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niallhaslams library [174 articles]

Neue Artikel in niallhaslams library ordered by importance.
  • Affinity maturation of antibodies assisted by in silico modeling
    Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 9029-9034.
    by Rodrigo Barderas, Johan Desmet, Peter Timmerman, Rob Meloen, Ignacio J Casal
    posted to protein-design protein affinity-proteomics affinity by niallhaslam on 2008-07-02 10:14:24 as *****
  • Antibody microarray-based oncoproteomics
    Expert Opinion on Biological Therapy, Vol. 6, No. 8. (August 2006), pp. 833-838.
    by Borrebaeck, Carl Ak
    posted to affinity protein-array protein-interaction protein-protein proteomics by niallhaslam on 2008-04-22 09:45:43 as *****
  • Affinity reagent resources for human proteome detection: Initiatives and perspectives
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by Oda Stoevesandt, Michael J Taussig
    posted to affinity immunoinformatics protein proteomics by niallhaslam on 2008-04-22 09:45:07 as ***** along with 1 person jyuh
  • Genotypic resistance testing in HIV by arrayed primer extension.
    Anal Bioanal Chem (18 January 2008)
    by Michaela Schanné, Jochen Bodem, Aslihan Gerhold-Ay, Anette Jacob, Kurt Fellenberg, Hans-Georg G Kräusslich, Jörg D Hoheisel
    posted to genotyping microarray primer-design probe-design probe-selection resequencing by niallhaslam on 2008-04-01 10:33:24 as *****
  • The Protein Identifier Cross-Reference (PICR) service: reconciling protein identifiers across multiple source databases
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Richard Cote, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob
    posted to cross-reference database ensembl protein swissprot uniprot webservices by niallhaslam on 2008-02-21 15:24:30 as ***** along with 5 people jyuh dullhunk antonkratz gmonce barriot
  • The impact of next-generation sequencing technology on genetics
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Elaine R Mardis
    posted to assembly resequencing sequencing by niallhaslam on 2008-02-13 12:35:36 as ***** along with 9 people and 2 groups cybaer1 jlgreen hpaces giovenko jyuh dchughes djkt urgi zerojinx iSEEM Green Lab
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to assembly sequencing by niallhaslam on 2008-02-13 12:34:02 as ***** along with 9 people tharris mariakmejia jfr Neeperando jmeppley dchughes djkt GustavoLacerda urgi
  • notes Antibody-protein interactions: benchmark datasets and prediction tools evaluation
    BMC Structural Biology, Vol. 7 (02 October 2007), 64.
    by Julia V Ponomarenko, Philip E Bourne
    posted to antibody benchmarking epitope-selection protein-protein structure-prediction by niallhaslam on 2007-11-06 10:05:19 as ***** along with 1 person jyuh
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to reassembly resequencing short-read by niallhaslam on 2007-11-06 10:00:18 as ***** along with 8 people and 1 group iris42 jwhitney timflutre stajich ghattem azazello GustavoLacerda flexer Berkeley Mycology
  • METAGENOMICS: DNA SEQUENCING OF ENVIRONMENTAL SAMPLES
    Nat Rev Genet, Vol. 6, No. 11. (November 2005), pp. 805-814.
    by Susannah G Tringe, Edward M Rubin
    posted to reassesmbly resequencing sequencing by niallhaslam on 2007-10-29 09:55:51 as ***** along with 1 person jmeppley
  • Specific and non specific hybridization of oligonucleotide probes on microarrays
    Biophys. J. (15 April 2005), biophysj.104.055343.
    by Hans Binder, Stephan Preibisch
    posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 15:31:54 as *****
  • Improving comparability between microarray probe signals by thermodynamic intensity correction.
    Nucleic Acids Res (2 March 2007)
    by Georg M M Bruun, Rasmus Wernersson, Agnieszka S S Juncker, Hanni Willenbrock, Henrik Bjørn B Nielsen
    posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 13:48:54 as ***** along with 5 people jyuh ghattem GeeSharpMinor talponer waszak
  • Analysis of probe level patterns in Affymetrix microarray data
    BMC Bioinformatics, Vol. 8 (04 May 2007), 146.
    by Alexander C Cambon, Abdelnaby Khalyfa, Nigel GF Cooper, Caryn M Thompson
    posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 13:48:36 as ***** along with 3 people bertelsen jfr ghattem
  • Oligonucleotide microarrays: widely applied poorly understood
    Brief Funct Genomic Proteomic, Vol. 6, No. 2. (1 June 2007), pp. 141-148.
