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medic0747s tlb [67 articles]

Neue Publikationen in medic0747s Bibliothek eingetragen unter dem Bezeichner: tlb. You can also see everyone's tlb.
  • CHORAL: a differential geometry approach to the prediction of the cores of protein structures.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3719-3725.
    by RW Montalvão, RE Smith, SC Lovell, TL Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 13:00:24 as ** along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
  • Keynote review: Structural biology and drug discovery
    Drug Discovery Today, Vol. 10, No. 13. (1 July 2005), pp. 895-907.
    by Miles Congreve, Christopher W Murray, Tom L Blundell
    posted to drug tlb by medic0747 on 2007-02-21 12:58:13 as ** along with 1 person and 1 group caporaso biomedical-nlp
  • PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317.
    by SP Gore, DF Burke, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-21 12:34:58 as ** along with 4 people and 1 group bicko Einat skhadar massivemayhem structural_bioinformatics
  • Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
    J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1487-1504.
    by V Chelliah, L Chen, TL Blundell, SC Lovell
    posted to esst tlb by medic0747 on 2007-02-21 12:26:41 as ** along with 8 people and 1 group chrn bicko rabio massivemayhem cat_worth MaggieYe cjeans zwang structural_bioinformatics
  • Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography.
    Structure, Vol. 12, No. 5. (May 2004), pp. 831-838.
    by MA DePristo, PI de Bakker, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-21 12:24:42 as ** along with 4 people and 2 groups ana barry Einat dgront structural_bioinformatics Bioinformatics
  • Advantages of fine-grained side chain conformer libraries
    Protein Eng., Vol. 16, No. 12. (1 December 2003), pp. 963-969.
    by Reshma P Shetty, Paul I de Bakker, Mark A Depristo, Tom L Blundell
    posted to rotamer_libraries tlb by medic0747 on 2007-02-21 12:23:20 as ** along with 2 people apaydin dgront
  • Discrete restraint-based protein modeling and the Calpha-trace problem
    Protein Sci, Vol. 12, No. 9. (1 September 2003), pp. 2032-2046.
    by Mark A Depristo, Paul I de Bakker, Reshma P Shetty, Tom L Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 12:20:18 as ** along with 2 people vavi dgront
  • Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model.
    Proteins, Vol. 51, No. 1. (1 April 2003), pp. 21-40.
    by PI de Bakker, MA DePristo, DF Burke, TL Blundell
    posted to all-stom_statistical_potential loop tlb by medic0747 on 2007-02-21 12:16:38 as **
  • HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.
    Bioinformatics, Vol. 17, No. 8. (August 2001), pp. 748-749.
    by PI de Bakker, A Bateman, DF Burke, RN Miguel, K Mizuguchi, J Shi, H Shirai, TL Blundell
    posted to protein protein_families tlb by medic0747 on 2007-02-21 12:15:05 as **
  • Sequence-structure homology recognition by iterative alignment refinement and comparative modeling.
    Proteins, Vol. Suppl 5 (2001), pp. 92-97.
    by MG Williams, H Shirai, J Shi, HG Nagendra, J Mueller, K Mizuguchi, RN Miguel, SC Lovell, CA Innis, CM Deane, L Chen, N Campillo, DF Burke, TL Blundell, PI de Bakker
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 12:13:37 as ** along with 2 people cdeane sebk
  • Sequence analyses and comparative modeling of fly and worm fibroblast growth factor receptors indicate that the determinants for FGF and heparin binding are retained in evolution.
    FEBS Lett, Vol. 501, No. 1. (13 July 2001), pp. 51-58.
    by HG Nagendra, AE Harrington, NJ Harmer, L Pellegrini, TL Blundell, DF Burke
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 12:12:30 as ** along with 1 person Alan
  • FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257.
    by J Shi, TL Blundell, K Mizuguchi
    posted to esst homology_recognition protein tlb by medic0747 on 2007-02-21 12:10:39 as ** along with 6 people and 1 group miguel bicko analogAI massivemayhem sebk TOchi OPIG
  • SCORE: predicting the core of protein models.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 541-550.
    by CM Deane, Q Kaas, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-21 12:09:28 as ** along with 1 person cdeane
  • Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure.
