Tautz, Yoshinori Tomoyasu, Jochen Trauner, Maurijn Van der Zee, Michel Vervoort, Nadine Wittkopp, Ernst A A Wimmer, Xiaoyun Yang, , Andrew K K Jones, David B B Sattelle, , Paul R R Ebert, , David Nelson, Jeffrey G G Scott, Richard W W Beeman, , Subbaratnam Muthukrishnan, Karl J J Kramer, Yasuyuki Arakane, Richard W W Beeman, Qingsong Zhu, David Hogenkamp, Radhika Dixit, , Brenda Oppert, Haobo Jiang, Zhen Zou, Jeremy Marshall, Elena Elpidina, Konstantin Vinokurov, Cris Oppert, , Zhen Zou, Jay Evans, Zhiqiang Lu, Picheng Zhao, Niranji Sumathipala, Boran Altincicek, Andreas Vilcinskas, Michael Williams, Dan Hultmark, Charles Hetru, Haobo Jiang, , Cornelis J P J Grimmelikhuijzen, Frank Hauser, Giuseppe Cazzamali, Michael Williamson, Yoonseong Park, Bin Li, Yoshiaki Tanaka, Reinhard Predel, Susanne Neupert, Joachim Schachtner, Peter Verleyen, , Florian Raible, Peer Bork, , Markus Friedrich, , Kimberly K O K Walden, Hugh M M Robertson, , Sergio Angeli, Sylvain Forêt, Gregor Bucher, Stefan Schuetz, Ryszard Maleszka, Ernst A A Wimmer, , Richard W W Beeman, Marce Lorenzen, , Yoshinori Tomoyasu, Sherry C C Miller, Daniela Grossmann, Gregor Bucher
    posted to doctorate by operon on 2008-04-09 05:48:08 as ** along with 1 person cmzmasek
  • Protein stability imposes limits on organism complexity and speed of molecular evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16152-16157.
    by Konstantin B Zeldovich, Peiqiu Chen, Eugene I Shakhnovich
    posted to master reduction by operon on 2008-03-30 15:11:44 as ***** along with 4 people penka cjeans cactus cdeane
  • Codon usage between genomes is constrained by genome-wide mutational processes
    PNAS, Vol. 101, No. 10. (9 March 2004), pp. 3480-3485.
    by Swaine L Chen, William Lee, Alison K Hottes, Lucy Shapiro, Harley H Mcadams
    posted to codon_bias master by operon on 2008-03-29 21:23:57 as ** along with 2 people and 1 group azazello wenhan MBLAB
  • Mycoplasmas regulate the expression of heat-shock protein genes through CIRCE-HrcA interactions.
    Biochem Biophys Res Commun, Vol. 367, No. 1. (29 February 2008), pp. 213-218.
    by LJ Chang, WH Chen, FC Minion, D Shiuan
    posted to master mycoplasma by operon on 2008-03-17 23:05:32 as **
  • In vivo molecular evolution reveals biophysical origins of organismal fitness.
    Mol Cell, Vol. 22, No. 4. (19 May 2006), pp. 441-449.
    by R Couñago, S Chen, Y Shamoo
    posted to biophysics master by operon on 2008-03-16 15:28:41 as ** along with 2 people dayjm chenlc03
  • NOTUNG: a program for dating gene duplications and optimizing gene family trees.
    J Comput Biol, Vol. 7, No. 3-4. (2000), pp. 429-447.
    by K Chen, D Durand, M Farach-Colton
    posted to evolution master by operon on 2008-03-10 02:35:37 as **
  • Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus.
    PLoS Genet, Vol. 3, No. 12. (21 December 2007)
    by Gregory C C Kettler, Adam C C Martiny, Katherine Huang, Jeremy Zucker, Maureen L L Coleman, Sebastien Rodrigue, Feng Chen, Alla Lapidus, Steven Ferriera, Justin Johnson, Claudia Steglich, George M M Church, Paul Richardson, Sallie W W Chisholm
    posted to master reduction by operon on 2008-03-10 02:30:37 as ** along with 2 people JeremyZucker jmeppley
  • OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by F Chen, AJ Mackey, CJ Stoeckert, DS Roos
    posted to master by operon on 2008-03-10 01:32:30 as ** along with 2 people ninch maximilianh
  • The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
    Science, Vol. 318, No. 5848. (12 October 2007), pp. 245-250.
    by Sabeeha S Merchant, Simon E Prochnik, Olivier Vallon, Elizabeth H Harris, Steven J Karpowicz, George B Witman, Astrid Terry, Asaf Salamov, Lillian K Fritz-Laylin, Laurence Marechal-Drouard, Wallace F Marshall, Liang-Hu Qu, David R Nelson, Anton A Sanderfoot, Martin H Spalding, Vladimir V Kapitonov, Qinghu Ren, Patrick Ferris, Erika Lindquist, Harris Shapiro, Susan M Lucas, Jane Grimwood, Jeremy Schmutz, Pierre Cardol, Heriberto Cerutti, Guillaume Chanfreau, Chun-Long Chen, Valerie Cognat, Martin T Croft, Rachel Dent, Susan Dutcher, Emilio Fernandez, Hideya Fukuzawa, David Gonzalez-Ballester, Diego Gonzalez-Halphen, Armin Hallmann, Marc Hanikenne, Michael Hippler, William Inwood, Kamel Jabbari, Ming Kalanon, Richard Kuras, Paul A Lefebvre, Stephane D Lemaire, Alexey V Lobanov, Martin Lohr, Andrea Manuell, Iris Meier, Laurens Mets, Maria Mittag, Telsa Mittelmeier, James V Moroney, Jeffrey Moseley, Carolyn Napoli, Aurora M Nedelcu, Krishna Niyogi, Sergey V Novoselov, Ian T Paulsen, Greg Pazour, Saul Purton, Jean-Philippe Ral, Diego M Riano-Pachon, Wayne Riekhof, Linda Rymarquis, Michael Schroda, David Stern, James Umen, Robert Willows, Nedra Wilson, Sara L Zimmer, Jens Allmer, Janneke Balk, Katerina Bisova, Chong-Jian Chen, Marek Elias, Karla Gendler, Charles Hauser, Mary R Lamb, Heidi Ledford, Joanne C Long, Jun Minagawa, Dudley M Page, Junmin Pan, Wirulda Pootakham, Sanja Roje, Annkatrin Rose, Eric Stahlberg, Aimee M Terauchi, Pinfen Yang, Steven Ball, Chris Bowler, Carol L Dieckmann, Vadim N Gladyshev, Pamela Green, Richard Jorgensen, Stephen Mayfield, Bernd Mueller-Roeber, Sathish Rajamani, Richard T Sayre, Peter Brokstein, Inna Dubchak, David Goodstein, Leila Hornick, Wayne Y Huang, Jinal Jhaveri, Yigong Luo, Diego Martinez, Wing C Ngau, Bobby Otillar, Alexander Poliakov, Aaron Porter, Lukasz Szajkowski, Gregory Werner, Kemin Zhou, Igor V Grigoriev, Daniel S Rokhsar, Arthur R Grossman
    posted to evolution genomics master by operon on 2008-02-04 13:55:25 as ** along with 5 people JeremyZucker tharris dragonrez zwang dandaman
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
    posted to eukaryotic evolution optimization ortholog phylogenetics by operon on 2007-07-23 20:37:13 as ***** along with 9 people and 3 groups bpcusack cerca natstreet icases rvosa indigoviolet stajich cjeans winterschlaefer EisenLab FAB-lab TNT
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