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nedwards library [440 articles]

Neue Artikel in nedwards library ordered by importance.
  • Mass Spectrometry and Computational Proteomics
    Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
    by Vineet Bafna, Knut Reinert
    posted to mass-spectrometry proteomics by nedwards on 2007-08-07 15:23:02 as **** along with 1 person hoangmit
  • Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins.
    Mol Cell Proteomics, Vol. 6, No. 7. (July 2007), pp. 1123-1134.
    by Nuno Bandeira, Karl R R Clauser, Pavel A A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:19:34 as **** along with 2 people jyuh neveaire
  • Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.
    J Proteome Res, Vol. 5, No. 9. (September 2006), pp. 2448-2456.
    by N Wielsch, H Thomas, V Surendranath, P Waridel, A Frank, P Pevzner, A Shevchenko
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:18:50 as **** along with 2 people and 1 group tharris jyuh C. elegans / WormBase
  • Protein identification by spectral networks analysis
    PNAS, Vol. 104, No. 15. (10 April 2007), pp. 6140-6145.
    by Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:18:21 as **** along with 2 people jyuh rph
  • Shotgun protein sequencing by tandem mass spectra assembly.
    Anal Chem, Vol. 76, No. 24. (15 December 2004), pp. 7221-7233.
    by N Bandeira, H Tang, V Bafna, P Pevzner
    posted to proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:17:45 as **** along with 2 people antoniochiao jyuh
  • Assessing bias in experiment design for large-scale mass spectrometry-based quantitative proteomics.
    Mol Cell Proteomics (7 July 2007)
    by Brian Piening, Jeff Whiteaker, Heidi Zhang, Scott A A Schaffer, Daniel Martin, Laura Hohmann, Kelly Cooke, James Olson, Stacey Hansen, Mark R R Flory, Hookeun Lee, Julian Watts, David R R Goodlett, Ruedi Aebersold, Amanda Paulovich, Benno Schwikowski, Amol Prakash
    posted to mass-spectrometry protein-quantitation protein-quantitation-statistics proteomics by nedwards on 2007-08-08 14:17:05 as *** along with 2 people jyuh kentsis
  • A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1902-1909.
    by M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, J Eng, R Fang, C Lin, J Chen, D Goodlett, J Whiteaker, A Paulovich, M McIntosh
    posted to isotope-cluster-modeling mass-spectrometry peak-detection protein-quantitation proteomics proteomics-software by nedwards on 2007-08-07 17:03:04 as *** along with 2 people Gehrke olberd
  • TOPP--the OpenMS proteomics pipeline.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, M Sturm
    posted to mass-spectrometry protein-quantitation proteomics proteomics-software by nedwards on 2007-08-07 17:02:23 as *** along with 2 people moborg Gehrke
  • Improving gene annotation using peptide mass spectrometry
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 231-239.
    by Stephen Tanner, Zhouxin Shen, Julio Ng, Liliana Florea, Roderic Guigo, Steven P Briggs, Vineet Bafna
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:33:42 as *** along with 2 people and 1 group brant wenhan EisenLab
  • Identification of post-translational modifications by blind search of mass spectra
    Nature Biotechnology, Vol. 23, No. 12. (27 November 2005), pp. 1562-1567.
    by Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:32:55 as *** along with 1 person Yanno
  • Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry
    J. Proteome Res., Vol. 4, No. 4. (8 August 2005), pp. 1287-1295.
    by A Frank, S Tanner, V Bafna, P Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:24:50 as *** along with 1 person hoangmit
  • Tissue-Specific Expression and Post-Translational Modification of Histone H3 Variants
    J. Proteome Res., Vol. 7, No. 10. (3 October 2008), pp. 4225-4236.
    by Benjamin A Garcia, Eric C Thomas, Neil L Kelleher, Craig A Mizzen
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 21:42:06 as ** along with 1 person brianb
  • Web and Database Software for Identification of Intact Proteins Using "Top Down" Mass Spectrometry
    Anal. Chem., Vol. 75, No. 16. (15 August 2003), pp. 4081-4086.
    by GK Taylor, YB Kim, AJ Forbes, F Meng, R Mccarthy, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:33:04 as **
  • Top down mass spectrometry of < 60-kDa proteins from Methanosarcina acetivorans using quadrupole FRMS with automated octopole collisionally activated dissociation.