    by Alex E Pozhitkov, Diethard Tautz, Peter A Noble
    posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 13:34:08 as ***** along with 1 person jfr
  • Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines
    BMC Bioinformatics, Vol. 8 (26 September 2007), 361.
    by Huynh-Hoa Bui, John Sidney, Wei Li, Nicolas Fusseder, Alessandro Sette
    posted to antibody conservation design linear-motif by niallhaslam on 2007-10-02 15:37:50 as *****
  • Integrating sequence and structural biology with DAS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreas Prlic, Thomas Down, Eugene Kulesha, Robert Finn, Andreas Kahari, Tim Hubbard
    posted to annotation das design by niallhaslam on 2007-09-12 15:26:16 as ***** along with 4 people jyuh dullhunk massivemayhem ryanraaum
  • Characterization of Mismatch and High-signal Intensity Probes Associated with Affymetrix Genechips.
    Bioinformatics (6 June 2007)
    by Yonghong Wang, Ze-Hong H Miao, Yves Pommier, Ernest S S Kawasaki, Audrey Player
    posted to hybridisation melting microarray oligonucleotide resequencing sequencing signal-intensity by niallhaslam on 2007-09-11 11:17:16 as ***** along with 2 people bertelsen ghattem
  • Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.
    Nucleic Acids Res (7 August 2007)
    by Thomas E E Royce, Joel S S Rozowsky, Mark B B Gerstein
    posted to design microarray oligonucleotide universal by niallhaslam on 2007-09-03 13:20:38 as ***** along with 2 people jfr sebastien_vigneau
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to alignment resequencing sequence sequence-alignment by niallhaslam on 2008-02-14 10:46:54 as **** along with 6 people urgi caseybrown jyuh ghattem GustavoLacerda mdimon
  • Evolution of cooperation without reciprocity
    Nature, Vol. 414, No. 6862. (22 November 2001), pp. 441-443.
    by Rick L Riolo, Michael D Cohen, Robert Axelrod
    posted to complexity cooperation evolution by niallhaslam on 2007-12-17 10:57:03 as **** along with 7 people and 1 group mits ElFishski voiklis dpeeler marcusfrean JanHGKlabbers sharmiamala ColDyn
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to domains modular-architecture network protein protein-network protein-protein by niallhaslam on 2007-12-13 12:36:45 as **** along with 9 people carlk bicko chad_davis choonpeng grahamc cjeans zwang biehl marti
  • A human protein atlas based on antibody proteomics.
    Curr Opin Mol Ther, Vol. 8, No. 3. (June 2006), pp. 185-190.
    by A Persson, S Hober, M Uhlén
    posted to antibody antibody-array proteomics by niallhaslam on 2007-12-03 10:47:04 as ****
  • Microarray-based DNA resequencing using 3' blocked primers.
    Anal Biochem (4 November 2007)
    by Jakub Sram, Steve S S Sommer, Qiang Liu
    posted to design microarray oligonucleotide resequencing by niallhaslam on 2007-12-03 10:17:56 as **** along with 1 person jyuh
  • Spatially addressable protein array: ssDNA-directed assembly for antibody microarray.
    Electrophoresis (15 November 2007)
    by Jin Kiat K Ng, Parayil Kumaran K Ajikumar, Yew Chung C Tang, Jim Yang Y Lee, Gregory Stephanopoulos, Heng-Phon P Too
    posted to antibodies antibody-array protein-array by niallhaslam on 2007-11-29 10:34:12 as ****
  • The evolution of cooperation
    Quarterly Review of Biology, Vol. 79, No. 2. (June 2004), pp. 135-160.
    by Joel L Sachs, Ulrich G Mueller, Thomas P Wilcox, James J Bull
    posted to cooperation evolution by niallhaslam on 2007-11-26 13:26:42 as **** along with 2 people mauricelee carolaccs
  • Cooperation and conflict in quorum-sensing bacterial populations
    Nature, Vol. 450, No. 7168. (15 November 2007), pp. 411-414.
    by Stephen P Diggle, Ashleigh S Griffin, Genevieve S Campbell, Stuart A West
    posted to cooperation embl_mol_evol_club evolution poss-journal-club by niallhaslam on 2007-11-20 11:23:33 as **** along with 6 people qwermish stevanspringer oamg blick CareyNadell bakakaj
  • Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays
    Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2566-2572.
    by Chunlei Wu, Haitao Zhao, Keith Baggerly, Roberto Carta, Li Zhang
    posted to interactions microarray oligonucleotide short-read signal-intensity by niallhaslam on 2007-11-12 09:59:53 as **** along with 1 person jfr
  • The Coevolution of Parochial Altruism and War
    Science, Vol. 318, No. 5850. (26 October 2007), pp. 636-640.
