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neils Chen [22 articles]

Recent papers posted to neils library by the author Chen. You can also see everyones Chen.
  • Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication
    PLoS ONE, Vol. 3, No. 10. (1 October 2008), e3299.
    by Ji'an Pan, Xiaoxue Peng, Yajing Gao, Zhilin Li, Xiaolu Lu, Yingzhao Chen, Musarat Ishaq, Dan Liu, Marta L Dediego, Luis Enjuanes, Deyin Guo
    posted to virus sars protein-protein interaction genomics by neils on 2008-10-02 00:58:34 as ** along with 1 person cabbagesofdoom
  • Rapid whole-genome mutational profiling using next-generation sequencing technologies
    Genome Res., Vol. 18, No. 10. (October 2008), pp. 1638-1642.
    by Douglas R Smith, Aaron R Quinlan, Heather E Peckham, Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F Donahue, Nadeem Tusneem, Michael P Stromberg, Donald A Stewart, Lu Zhang, Swati S Ranade, Jason B Warner, Clarence C Lee, Brittney E Coleman, Zheng Zhang, Stephen F Mclaughlin, Joel A Malek, Jon M Sorenson, Alan P Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S Rokhsar, Kevin J Mckernan, Thomas W Jeffries, Gabor T Marth, Paul M Richardson
    posted to yeast sequencing pichia next-generation mutation evolution by neils on 2008-10-02 00:57:12 as **
  • The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains
    BMC Genomics, Vol. 9 (01 October 2008), 452.
    by Siyuan Ren, Guang Yang, Youyu He, Yiguo Wang, Yixue Li, Zhengjun Chen
    posted to protein-protein motif linear interaction domain conservation by neils on 2008-10-02 00:53:33 as ** along with 1 person barriot
  • Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen
    posted to topology protein-protein prediction interaction complex bioinformatics by neils on 2008-09-25 02:20:03 as ** along with 1 person chad_davis
  • Identification of Four Novel Types of in Vitro Protein Modifications
    J. Proteome Res. (4 September 2008)
    by Gang Xing, Junmei Zhang, Yue Chen, Yingming Zhao
    posted to ptm proteomics post-translational modification lc-ms by neils on 2008-09-05 00:33:02 as ** along with 1 person brianb
  • notes Predicting PDZ domain-peptide interactions from primary sequences
    Nat Biotech, Vol. 26 (2008), pp. 1041-1045.
    by Jiunn R Chen, Bryan H Chang, John E Allen, Michael A Stiffler, Gavin Macbeath
    posted to bioinformatics domain interaction pdz peptide prediction protein-protein by neils on 2008-08-19 00:19:29 as **
  • Immobilized Metal Affinity Chromatography Revisited: pH/Acid Control toward High Selectivity in Phosphoproteomics
    J. Proteome Res. (16 August 2008)
    by Chia-Feng Tsai, Yi-Ting Wang, Yet-Ran Chen, Chen-Yu Lai, Pei-Yi Lin, Kuan-Ting Pan, Jeou-Yuan Chen, Kay-Hooi Khoo, Yu-Ju Chen
    posted to chromatography phosphopeptides proteomics purification by neils on 2008-08-16 12:07:38 as ** along with 1 person brianb
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
    posted to bioinformatics complex-i disease localisation mitochondria protein scl by neils on 2008-07-11 00:27:50 as ** along with 4 people brianb ptrobajo raiyar mdstobbe
  • Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF
    Genome Biology, Vol. 9, No. 7. (2008)
    by Agathe Bourgogne, Danielle Garsin, Xiang Qin, Kavindra Singh, Jouko Sillanpaa, Shailaja Yerrapragada, Yan Ding, Shannon D Rocha, Christian Buhay, Hua Shen, Guan Chen, Gabrielle Williams, Donna Muzny, Arash Maadani, Kristina Fox, Jason Gioia, Lei Chen, Yue Shang, Cesar Arias, Sreedhar Nallapareddy, Meng Zhao, Vittal Prakash, Shahreen Chowdhury, Huaiyang Jiang, Richard Gibbs, Barbara Murray, Sarah Highlander, George Weinstock
    posted to bacteria enterococcus genomics pathogen virulence by neils on 2008-07-09 03:42:20 as **
  • Protein structure protection commits gene expression patterns
    Genome Biology, Vol. 9 (07 July 2008), R107.
    by Jianping Chen, Han Liang, Ariel Fernandez
    posted to correlation disorder expression gene protein structure by neils on 2008-07-08 01:55:18 as ** along with 1 person daforerog
  • PhosphoScan: A Probability-Based Method for Phosphorylation Site Prediction Using MS2/MS3 Pair Information
    J. Proteome Res. (13 June 2008)
    by Yunhu Wan, Diane Cripps, Stefani Thomas, Patricia Campbell, Nicholas Ambulos, Ting Chen, Austin Yang
    posted to phosphorylation prediction probability mass-spec by neils on 2008-06-13 14:53:58 as **
  • Terminal proteins of Streptomyces chromosome can target DNA into eukaryotic nuclei
    Nucl. Acids Res. (14 May 2008), gkm1170.
