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michCs library [40 articles]

Neue Artikel in michCs Bibliothek.
  • Origin of phenotypes: Genes and transcripts.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 682-690.
    by TR Gingeras
    posted to rna by michC on 2008-03-23 00:26:17 as ** along with 8 people and 4 groups bertelsen jyuh balicea xico dchughes ghattem Garamonfok Jporci Bioinformatics WetBiology G4ID Genetics-of-Gambling
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
    posted to no-tag by michC on 2008-02-11 22:17:43 as ** along with 6 people carlk saket dchughes neils grahamc zwang
  • Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
    Genome Biology, Vol. 9, No. 1. (2008)
    by Nora Khaldi, Jerome Collemare, Marc H Lebrun, Kenneth Wolfe
    posted to fungi hgt by michC on 2008-01-31 15:08:39 as *** along with 2 people and 1 group stajich biomcgary Berkeley Mycology
  • Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
    Nature, Vol. 411, No. 6840. (21 June 2001), pp. 940-944.
    by Michael J Stanhope, Andrei Lupas, Michael J Italia, Kristin K Koretke, Craig Volker, James R Brown
    posted to phylogenetics by michC on 2008-01-23 21:17:26 as *****
  • Quantitative assessment of protein function prediction from metagenomics shotgun sequences
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13913-13918.
    by ED Harrington, AH Singh, T Doerks, I Letunic, C von Mering, LJ Jensen, J Raes, P Bork
    posted to bork metagenomics by michC on 2007-09-17 21:23:26 as ** along with 2 people bluto larsjuhljensen
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to bioinformatics blast software by michC on 2007-09-17 21:16:08 as ** along with 40 people and 5 groups benwei ashaytan camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to bork metagenomics tol by michC on 2007-09-17 17:27:18 as read along with 10 people and 5 groups mjetten ana nickluscombe bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes microbiology_nijmegen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • Visualization of comparative genomic analyses by BLAST score ratio | BioMed Central - Mirror @ Uni Potsdam
    posted to bioinformatics software by michC on 2007-07-18 22:20:47 as **
  • Community structure and metabolism through reconstruction of microbial genomes from the environment
    Nature, Vol. 428, No. 6978. (4 March 2004), pp. 37-43.
    by Gene W Tyson, Jarrod Chapman, Philip Hugenholtz, Eric E Allen, Rachna J Ram, Paul M Richardson, Victor V Solovyev, Edward M Rubin, Daniel S Rokhsar, Jillian F Banfield
    posted to amd metagenomics by michC on 2007-07-18 20:06:07 as ** along with 7 people and 2 groups balajis eweaver mabedin azazello beatrizfernandez niallhaslam rvgomes Microbial-Ecology MBLAB
  • Symbiosis insights through metagenomic analysis of a microbial consortium
    Nature (17 September 2006)
    by Tanja Woyke, Hanno Teeling, Natalia N Ivanova, Marcel Hunteman, Michael Richter, Frank O Gloeckner, Dario Boffelli, Iain J Anderson, Kerrie W Barry, Harris J Shapiro, Ernest Szeto, Nikos C Kyrpides, Marc Mussmann, Rudolf Amann, Claudia Bergin, Caroline Ruehland, Edward M Rubin, Nicole Dubilier
    posted to metagenomics symbiosis by michC on 2007-07-16 18:06:02 as read along with 3 people mcox bluto wenhan
  • The genome of Syntrophus aciditrophicus: Life at the thermodynamic limit of microbial growth
    PNAS, Vol. 104, No. 18. (1 May 2007), pp. 7600-7605.
    by Michael J Mcinerney, Lars Rohlin, Housna Mouttaki, Unmi Kim, Rebecca S Krupp, Luis Rios-Hernandez, Jessica Sieber, Christopher G Struchtemeyer, Anamitra Bhattacharyya, John W Campbell, Robert P Gunsalus
    posted to no-tag by michC on 2007-07-13 00:13:23 as **
  • Prediction of effective genome size in metagenomic samples
    Genome Biology, Vol. 8 (15 January 2007), R10.