    Molecular & cellular proteomics : MCP, Vol. 5, No. 1. (January 2006), pp. 14-25.
    by SM Patrie, JT Ferguson, DE Robinson, D Whipple, M Rother, WW Metcalf, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:37 as **
  • ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry.
    Nucleic acids research, Vol. 32, No. Web Server issue. (1 July 2004)
    by RD LeDuc, GK Taylor, YB Kim, TE Januszyk, LH Bynum, JV Sola, JS Garavelli, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:17 as **
  • ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by L Zamdborg, RD LeDuc, KJ Glowacz, YB Kim, V Viswanathan, IT Spaulding, BP Early, EJ Bluhm, S Babai, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:07 as **
  • Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data.
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 13 (September 2007)
    by RD Leduc, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:29:55 as **
  • Decoding protein modifications using top-down mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 817-821.
    by Nertila Siuti, Neil L Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:23:26 as ** along with 1 person jyuh
  • mzML: A single, unifying data format for mass spectrometer output
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2776-2777.
    by Eric Deutsch
    posted to proteomics-data-standards proteoimcs by nedwards on 2008-10-06 15:10:30 as ** along with 1 person brianb
  • Improving Protein Identification Sensitivity by Combining MS and MS/MS Information for Shotgun Proteomics Using LTQ-Orbitrap High Mass Accuracy Data
    Anal. Chem., Vol. 80, No. 6. (15 March 2008), pp. 2018-2025.
    by B Lu, A Motoyama, C Ruse, J Venable, JR Yates
    posted to tandem-mass-spectrometry proteomics peptide-identification high-accuracy by nedwards on 2008-10-03 17:15:12 as ** along with 1 person brianb
  • Rapid and Accurate Peptide Identification from Tandem Mass Spectra
    J. Proteome Res. (28 May 2008)
    by Christopher Y Park, Aaron A Klammer, Lukas Ka&#x308;ll, Michael J Maccoss, William S Noble
    posted to tandem-mass-spectrometry proteomics peptide-identification-statistics peptide-identification by nedwards on 2008-10-03 17:12:48 as ** along with 1 person brianb
  • A Fast SEQUEST Cross Correlation Algorithm
    J. Proteome Res. (6 September 2008)
    by Jimmy K Eng, Bernd Fischer, Jonas Grossmann, Michael J Maccoss
    posted to tandem-mass-spectrometry sequest proteomics peptide-identification by nedwards on 2008-10-03 17:08:52 as ** along with 1 person brianb
  • The Deuterator: Software for the determination of backbone amide deuterium levels from H/D exchange MS data
    BMC Bioinformatics, Vol. 8 (16 May 2007), 156.
    by Bruce D Pascal, Michael J Chalmers, Scott A Busby, Christopher C Mader, Mark R Southern, Nicholas F Tsinoremas, Patrick R Griffin
    posted to proteomics hd-exchange by nedwards on 2008-10-03 17:07:22 as ** along with 1 person brianb
  • OpenMS - An open-source software framework for mass spectrometry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole S Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
    posted to proteomics-software proteomics protein-quantitation by nedwards on 2008-10-03 17:06:08 as ** along with 5 people jyuh neils brianb olberd groepl
  • Enhancing Peptide Identification Confidence by Combining Search Methods
    J. Proteome Res. (18 June 2008)
    by Gelio Alves, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 17:03:50 as ** along with 1 person brianb
  • DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring
    J. Proteome Res. (17 July 2008)
    by David L Tabb, Ze-Qiang Ma, Daniel B Martin, Amy-Joan L Ham, Matthew C Chambers
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 17:02:05 as ** along with 1 person brianb
  • Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise.