    by Jung-Kyoo Choi, Samuel Bowles
    posted to cooperation evolution by niallhaslam on 2007-11-06 11:32:42 as **** along with 1 person dancos
  • EVOLUTION: The Sharp End of Altruism
    Science, Vol. 318, No. 5850. (26 October 2007), pp. 581-582.
    by Holly Arrow
    posted to cooperation evolution by niallhaslam on 2007-11-06 11:29:22 as **** along with 2 people gennaro psique
  • Community structure and metabolism through reconstruction of microbial genomes from the environment
    Nature, Vol. 428, No. 6978. (4 March 2004), pp. 37-43.
    by Gene W Tyson, Jarrod Chapman, Philip Hugenholtz, Eric E Allen, Rachna J Ram, Paul M Richardson, Victor V Solovyev, Edward M Rubin, Daniel S Rokhsar, Jillian F Banfield
    posted to reassesmbly resequencing by niallhaslam on 2007-10-29 11:40:37 as **** along with 7 people and 2 groups balajis eweaver michC mabedin azazello beatrizfernandez rvgomes Microbial-Ecology MBLAB
  • Community structure and metabolism through reconstruction of microbial genomes from the environment.
    Nature, Vol. 428, No. 6978. (4 March 2004), pp. 37-43.
    by GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, VV Solovyev, EM Rubin, DS Rokhsar, JF Banfield
    posted to reassesmbly resequencing by niallhaslam on 2007-10-29 11:38:19 as **** along with 4 people mcox bpb bluto wenhan
  • Primer design for multiplexed genotyping.
    Methods Mol Biol, Vol. 402 (2007), pp. 269-286.
    by L Kaderali
    posted to microarray oligonucleotide primer-design resequencing sequencing design by niallhaslam on 2007-10-25 09:17:10 as ****
  • Design of recombinant antibody microarrays for complex proteome analysis: Choice of sample labeling-tag and solid support.
    Proteomics, Vol. 7, No. 17. (5 September 2007), pp. 3055-3065.
    by Christer Wingren, Johan Ingvarsson, Linda Dexlin, Dominika Szul, Carl A K A Borrebaeck
    posted to antibody microarray protein-protein by niallhaslam on 2007-10-02 10:16:07 as **** along with 1 person jyuh
  • Inferring function using patterns of native disorder in proteins.
    PLoS Comput Biol, Vol. 3, No. 8. (24 August 2007)
    by A Lobley, MB Swindells, CA Orengo, DT Jones
    posted to disorder linear-motif protein structure-prediction by niallhaslam on 2007-09-24 10:41:21 as **** along with 1 person chad_davis
  • Linear motifs in the C-terminus of D. melanogaster cryptochrome
    Biochemical and Biophysical Research Communications, Vol. 355, No. 2. (6 April 2007), pp. 531-537.
    by Matthew J Hemsley, Gabriella M Mazzotta, Moyra Mason, Stephane Dissel, Stefano Toppo, Mario A Pagano, Federica Sandrelli, Flavio Meggio, Ezio Rosato, Rodolfo Costa, Silvio C Tosatto
    posted to linear-motif by niallhaslam on 2007-09-19 12:43:04 as ****
  • Linear motifs: evolutionary interaction switches.
    FEBS Lett, Vol. 579, No. 15. (13 June 2005), pp. 3342-3345.
    by V Neduva, RB Russell
    posted to linear-motif protein protein-protein by niallhaslam on 2007-09-18 15:29:28 as **** along with 3 people and 2 groups chad_davis marcius Evangelia BioinfoCIPF SGU-CIPF
  • OBO-Edit - An Ontology Editor for Biologists.
    Bioinformatics (1 June 2007)
    by John Day-Richter, Midori A A Harris, Melissa Haendel, Suzanna Lewis
    posted to ontology by niallhaslam on 2007-09-11 11:16:41 as **** along with 6 people and 1 group jyuh dullhunk sebastien_vigneau leechuck sgoetz sobolevnrm baker-group
  • Screening for PTB Domain Binding Partners and Ligand Specificity Using Proteome-Derived NPXY Peptide Arrays
    Mol. Cell. Biol., Vol. 26, No. 22. (15 November 2006), pp. 8461-8474.
    by Matthew J Smith, Rod W Hardy, James M Murphy, Nina Jones, Tony Pawson
    posted to antibody motif protein by niallhaslam on 2007-09-05 09:19:46 as ****
  • Design of Recombinant Antibody Microarrays for Serum Protein Profiling: Targeting of Complement Proteins.