    by Jeroen Raes, Jan O Korbel, Martin J Lercher, Christian von Mering, Peer Bork
    posted to bork metagenomics by michC on 2007-07-10 20:28:25 as ** along with 1 person and 1 group yas T_lab
  • TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
    BMC Bioinformatics, Vol. 5 (26 October 2004)
    by H Teeling, J Waldmann, T Lombardot, M Bauer, FO Glöckner
    posted to bioinformatics software tetra by michC on 2007-06-13 00:21:59 as read along with 3 people jmeppley bluto wenhan
  • Application of tetranucleotide frequencies for the assignment of genomic fragments.
    Environ Microbiol, Vol. 6, No. 9. (September 2004), pp. 938-947.
    by H Teeling, A Meyerdierks, M Bauer, R Amann, FO Glöckner
    posted to aom bioinformatics metagenomics software tetra by michC on 2007-06-12 19:12:19 as read along with 3 people mcox bluto george_g
  • Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.
    Genome Res, Vol. 8, No. 3. (March 1998), pp. 203-210.
    by H Bono, H Ogata, S Goto, M Kanehisa
    posted to bioinformatics by michC on 2007-06-11 22:47:41 as read along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • The KEGG databases at GenomeNet
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 42-46.
    by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
    posted to bioinformatics software by michC on 2007-06-11 19:46:05 as read along with 1 person opheliav
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    posted to bioinformatics software by michC on 2007-06-11 19:06:39 as read along with 13 people natstreet jyuh aalibes kuhn balajis alexg eweaver tny dullhunk frohike incovoma sgoetz yggdrasil
  • A New Type of Sulfite Reductase, a Novel Coenzyme F420-dependent Enzyme, from the Methanarchaeon Methanocaldococcus jannaschii
    J. Biol. Chem., Vol. 280, No. 46. (18 November 2005), pp. 38776-38786.
    by Eric F Johnson, Biswarup Mukhopadhyay
    posted to archaea s by michC on 2007-05-31 23:37:29 as ***
  • Novel energy metabolism in anaerobic hyperthermophilic archaea: a modified Embden-Meyerhof pathway.
    J Biosci Bioeng, Vol. 93, No. 5. (2002), pp. 441-448.
    by H Sakuraba, T Ohshima
    posted to archaea metabolism by michC on 2007-05-31 23:35:17 as ***
  • The nif Gene Operon of the Methanogenic Archaeon Methanococcus maripaludis
    J. Bacteriol., Vol. 180, No. 6. (15 March 1998), pp. 1504-1511.
    by Peter S Kessler, Carrine Blank, John A Leigh
    posted to methanogenesis n by michC on 2007-05-31 23:33:26 as ***
  • Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol.
    J Proteome Res, Vol. 6, No. 2. (February 2007), pp. 759-771.
    by L Li, Q Li, L Rohlin, U Kim, K Salmon, T Rejtar, RP Gunsalus, BL Karger, JG Ferry
    posted to metaproteomics methanogenesis by michC on 2007-05-31 23:31:50 as read
  • Versatile and open software for comparing large genomes.
    Genome Biol, Vol. 5, No. 2. (2004)
    by S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, SL Salzberg
    posted to bioinformatics software by michC on 2007-05-29 18:46:16 as read along with 3 people Neeperando AaronDarling yoanjacquemin
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to bioinformatics software by michC on 2007-05-24 19:11:51 as *** along with 19 people and 1 group bozdagd gpappas talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen djkt timflutre olympos cjeans wenhan natstreet antonkratz inesdesantiago yoanjacquemin EisenLab
  • Structural and Functional Diversity of the Microbial Kinome.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Natarajan Kannan, Susan S S Taylor, Yufeng Zhai, J Craig C Venter, Gerard Manning
    posted to gos kinases metagenomics by michC on 2007-05-18 23:47:45 as read along with 3 people renatomilani jmeppley neils
  • Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract.