    by Hsiu-Hui Tsai, Chih-Hung Huang, Alan M Lin, Carton W Chen
    posted to eukaryotic nucleus scl streptomyces targeting protein by neils on 2008-05-15 04:29:13 as **
  • SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Lukasz Kurgan, Krzysztof Cios, Ke Chen
    posted to bioinformatics prediction protein sequence structure by neils on 2008-05-02 00:27:57 as **
  • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    Nature, Vol. 452, No. 7190. (24 April 2008), pp. 991-996.
    by Ray Ming, Shaobin Hou, Yun Feng, Qingyi Yu, Alexandre Dionne-Laporte, Jimmy H Saw, Pavel Senin, Wei Wang, Benjamin V Ly, Kanako L Lewis, Steven L Salzberg, Lu Feng, Meghan R Jones, Rachel L Skelton, Jan E Murray, Cuixia Chen, Wubin Qian, Junguo Shen, Peng Du, Moriah Eustice, Eric Tong, Haibao Tang, Eric Lyons, Robert E Paull, Todd P Michael, Kerr Wall, Danny W Rice, Henrik Albert, Ming-Li Wang, Yun J Zhu, Michael Schatz, Niranjan Nagarajan, Ricelle A Acob, Peizhu Guan, Andrea Blas, Ching M Wai, Christine M Ackerman, Yan Ren, Chao Liu, Jianmei Wang, Jianping Wang, Jong-Kuk Na, Eugene V Shakirov, Brian Haas, Jyothi Thimmapuram, David Nelson, Xiyin Wang, John E Bowers, Andrea R Gschwend, Arthur L Delcher, Ratnesh Singh, Jon Y Suzuki, Savarni Tripathi, Kabi Neupane, Hairong Wei, Beth Irikura, Maya Paidi, Ning Jiang, Wenli Zhang, Gernot Presting, Aaron Windsor, Rafael Navajas-Perez, Manuel J Torres, Alex F Feltus, Brad Porter, Yingjun Li, Max A Burroughs, Ming-Cheng Luo, Lei Liu, David A Christopher, Stephen M Mount, Paul H Moore, Tak Sugimura, Jiming Jiang, Mary A Schuler, Vikki Friedman, Thomas Mitchell-Olds, Dorothy E Shippen, Claude W Depamphilis, Jeffrey D Palmer, Michael Freeling, Andrew H Paterson, Dennis Gonsalves, Lei Wang, Maqsudul Alam
    posted to genome genomics papaya plant sequence by neils on 2008-04-24 00:39:40 as ** along with 3 people cmzmasek tanghaibao bpcusack
  • Scanning the human genome at kilobase resolution
    Genome Res. (2008)
    by Jun Chen, Yeong C Kim, Yong C Jung, Zhenyu Xuan, Geoff Dworkin, Yanming Zhang, Michael Q Zhang, San M Wang
    posted to bibtex-import dgs genome human tag by neils on 2008-03-28 02:51:51 as **
  • Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Genome Res. (2008)
    by Yao T Huang, Feng C Chen, Hsin L Chen, Trees J Chuang
    posted to bibtex-import evolution hominoid pseudogene transcriptomics by neils on 2008-03-28 02:49:43 as **
  • Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.
    PLoS Comput Biol, Vol. 2, No. 1. (January 2006)
    by T Hou, K Chen, WA McLaughlin, B Lu, W Wang
    posted to abl bioinformatics domain interaction prediction protein-protein sh3 by neils on 2008-01-24 08:10:57 as ** along with 4 people carlescorbi Evangelia biehl jteyra
  • Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by David Kristensen, Matthew R Ward, Andreas M Lisewski, Serkan Erdin, Brian Chen, Viacheslav Fofanov, Marek Kimmel, Lydia Kavraki, Olivier Lichtarge
    posted to bioinformatics function prediction structure enzyme by neils on 2008-01-12 01:38:13 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Inferring domain-domain interactions from protein-protein interactions.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1540-1548.
    by M Deng, S Mehta, F Sun, T Chen
    posted to bioinformatics interaction prediction domain by neils on 2008-01-10 05:26:02 as ** along with 7 people maryee opheliav wnpx Pao-Yang phoenixzxl carlk zdai
  • Predicting gene ontology functions from protein's regional surface structures
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Zhi P Liu, Ling Y Wu, Yong Wang, Luonan Chen, Xiang S Zhang
    posted to function ontology prediction structure protein by neils on 2007-12-11 06:25:59 as ** along with 2 people tjimenez carlk
  • GPS: a comprehensive www server for phosphorylation sites prediction.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187.
    by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
    posted to analysis article-nar article-predikin internet microfilament phosphorylation protein sequence software specificity substrate tissue kinase phosphoprotein by neils on 2007-12-04 03:22:14 as **
  • BRSK2 is activated by cyclic AMP-dependent protein kinase A through phosphorylation at Thr260.
    Biochem Biophys Res Commun, Vol. 347, No. 4. (Sep 2006), pp. 867-871.
    by Zekun Guo, Wenwen Tang, Jian Yuan, Xinya Chen, Bo Wan, Xiuting Gu, Kuntian Luo, Yingli Wang, Long Yu
    posted to activation alignment amp-dependent article-predikin cyclic data enzyme molecular phosphorylation protein protein-serine-threonine sequence threonine amino-acid kinase by neils on 2007-12-04 03:22:12 as **
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