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nklees library [271 articles]

Neue Artikel in nklees Bibliothek.
  • Statistics review 1: presenting and summarising data.
    Crit Care, Vol. 6, No. 1. (February 2002), pp. 66-71.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:32:05 as ** along with 1 person jyuh
  • Statistics review 2: samples and populations.
    Crit Care, Vol. 6, No. 2. (April 2002), pp. 143-148.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:34 as ** along with 1 person jyuh
  • Statistics review 3: hypothesis testing and P values.
    Crit Care, Vol. 6, No. 3. (June 2002), pp. 222-225.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:12 as ** along with 1 person jyuh
  • Statistics review 4: sample size calculations.
    Crit Care, Vol. 6, No. 4. (August 2002), pp. 335-341.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:27:57 as ** along with 1 person jyuh
  • Statistics review 2: Samples and populations
    Critical Care, Vol. 7, No. 1. (2003)
    by Elise Whitley, Jonathan Ball
    posted to statistics by nklee on 2008-05-09 03:27:10 as **
  • Statistics review 9: one-way analysis of variance.
    Crit Care, Vol. 8, No. 2. (April 2004), pp. 130-136.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:26:23 as ** along with 1 person jyuh
  • Statistics review 10: further nonparametric methods.
    Crit Care, Vol. 8, No. 3. (June 2004), pp. 196-199.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:25:29 as ** along with 1 person jyuh
  • Statistics review 11: assessing risk.
    Crit Care, Vol. 8, No. 4. (August 2004), pp. 287-291.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:24:43 as ** along with 1 person jyuh
  • Statistics review 12: survival analysis.
    Crit Care, Vol. 8, No. 5. (October 2004), pp. 389-394.
    by V Bewick, L Cheek, J Ball
    posted to statistical by nklee on 2008-05-09 03:24:19 as ** along with 1 person jyuh
  • Statistics review 14: Logistic regression.
    Crit Care, Vol. 9, No. 1. (February 2005), pp. 112-118.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:23:45 as ** along with 2 people jyuh hpiwowar
  • Statistics review 13: receiver operating characteristic curves.
    Crit Care, Vol. 8, No. 6. (December 2004), pp. 508-512.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:21:51 as ** along with 1 person and 1 group jyuh Motif Discovery
  • Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.
    Genome Biol, Vol. 6, No. 2. (2005)
    by O Elemento, S Tavazoie
    posted to genomic comprative by nklee on 2008-05-09 01:08:22 as ** along with 2 people and 2 groups indigoviolet grahamc EisenLab ParkinsonLab_at_MaRS
  • Analyzing Protein-DNA Recognition Mechanisms
    Structure, Vol. 12, No. 1. (16 March 2004), pp. 113-122.
    by Guillaume Paillard, Richard Lavery
    posted to dependency by nklee on 2008-05-08 00:47:28 as **
  • MOGAMOD: Multi-objective genetic algorithm for motif discovery
    Expert Systems with Applications, Vol. In Press, Corrected Proof
    by Mehmet Kaya
    posted to genetic algorithm by nklee on 2008-05-02 07:35:23 as **
  • More robust detection of motifs in coexpressed genes by using phylogenetic information
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Pieter Monsieurs, Gert Thijs, Abeer Fadda, Sigrid De Keersmaecker, Jozef Vanderleyden, Bart De Moor, Kathleen Marchal
    posted to genomics comparative by nklee on 2008-05-02 07:25:54 as **
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to nucleosome by nklee on 2008-05-01 00:23:12 as **
  • A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
    Nucleic Acids Research, Vol. 34, No. 20. (November 2006), pp. 5730-5739.
    by Naughton, T Brian, Fratkin, Eugene, Batzoglou, Serafim, Brutlag, L Douglas
    posted to dependency by nklee on 2008-04-30 04:16:02 as **
  • Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism
    Nucl. Acids Res., Vol. 35, No. 13. (26 July 2007), pp. 4409-4419.
    by Hana Faiger, Marina Ivanchenko, Tali E Haran
    posted to dependency by nklee on 2008-04-29 05:53:44 as **
  • Prediction of complete gene structures in human genomic DNA.