    Appl Environ Microbiol, Vol. 73, No. 4. (February 2007), pp. 1388-1392.
    by ES Klaassens, WM de Vos, EE Vaughan
    posted to gut metaproteomics by michC on 2007-05-18 23:36:24 as read along with 6 people and 3 groups mcox dchughes azazello wenhan nitiniitk barberan G4ID Genetics-of-Gambling MBLAB
  • Obesity alters gut microbial ecology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 11070-11075.
    by RE Ley, F Bäckhed, P Turnbaugh, CA Lozupone, RD Knight, JI Gordon
    posted to 16s gut obesity by michC on 2007-05-18 18:51:41 as read along with 1 person and 1 group marimo MathBio
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
    posted to depth_continuum metagenomics ocean by michC on 2007-05-17 22:10:37 as read along with 9 people and 2 groups mjetten vrich mcox eoghanharr dayjm jmeppley bluto jdelcampo beatrizfernandez microbiology_nijmegen Microbial-Ecology
  • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    Environmental Microbiology, Vol. 9, No. 5. (May 2007), pp. 1162-1175.
    by Mincer, J Tracy, Church, J Matthew, Taylor, Lance Trent, Preston, Christina, Karl, M David, Delong, F Edward
    posted to n by michC on 2007-05-17 22:07:29 as ***** along with 3 people and 2 groups vrich jmeppley kinestetika anammox microbiology_nijmegen
  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e77.
    by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, Craig J Venter
    posted to gos metagenomics by michC on 2007-05-16 21:04:18 as read along with 8 people and 4 groups jmeppley kaspermunch jdelcampo stajich skoch3 beatrizfernandez kinestetika Thaverkamp Bioinformatics Microbial-Ecology Koch_Lab microbiology_nijmegen
  • An obesity-associated gut microbiome with increased capacity for energy harvest
    Nature, Vol. 444, No. 7122., pp. 1027-131.
    by Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon
    posted to gut metagenomics obesity by michC on 2007-05-16 19:59:27 as read along with 5 people and 2 groups GX ana jmeppley srfairclough wenhan structural_bioinformatics Bioinformatics
  • Metagenomic Analysis of the Human Distal Gut Microbiome
    Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359.
    by Steven R Gill, Mihai Pop, Robert T Deboy, Paul B Eckburg, Peter J Turnbaugh, Buck S Samuel, Jeffrey I Gordon, David A Relman, Claire M Fraser-Liggett, Karen E Nelson
    posted to human_gut metagenomics by michC on 2007-05-16 19:55:40 as read along with 15 people and 9 groups Yanno ana dayjm jmeppley dchughes cmm neveaire hcmorton bluto azazello beatrizfernandez wenhan xingxu host-bacteria melissa_wos structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
  • Genomic Islands and the Ecology and Evolution of Prochlorococcus
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1768-1770.
    by Maureen L Coleman, Matthew B Sullivan, Adam C Martiny, Claudia Steglich, Kerrie Barry, Edward F Delong, Sallie W Chisholm
    posted to hgt by michC on 2007-05-16 19:14:50 as *** along with 6 people and 2 groups jmeppley Stenuite bluto jdelcampo cckan beatrizfernandez African_Lakes_Limnology Microbial-Ecology
  • PipMaker---A Web Server for Aligning Two Genomic DNA Sequences
    Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 577-586.
