registrieren | anmelden | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

newton1234s alignment [39 articles]

Neue Publikationen in newton1234s Bibliothek eingetragen unter dem Bezeichner: alignment. You can also see everyone's alignment.
  • Improving the quality of protein structure models by selecting from alignment alternatives
    BMC Bioinformatics, Vol. 7 (27 July 2006), 364.
    by Ingolf Sommer, Stefano Toppo, Oliver Sander, Thomas Lengauer, Silvio CE Tosatto
    posted to alignment optimization by newton1234 on 2008-07-16 09:54:30 as **
  • Comparative protein structure modeling by iterative alignment, model building and model assessment
    Nucl. Acids Res., Vol. 31, No. 14. (15 July 2003), pp. 3982-3992.
    by Bino John, Andrej Sali
    posted to alignment modeller optimization by newton1234 on 2008-07-16 09:08:40 as ** along with 1 person j3xucite
  • Multiple DNA and protein sequence alignment based on segment-to-segment comparison
    Proceedings of the National Academy of Sciences, Vol. 93, No. 22. (29 October 1996), pp. 12098-12103.
    by Burkhard Morgenstern, Andreas Dress, Thomas Werner
    posted to alignment msa by newton1234 on 2008-06-25 17:11:36 as ** along with 2 people adijr gjuggler
  • Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Journal of molecular biology, Vol. 264, No. 4. (13 December 1996), pp. 823-838.
    by O Gotoh
    posted to alignment by newton1234 on 2008-06-25 17:08:12 as **
  • A Template-based Mixed-Integer Linear Programming Sequence Alignment Model.
    (2007)
    by SR Mcallister, R Rajgaria, CA Floudas
    edited by T Torn, J Zilinskas
    posted to alignment optimization by newton1234 on 2008-06-25 16:52:59 as **
  • Global pairwise sequence alignment through mixed-integer linear programming: a template-free approach
    Optimization Methods and Software, Vol. 22, No. 1. (2007), pp. 127-144.
    by SR Mcallister, R Rajgaria, CA Floudas
    posted to alignment optimization by newton1234 on 2008-06-25 16:18:27 as **
  • A path selection approach to global pairwise sequence alignment using integer linear optimization
    Optimization, Vol. 57, No. 1. (2008), pp. 101-111.
    by SR Mcallister, R Rajgaria, CA Floudas
    posted to alignment optimization by newton1234 on 2008-06-25 16:16:04 as **
  • PROMALS: towards accurate multiple sequence alignments of distantly related proteins
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 802-808.
    by Pei, Jimin, Grishin, V Nick
    posted to alignment msa by newton1234 on 2008-06-17 23:16:16 as **
  • HOMSTRAD: a database of protein structure alignments for homologous families.
    Protein Sci., Vol. 7, No. 11. (November 1998), pp. 2469-2471.
    by K Mizuguchi, CM Deane, TL Blundell, JP Overington
    posted to alignment msa by newton1234 on 2008-06-17 23:13:01 as ** along with 6 people bicko chrn massivemayhem medic0747 cdeane sebk
  • BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
    Bioinformatics, Vol. 15, No. 1. (1 January 1999), pp. 87-88.
    by Jd Thompson, F Plewniak, O Poch
    posted to alignment msa by newton1234 on 2008-06-17 23:10:26 as ** along with 1 person BioNica
  • Simultaneous comparison of three protein sequences.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 82, No. 10. (May 1985), pp. 3073-3077.
    by M Murata, JS Richardson, JL Sussman
    posted to alignment by newton1234 on 2008-06-17 23:08:20 as **
  • Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases.
    Trends Biochem Sci, Vol. 23, No. 11. (November 1998), pp. 444-447.
    by SF Altschul, EV Koonin
    posted to alignment by newton1234 on 2008-06-17 23:05:45 as ** along with 2 people cerca chad_davis
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res., Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to alignment by newton1234 on 2008-06-17 23:04:47 as ** along with 46 people and 4 groups pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin mariakmejia granujilla marti CharlesM EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • A novel randomized iterative strategy for aligning multiple protein sequences.