    J Mol Biol, Vol. 268, No. 1. (25 April 1997), pp. 78-94.
    by C Burge, S Karlin
    posted to dependency by nklee on 2008-04-28 06:06:16 as ** along with 8 people and 2 groups pcahan1 indigoviolet kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso Bioinformatics EisenLab
  • Qualifying the relationship between sequence conservation and molecular function
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205.
    by Gregory M Cooper, Christopher D Brown
    posted to genomic conservation comparative by nklee on 2008-04-28 03:31:33 as ** along with 4 people aprasad brant djkt xingxu
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to yeast divergence by nklee on 2008-04-28 03:31:03 as ** along with 16 people and 2 groups anka aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Optimized mixed Markov models for motif identification
    BMC Bioinformatics, Vol. 7 (02 June 2006), 279.
    by Weichun Huang, David M Umbach, Uwe Ohler, Leping Li
    posted to dependency by nklee on 2008-04-22 09:06:51 as ** along with 1 person Ayest
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to review by nklee on 2008-04-18 00:35:10 as ** along with 7 people and 3 groups jyuh indigoviolet dchughes wenhan zwang cabbagezs ale EisenLab G4ID Genetics-of-Gambling
  • Nucleosome organization in the Drosophila genome.
    Nature (13 April 2008)
    by Travis N N Mavrich, Cizhong Jiang, Ilya P P Ioshikhes, Xiaoyong Li, Bryan J J Venters, Sara J J Zanton, Lynn P P Tomsho, Ji Qi, Robert L L Glaser, Stephan C C Schuster, David S S Gilmour, Istvan Albert, B Franklin F Pugh
    posted to dropsophila map nucleosome by nklee on 2008-04-16 23:49:26 as **
  • Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis
    Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1063-1069.
    by Matthias E Futschik, Hanspeter Herzel
    posted to microarray noise by nklee on 2008-04-16 23:23:06 as ** along with 1 person bootsy
  • AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes
    Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1041-1048.
    by Jan Mrazek, Shaohua Xie, Xiangxue Guo, Anuj Srivastava
    posted to prokaryotic tool web by nklee on 2008-04-16 23:18:17 as **
  • Assessment of composite motif discovery methods
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Kjetil Klepper, Geir Sandve, Osman Abul, Jostein Johansen, Finn Drablos
    posted to composite evaluation by nklee on 2008-04-16 08:25:34 as ** along with 5 people and 1 group chad_davis maximilianh idonaldson xili03 csdhwang Motif Discovery
  • A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors.
    Nucleic Acids Res, Vol. 34, No. 21. (2006)
    by H Ji, SA Vokes, WH Wong
    posted to analysis comparative by nklee on 2008-04-16 08:20:37 as ** along with 1 person jtomasch
  • An efficient method for statistical significance calculation of transcription factor binding sites.
    Bioinformation, Vol. 2, No. 5. (2007), pp. 169-174.
    by Z Qian, L Lu, L Qi, Y Li
    posted to significance statistical by nklee on 2008-04-14 02:23:24 as ** along with 2 people and 1 group maximilianh idonaldson Motif Discovery
  • notes Detecting cis-regulatory binding sites for cooperatively binding proteins
    Nucleic AcidsRes., Vol. 0, No. 0.
    by Liesbeth van Oeffelen1, Pierre Cornelis, Wouter Van Delm, Fedor De Ridder, Bart De Moor, Yves Moreau1
    posted to cis-regulatory composite discovery motif by nklee on 2008-04-10 06:45:31 as ** along with 1 group Motif Discovery
  • Inferring protein DNA dependencies using motif alignments and mutual information
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i297-304.
    by Shaun Mahony, Philip E Auron, Panayiotis V Benos
    posted to dependency by nklee on 2008-04-03 06:52:26 as **
  • A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli
    PLoS Computational Biology, Vol. 4, No. 3. (2008), e1000044.
    by Jason Ernst, Qasim K Beg, Krin A Kay, Ga´bor B Zsi, Zolta´n N Oltvai, Ziv Bar-Joseph1
    posted to semi-supervised by nklee on 2008-04-03 06:44:20 as ** along with 1 person and 1 group jjray Motif Discovery
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579.
    by AE Kel, E Gössling, I Reuter, E Cheremushkin, OV Kel-Margoulis, E Wingender
    posted to match recognition by nklee on 2008-04-03 06:15:21 as ** along with 6 people setar aprasad reidy danish_punter maximilianh emptyhb
  • A Profile-Based Deterministic Sequential Monte Carlo Algorithm for Motif Discovery.