    Proteomics, Vol. 6, No. 19. (October 2006), pp. 5117-5131.
    by N Mujezinovic, G Raidl, JR Hutchins, JM Peters, K Mechtler, F Eisenhaber
    posted to tandem-mass-spectrometry spectral-processing proteomics isotope-cluster-modeling by nedwards on 2008-10-03 17:01:14 as ** along with 1 person brianb
  • Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches
    J. Proteome Res. (14 August 2008)
    by Wilfred H Tang, Ignat V Shilov, Sean L Seymour
    posted to tandem-mass-spectrometry proteomics peptide-identification-statistics peptide-identification by nedwards on 2008-10-03 16:58:55 as ** along with 1 person brianb
  • Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra
    Mol Cell Proteomics (14 August 2008), M800103-MCP200.
    by Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A Pevzner
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:56:53 as ** along with 1 person brianb
  • Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
    Mol Cell Proteomics, Vol. 7, No. 5. (1 May 2008), pp. 962-970.
    by Markus Brosch, Sajani Swamy, Tim Hubbard, Jyoti Choudhary
    posted to tandem-mass-spectrometry tandem proteomics peptide-identification-statistics peptide-identification mascot by nedwards on 2008-10-03 16:56:18 as ** along with 2 people olberd brianb
  • Improved Sequence Tag Generation Method for Peptide Identification in Tandem Mass Spectrometry
    J. Proteome Res. (12 September 2008)
    by Xia Cao, Alexey I Nesvizhskii
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:53:45 as ** along with 1 person brianb
  • Multi-spectra peptide sequencing and its applications to multistage mass spectrometry
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i416-423.
    by Nuno Bandeira, Jesper V Olsen, Matthias Mann, Pavel A Pevzner
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:51:47 as **
  • How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
    Journal of the American Society for Mass Spectrometry (7 August 2008)
    by Jürgen Cox, Nina C C Hubner, Matthias Mann
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:49:44 as ** along with 2 people jyuh brianb
  • Precision proteomics: The case for high resolution and high mass accuracy
    Proceedings of the National Academy of Sciences (2008)
    by Matthias Mann, Neil L Kelleher
    posted to tandem-mass-spectrometry proteomics high-accuracy by nedwards on 2008-10-03 16:43:42 as ** along with 2 people and 1 group jyuh brianb microbiology_nijmegen
  • Systematic interpretation of genetic interactions using protein networks
    Nature Biotechnology, Vol. 23, No. 5. (05 May 2005), pp. 561-566.
    by Ryan Kelley, Trey Ideker
    posted to systems-biology protein-protein-interactions by nedwards on 2008-10-02 16:31:16 as ** along with 13 people and 2 groups okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt koller massivemayhem patrycjam patrycja_missiuro mingzhi carlk Bioinformatics EBI-regulation
  • High-throughput, quantitative analyses of genetic interactions in E. coli.
    Nature methods (1 August 2008)
    by Athanasios Typas, Robert J J Nichols, Deborah A A Siegele, Michael Shales, Sean R R Collins, Bentley Lim, Hannes Braberg, Natsuko Yamamoto, Rikiya Takeuchi, Barry L L Wanner, Hirotada Mori, Jonathan S S Weissman, Nevan J J Krogan, Carol A A Gross
    posted to systems-biology protein-protein-interactions by nedwards on 2008-10-02 16:30:45 as ** along with 2 people jyuh carlk
  • Genome-Wide Prediction of C. elegans Genetic Interactions
    Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484.
    by Weiwei Zhong, Paul W Sternberg
    posted to systems-biology protein-protein-interactions by nedwards on 2008-10-02 16:29:14 as ** along with 10 people and 3 groups tharris lp2 lfriedl indigoviolet xwbcn nirfriedman patrycjam patrycja_missiuro mingzhi carlk C. elegans / WormBase kdl EisenLab
  • Modelling and analysis of gene regulatory networks
    Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780.
    by Guy Karlebach, Ron Shamir
    posted to systems-biology protein-protein-interactions by nedwards on 2008-09-30 16:03:05 as ** along with 7 people fgibson druvus balicea brianb dakelley jyuh tmmurali
  • Improved microbial gene identification with GLIMMER.