    J Proteome Res (16 August 2007)
    by Johan Ingvarsson, Anette Larsson, Anders G Sjöholm, Lennart Truedsson, Bo Jansson, Carl A Borrebaeck, Christer Wingren
    posted to antibody microarray by niallhaslam on 2007-08-27 10:13:34 as **** along with 1 person jyuh
  • Web services at the European bioinformatics institute.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by A Labarga, F Valentin, M Anderson, R Lopez
    posted to webservices by niallhaslam on 2007-08-21 13:02:38 as **** along with 6 people alanrw sim82 moborg dullhunk sujaikumar sgoetz
  • MyHits: improvements to an interactive resource for analyzing protein sequences.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by M Pagni, V Ioannidis, L Cerutti, M Zahn-Zabal, CV Jongeneel, J Hau, O Martin, D Kuznetsov, L Falquet
    posted to annotation protein by niallhaslam on 2007-08-21 13:02:17 as **** along with 1 person Jporci
  • Phospho-epitope binding by the BRCT domains of hPTIP controls multiple aspects of the cellular response to DNA damage.
    Nucleic Acids Res (8 August 2007)
    by Ivan M M Munoz, Paul A A Jowsey, Rachel Toth, John Rouse
    posted to phophorylation phospho-epitope by niallhaslam on 2007-08-21 13:00:46 as ****
  • Sperm Sociality: Cooperation, Altruism, and Spite
    PLoS Biology, Vol. 6, No. 5. (1 May 2008), e130.
    by Tommaso Pizzari, Kevin R Foster
    posted to evolution cooperation by niallhaslam on 2008-07-15 09:19:59 as *** along with 1 person reyez
  • TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
    Bioinformatics (Oxford, England) (23 April 2008)
    by Gábor E E Tusnády, Lajos Kalmár, Hédi Hegyi, Péter Tompa, István Simon
    posted to structure-prediction protein-design modular-architecture domains disorder by niallhaslam on 2008-06-25 09:09:42 as *** along with 1 person cabbagesofdoom
  • Predicting failure rate of PCR in large genomes
    Nucl. Acids Res. (20 May 2008), gkn290.
    by Reidar Andreson, Tonu Mols, Maido Remm
    posted to sequencing resequencing primer-design pcr microarray by niallhaslam on 2008-06-24 10:41:26 as *** along with 3 people jyuh balicea wisdom_love
  • Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms
    PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2456.
    by Enrique Balleza, Elena R Alvarez-Buylla, Alvaro Chaos, Stuart Kauffman, Ilya Shmulevich, Maximino Aldana
    posted to network microarray complex-systems complexity by niallhaslam on 2008-06-19 10:05:13 as *** along with 1 person and 1 group josedavid GEB
  • The time duration for DNA thermal denaturation
    Journal of Physics: Condensed Matter, Vol. 20, No. 3. (2008), 035101.
    by Gabriel F Calvo, Ramon F Alvarez-Estrada
    posted to dna thermal-equivalence thermodynamics by niallhaslam on 2008-03-03 11:02:19 as ***
  • Identification of the HIV-1 gp41 core-binding motif - HXXNPF
    FEBS Letters, Vol. 580, No. 20. (4 September 2006), pp. 4807-4814.
    by Jing-He Huang, Zu-Qiang Liu, Shuwen Liu, Shibo Jiang, Ying-Hua Chen
    posted to antibodies antibody interactions motif protein-interaction protein-protein by niallhaslam on 2008-02-13 15:02:26 as ***
  • A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip(R) whole-genome resequencing platform.
    Nucleic Acids Res (15 November 2007)
    by Gagan A A Pandya, Michael H H Holmes, Sirisha Sunkara, Andrew Sparks, Yun Bai, Kathleen Verratti, Kelly Saeed, Pratap Venepally, Behnam Jarrahi, Robert D D Fleischmann, Scott N N Peterson
    posted to base-calling design microarray resequencing by niallhaslam on 2007-12-03 10:17:30 as *** along with 1 person giovanni
  • Probe selection for DNA microarrays using OligoWiz.
    Nat Protoc, Vol. 2, No. 11. (2007), pp. 2677-2691.
    by R Wernersson, AS Juncker, HB Nielsen
    posted to microarray oligonucleotide probe-design probe-selection signal-intensity by niallhaslam on 2007-11-29 10:33:36 as ***
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