    Bioinformatics (17 November 2007)
    by Kuo-Ching C Liang, Xiaodong Wang, Dimitris Anastassiou
    posted to no-tag by nklee on 2008-04-01 08:23:43 as ** along with 4 people and 1 group grahamc cjeans maximilianh idonaldson Motif Discovery
  • SGD: Saccharomyces Genome Database.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 73-79.
    by JM Cherry, C Adler, C Ball, SA Chervitz, SS Dwight, ET Hester, Y Jia, G Juvik, T Roe, M Schroeder, S Weng, D Botstein
    posted to yeast by nklee on 2008-04-01 03:35:40 as ** along with 3 people and 1 group irenas RMGraze lusk dbk-lab
  • JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
    posted to database eukaryotic jaspar by nklee on 2008-04-01 02:08:44 as read along with 4 people and 2 groups aalibes indigoviolet jguinney heliopais EisenLab Motif Discovery
  • SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
    Bioinformatics, Vol. 15, No. 7-8. (g 1999), pp. 607-611.
    by J Zhu, MQ Zhang
    posted to no-tag by nklee on 2008-04-01 02:00:27 as read along with 4 people chad_davis xiaobeizhao lusk njcitulike
  • Estimating transcription factor bindability on DNA
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 622-630.
    by T Tsunoda, T Takagi
    posted to matching matrix position recognition weight by nklee on 2008-03-31 03:15:04 as **
  • A deterministic motif finding algorithm with application to the human genome
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1047-1054.
    by Lawrence S Hon, Ajay N Jain
    posted to deterministic discovery motif search by nklee on 2008-03-30 03:08:58 as ** along with 1 person and 1 group dquest Motif Discovery
  • Artificial neural network models for prediction of intestinal permeability of oligopeptides
    BMC Bioinformatics, Vol. 8 (11 July 2007), 245.
    by Eunkyoung Jung, Junhyoung Kim, Minkyoung Kim, Dong H Jung, Hokyoung Rhee, Jae-Min Shin, Kihang Choi, Sang-Kee Kang, Min-Kook Kim, Cheol-Heui Yun, Yun-Jaie Choi, Seung-Hoon Choi
    posted to network neural by nklee on 2008-03-29 01:01:53 as **
  • Input encoding method for identifying transcription start sites in RNA polymerase II promoters by neural networks
    Soft Computing - A Fusion of Foundations, Methodologies and Applications, Vol. 10, No. 4. (1 February 2006), pp. 331-337.
    by LS Ho, JC Rajapakse
    posted to encoding network neural by nklee on 2008-03-29 00:57:34 as **
  • A non-parametric model for transcription factor binding sites
    Nucl. Acids Res., Vol. 31, No. 19. (1 October 2003), e116.
    by Oliver D King, Frederick P Roth
    posted to dependency position by nklee on 2008-03-29 00:45:25 as **
  • A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
    Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739.
    by BT Naughton, E Fratkin, S Batzoglou, DL Brutlag
    posted to dependency position by nklee on 2008-03-29 00:38:58 as ** along with 3 people and 1 group xili03 indigoviolet yevishere EisenLab
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to hmm by nklee on 2008-03-27 05:05:56 as ** along with 8 people miguel chad_davis eweaver dgront rabio cjeans suizan yoanjacquemin
  • An Efficient Cis-Element Discovery Method Using Multiple Sequence Comparisons Based on Evolutionary Relationships
    Genomics, Vol. 71, No. 2. (15 January 2001), pp. 260-262.
    by Kenta Sumiyama, Chang-Bae Kim, Frank H Ruddle
    posted to no-tag by nklee on 2008-03-25 21:28:19 as **
  • Motif discovery by monotone scores
    Discrete Applied Mathematics, Vol. 155, No. 6-7. (1 April 2007), pp. 695-706.
    by Alberto Apostolico, Cinzia Pizzi
    posted to no-tag by nklee on 2008-03-25 21:22:39 as **
  • A Simple Vision-Based Algorithm for Decision Making in Flying Drosophila
    Current Biology, Vol. 18, No. 6. (25 March 2008), pp. 464-470.
    by Gaby Maimon, Andrew D Straw, Michael H Dickinson
    posted to discovery motif by nklee on 2008-03-25 21:08:13 as **
  • AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol, Vol. 140, No. 3. (March 2006), pp. 818-829.
    by SK Palaniswamy, S James, H Sun, RS Lamb, RV Davuluri, E Grotewold
    posted to arabidopsis by nklee on 2008-03-20 08:15:20 as ** along with 2 people and 1 group kengg braingrind Plantandetc
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to binding evolution sites by nklee on 2008-03-14 01:23:16 as ** along with 7 people and 1 group aalibes chad_davis sebastien_vigneau lusk Garamonfok maximilianh emptyhb BioinfoCIPF
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to evolution by nklee on 2008-03-14 00:53:39 as ** along with 6 people and 2 groups emptyhb briann dpollard adepace lusk cisevol EisenLab cis-regulatory-evolution
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