    Nucleic Acids Res, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641.
    by AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
    posted to gene-finders by nedwards on 2008-09-29 02:33:20 as ** along with 4 people ziquje dquest gelack wenhan
  • Open Mass Spectrometry Search Algorithm
    J. Proteome Res., Vol. 3, No. 5. (11 October 2004), pp. 958-964.
    by LY Geer, SP Markey, JA Kowalak, L Wagner, M Xu, DM Maynard, X Yang, W Shi, SH Bryant
    posted to tandem-mass-spectrometry proteomics-software proteomics peptide-identification-statistics peptide-identification omssa by nedwards on 2008-09-29 01:37:41 as **
  • Characterization of Low Abundant Membrane Proteins Using the Protein Sequence Tag Technology
    J. Proteome Res., Vol. 3, No. 5. (11 October 2004), pp. 1073-1081.
    by T Prinz, J Muller, K Kuhn, J Schafer, A Thompson, J Schwarz, C Hamon
    posted to proteomics n-terminal-peptides by nedwards on 2008-09-28 18:33:20 as **
  • Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications
    J. Proteome Res. (12 January 2008)
    by Stephen Swatkoski, Peter Gutierrez, Colin Wynne, Alexey Petrov, Jonathan D Dinman, Nathan Edwards, Catherine Fenselau
    posted to ribosomal-proteins proteomics acid-cleavage by nedwards on 2008-09-28 15:34:42 as **
  • Unbiased Examination of Changes in Plasma Membrane Proteins in Drug Resistant Cancer Cells
    J. Proteome Res., Vol. 4, No. 6. (12 December 2005), pp. 2148-2153.
    by AM Rahbar, C Fenselau
    posted to proteomics multidrug-resistance membrane by nedwards on 2008-09-28 15:19:57 as **
  • Alternative translation initiation generates a novel isoform of insulin-degrading enzyme targeted to mitochondria.
    The Biochemical journal, Vol. 383, No. Pt. 3. (1 November 2004), pp. 439-446.
    by MA Leissring, W Farris, X Wu, DC Christodoulou, MC Haigis, L Guarente, DJ Selkoe
    posted to proteomics n-terminal-peptides by nedwards on 2008-09-28 06:02:35 as **
  • Characterization of intact microorganisms by MALDI mass spectrometry
    Mass Spectrometry Reviews, Vol. 20, No. 4. (2001), pp. 157-171.
    by Catherine Fenselau, Plamen A Demirev
    posted to nopdf microorganism-identification mass-spectrometry maldi by nedwards on 2008-09-28 04:48:52 as **
  • The diversity of acetylated proteins
    Genome Biology, Vol. 3, No. 5. (2002), pp. reviews0006.1-reviews0006.6.
    by Bogdan Polevoda, Fred Sherman
    posted to proteomics n-terminal-peptides by nedwards on 2008-09-26 20:02:31 as **
  • Evidence that approximately eighty per cent of the soluble proteins from Ehrlich ascites cells are Nalpha-acetylated
    J. Biol. Chem., Vol. 251, No. 4. (25 February 1976), pp. 1009-1014.
    by JL Brown, WK Roberts
    posted to proteomics n-terminal-peptides by nedwards on 2008-09-26 20:00:12 as **
  • Targeted analysis of protein termini.
    Journal of proteome research, Vol. 6, No. 12. (December 2007), pp. 4634-4645.
    by W Dormeyer, S Mohammed, B Breukelen, J Krijgsveld, AJ Heck
    posted to proteomics n-terminal-peptides c-terminal-peptides by nedwards on 2008-09-25 22:46:10 as **
  • A simple and highly successful C-terminal sequence analysis of proteins by mass spectrometry
    PROTEOMICS, Vol. 8, No. 8. (2008), pp. 1539-1550.
    by Hiroki Kuyama, Keisuke Shima, Kazuhiro Sonomura, Minoru Yamaguchi, Eiji Ando, Osamu Nishimura, Susumu Tsunasawa
    posted to proteomics c-terminal-peptides by nedwards on 2008-09-25 22:33:13 as **
  • Specific isolation of N-terminal fragments from proteins and their high-fidelity <I>de novo</I> sequencing
    Rapid Communications in Mass Spectrometry, Vol. 21, No. 20. (2007), pp. 3329-3336.
    by Minoru Yamaguchi, Takashi Obama, Hiroki Kuyama, Daisuke Nakayama, Eiji Ando, Taka-Aki Okamura, Norikazu Ueyama, Takashi Nakazawa, Shigemi Norioka, Osamu Nishimura, Susumu Tsunasawa
    posted to proteomics nopdf n-terminal-peptides by nedwards on 2008-09-25 22:20:36 as **
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