    Computer applications in the biosciences : CABIOS, Vol. 7, No. 4. (October 1991), pp. 479-484.
    by MP Berger, PJ Munson
    posted to alignment msa by newton1234 on 2008-06-17 21:25:22 as **
  • ProbCons: Probabilistic consistency-based multiple sequence alignment.
    Genome Res., Vol. 15, No. 2. (February 2005), pp. 330-340.
    by CB Do, MS Mahabhashyam, M Brudno, S Batzoglou
    posted to alignment msa by newton1234 on 2008-06-17 21:24:26 as ** along with 6 people and 1 group bpb radek balajis stajich olympos gjuggler Berkeley Mycology
  • SAGA: sequence alignment by genetic algorithm.
    Nucleic Acids Res., Vol. 24, No. 8. (15 April 1996), pp. 1515-1524.
    by C Notredame, DG Higgins
    posted to alignment msa by newton1234 on 2008-06-17 21:23:30 as **
  • Simulated annealing algorithm for the multiple sequence alignment problem: the approach of polymers in a random medium.
    Phys. Rev. E, Vol. 72, No. 3 Pt 1. (September 2005), 031915.
    by M Hernández-Guía, R Mulet, S Rodríguez-Pérez
    posted to alignment msa by newton1234 on 2008-06-17 21:22:43 as **
  • Multiple sequence alignment using simulated annealing
    CABIOS, Vol. 10, No. 4. (1 July 1994), pp. 419-426.
    by Jin Kim, Sakti Pramanik, Moon J Chung
    posted to alignment msa by newton1234 on 2008-06-17 21:20:47 as **
  • Multiple sequence alignment by parallel simulated annealing.
    CABIOS, Vol. 9, No. 3. (June 1993), pp. 267-273.
    by M Ishikawa, T Toya, M Hoshida, K Nitta, A Ogiwara, M Kanehisa
    posted to alignment msa by newton1234 on 2008-06-17 21:18:18 as **
  • Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.
    Proteins, Vol. 58, No. 2. (1 February 2005), pp. 321-328.
    by H Zhou, Y Zhou
    posted to alignment msa by newton1234 on 2008-06-17 21:17:33 as ** along with 1 person j3xucite
  • SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3615-3621.
    by H Zhou, Y Zhou
    posted to alignment msa by newton1234 on 2008-06-17 21:16:06 as **
  • T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    J. Mol. Biol., Vol. 302, No. 1. (8 September 2000), pp. 205-217.
    by C Notredame, DG Higgins, J Heringa
    posted to alignment msa by newton1234 on 2008-06-17 21:14:35 as ** along with 9 people and 1 group miguel dayjm indigoviolet ffranca treangen Haggan siebertm adijr marti EisenLab
  • MUSCLE: multiple sequence alignment with high accuracy and high throughput.
    Nucleic Acids Res., Vol. 32, No. 5. (2004), pp. 1792-1797.
    by RC Edgar
    posted to alignment msa by newton1234 on 2008-06-17 21:13:52 as ** along with 18 people and 2 groups sebk agustinarce fhsantanna nachtalp bpb chrn jwm Haggan sanchezbuelna timflutre olympos martainn edvin skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res., Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to alignment msa by newton1234 on 2008-06-17 21:12:55 as ** along with 24 people and 1 group usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre adijr xingxu Lombardo_7 biomedical-nlp
  • Progressive sequence alignment as a prerequisite to correct phylogenetic trees.
    J. Mol. Evol., Vol. 25, No. 4. (1987), pp. 351-360.
    by DF Feng, RF Doolittle
    posted to alignment msa by newton1234 on 2008-06-17 21:12:10 as ** along with 3 people balajis nuke2005 AaronDarling
  • Identification of common molecular subsequences.
    J. Mol. Biol., Vol. 147, No. 1. (25 March 1981), pp. 195-197.
    by TF Smith, MS Waterman
    posted to alignment by newton1234 on 2008-06-17 21:10:48 as ** along with 9 people creswick vavi bicko dgront rabio cjeans incovoma sujaikumar bozdagd
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins.