    by Scott Schwartz, Zheng Zhang, Kelly A Frazer, Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller
    posted to bioinformatics software by michC on 2007-05-16 18:51:58 as read along with 3 people wenhan aprasad adijr
  • The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Shibu Yooseph, Granger Sutton, Douglas B B Rusch, Aaron L L Halpern, Shannon J J Williamson, Karin Remington, Jonathan A A Eisen, Karla B B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S S Miller, Huiying Li, Susan T T Mashiyama, Marcin P P Joachimiak, Christopher van Belle, John-Marc M Chandonia, David A A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J J Raphael, Vineet Bafna, Robert Friedman, Steven E E Brenner, Adam Godzik, David Eisenberg, Jack E E Dixon, Susan S S Taylor, Robert L L Strausberg, Marvin Frazier, J Craig C Venter
    posted to gos metagenomics protein_families by michC on 2007-05-09 22:36:52 as read along with 4 people and 2 groups mjetten vrich jmeppley kaspermunch microbiology_nijmegen Bioinformatics
  • A microbial consortium couples anaerobic methane oxidation to denitrification
    Nature, Vol. 440, No. 7086., pp. 918-921.
    by Ashna A Raghoebarsing, Arjan Pol, Katinka T van de Pas-Schoonen, Alfons JP Smolders, Katharina F Ettwig, Irene, Stefan Schouten, Jaap, Huub, Mike SM Jetten, Marc Strous
    posted to aom denitrification by michC on 2007-05-07 18:10:12 as read along with 2 people and 2 groups cursonivel1 kinestetika microbiology_nijmegen cursonivel1
  • New perspectives on anaerobic methane oxidation
    Environmental Microbiology, Vol. 2, No. 5. (2000), pp. 477-484.
    by David L Valentine, William S Reeburgh
    posted to aom by michC on 2007-05-01 21:06:22 as read
  • Methanogenesis: genes, genomes, and who's on first?
    J Bacteriol, Vol. 179, No. 19. (October 1997), pp. 5975-5986.
    by JN Reeve, J Nölling, RM Morgan, DR Smith
    posted to methanogenesis by michC on 2007-05-01 21:01:46 as read
  • Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis
    Science, Vol. 293, No. 5529. (20 July 2001), pp. 484-487.
    by Victoria J Orphan, Christopher H House, Kai-Uwe Hinrichs, Kevin D Mckeegan, Edward F Delong
    posted to anme-2 aom eel_river_basin by michC on 2007-05-01 20:56:06 as read along with 1 person vrich
  • Elucidation of methanogenic coenzyme biosyntheses: from spectroscopy to genomics.
    Natural Product Reports, Vol. 19, No. 2. (April 2002), pp. 133-147.
    by David E Graham, Robert H White
    posted to aom by michC on 2007-05-01 20:52:10 as read
  • The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity
    Genome Res., Vol. 12, No. 4. (1 April 2002), pp. 532-542.
    by James E Galagan, Chad Nusbaum, Alice Roy, Matthew G Endrizzi, Pendexter Macdonald, Will Fitzhugh, Sarah Calvo, Reinhard Engels, Serge Smirnov, Deven Atnoor, Adam Brown, Nicole Allen, Jerome Naylor, Nicole Stange-Thomann, Kurt Dearellano, Robin Johnson, Lauren Linton, Paul Mcewan, Kevin Mckernan, Jessica Talamas, Andrea Tirrell, Wenjuan Ye, Andrew Zimmer, Robert D Barber, Isaac Cann, David E Graham, David A Grahame, Adam M Guss, Reiner Hedderich, Cheryl Ingram-Smith, Craig H Kuettner, Joseph A Krzycki, John A Leigh, Weixi Li, Jinfeng Liu, Biswarup Mukhopadhyay, John N Reeve, Kerry Smith, Timothy A Springer, Lowell A Umayam, Owen White, Robert H White, Everly C de Macario, James G Ferry, Ken F Jarrell, Hua Jing, Alberto J Macario, Ian Paulsen, Matthew Pritchett, Kevin R Sowers, Ronald V Swanson, Steven H Zinder, Eric Lander, William W Metcalf, Bruce Birren
    posted to aom by michC on 2007-05-01 20:39:39 as *** along with 1 person treangen
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