    J. Mol. Biol., Vol. 48, No. 3. (March 1970), pp. 443-453.
    by SB Needleman, CD Wunsch
    posted to alignment by newton1234 on 2008-06-17 21:09:17 as ** along with 6 people jwm dgront rabio incovoma yylin Ema
  • The multiple sequence alignment problem in biology
    SIAM J. Appl. Math., Vol. 48, No. 5. (1988), pp. 1073-1082.
    by Humberto Carrillo, David Lipman
    posted to alignment msa by newton1234 on 2008-06-17 21:08:12 as **
  • On the complexity of multiple sequence alignment.
    J. Comput. Biol., Vol. 1, No. 4. (1994), pp. 337-348.
    by L Wang, T Jiang
    posted to alignment msa by newton1234 on 2008-06-17 21:03:46 as ** along with 2 people treangen yylin
  • COFFEE: an objective function for multiple sequence alignments.
    Bioinformatics, Vol. 14, No. 5. (June 1998), pp. 407-422.
    by C Notredame, L Holm, DG Higgins
    posted to alignment msa by newton1234 on 2008-06-17 21:02:50 as **
  • Weights for data related by a tree.
    J. Mol. Biol., Vol. 207, No. 4. (20 June 1989), pp. 647-653.
    by SF Altschul, RJ Carroll, DJ Lipman
    posted to alignment msa by newton1234 on 2008-06-17 21:01:51 as ** along with 1 person nuke2005
  • Gap costs for multiple sequence alignment.
    Journal of theoretical biology, Vol. 138, No. 3. (8 June 1989), pp. 297-309.
    by SF Altschul
    posted to alignment msa by newton1234 on 2008-06-17 21:00:38 as **
  • Recent progress in multiple sequence alignment: a survey.
    Pharmacogenomics, Vol. 3, No. 1. (January 2002), pp. 131-144.
    by C Notredame
    posted to alignment msa by newton1234 on 2008-06-17 20:58:54 as **
  • The estimation of statistical parameters for local alignment score distributions.
    Nucleic Acids Res, Vol. 29, No. 2. (15 January 2001), pp. 351-361.
    by SF Altschul, R Bundschuh, R Olsen, T Hwa
    posted to alignment statistics by newton1234 on 2008-05-27 17:06:01 as ** along with 2 people catmat treangen
  • Scoring profile-to-profile sequence alignments.
    Protein Sci, Vol. 13, No. 6. (June 2004), pp. 1612-1626.
    by G Wang, RL Dunbrack
    posted to alignment by newton1234 on 2008-05-21 19:57:19 as ** along with 2 people dgront rabio
  • Fold recognition by concurrent use of solvent accessibility and residue depth.
    Proteins, Vol. 68, No. 3. (15 August 2007), pp. 636-645.
    by S Liu, C Zhang, S Liang, Y Zhou
    posted to alignment foldrecognition solventaccessibility by newton1234 on 2008-04-03 10:13:41 as ** along with 1 person schuylrp
  • PROMALS web server for accurate multiple protein sequence alignments.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007)
    by J Pei, BH Kim, M Tang, NV Grishin
    posted to alignment msa by newton1234 on 2008-03-12 07:21:42 as **
  • PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 802-808.
    by J Pei, NV Grishin
    posted to alignment msa by newton1234 on 2008-03-12 07:20:47 as **
  • PROMALS3D: a tool for multiple protein sequence and structure alignments.
    Nucleic Acids Res (20 February 2008)
    by Jimin Pei, Bong-Hyun H Kim, Nick V V Grishin
    posted to alignment msa by newton1234 on 2008-03-12 07:20:01 as ** along with 2 people and 1 group sunhwan sobolevnrm baker-group
    • Bemerkung: Sie können diese Seite wie folgt zitieren: http://www.citeulike.org/user/newton1234/tag/alignment

    RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.