    Biopolymers, Vol. 59, No. 2. (August 2001), pp. 72-86.
    by J Mendes, HA Nagarajaram, CM Soares, TL Blundell, MA Carrondo
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 12:07:44 as ** along with 1 person carlk
  • CODA: a combined algorithm for predicting the structurally variable regions of protein models.
    Protein Sci, Vol. 10, No. 3. (March 2001), pp. 599-612.
    by CM Deane, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-21 12:06:24 as ** along with 2 people vavi cdeane
  • Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis.
    Protein Eng, Vol. 13, No. 12. (December 2000), pp. 839-847.
    by CA Innis, J Shi, TL Blundell
    posted to eta protein tlb by medic0747 on 2007-02-21 12:05:13 as ** along with 2 people sriram_s RebeccaHamer
  • Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure.
    Bioinformatics, Vol. 16, No. 6. (June 2000), pp. 513-519.
    by DF Burke, CM Deane, TL Blundell
    posted to loop tlb by medic0747 on 2007-02-21 12:03:35 as ** along with 2 people Alan cdeane
  • A novel exhaustive search algorithm for predicting the conformation of polypeptide segments in proteins.
    Proteins, Vol. 40, No. 1. (1 July 2000), pp. 135-144.
    by CM Deane, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-21 12:02:29 as ** along with 3 people vavi thamelry cdeane
  • Carbonyl-carbonyl interactions stabilize the partially allowed Ramachandran conformations of asparagine and aspartic acid.
    Protein Eng, Vol. 12, No. 12. (December 1999), pp. 1025-1028.
    by CM Deane, FH Allen, R Taylor, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-21 12:00:53 as ** along with 1 person cdeane
  • An iterative structure-assisted approach to sequence alignment and comparative modeling.
    Proteins, Vol. Suppl 3 (1999), pp. 55-60.
    by DF Burke, CM Deane, HA Nagarajaram, N Campillo, M Martin-Martinez, J Mendes, F Molina, J Perry, BV Reddy, CM Soares, RE Steward, M Williams, MA Carrondo, TL Blundell, K Mizuguchi
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 11:59:28 as ** along with 2 people cdeane sebk
  • Sequence and structure conservation in a protein core.
    Proteins, Vol. 33, No. 3. (15 November 1998), pp. 358-366.
    by MA Rodionov, TL Blundell
    posted to tlb by medic0747 on 2007-02-21 11:54:32 as ** along with 1 person warlock6x3
  • HOMSTRAD: a database of protein structure alignments for homologous families.
    Protein Sci, Vol. 7, No. 11. (November 1998), pp. 2469-2471.
    by K Mizuguchi, CM Deane, TL Blundell, JP Overington
    posted to database protein_families tlb by medic0747 on 2007-02-21 11:51:08 as ** along with 5 people newton1234 chrn massivemayhem cdeane sebk
  • CAMPASS: a database of structurally aligned protein superfamilies.
    Structure, Vol. 6, No. 9. (15 September 1998), pp. 1087-1094.
    by R Sowdhamini, DF Burke, JF Huang, K Mizuguchi, HA Nagarajaram, N Srinivasan, RE Steward, TL Blundell
    posted to protein_classification tlb by medic0747 on 2007-02-21 11:48:18 as **
  • JOY: protein sequence-structure representation and analysis.
    Bioinformatics, Vol. 14, No. 7. (1998), pp. 617-623.
    by K Mizuguchi, CM Deane, TL Blundell, MS Johnson, JP Overington
    posted to protein tlb by medic0747 on 2007-02-21 11:47:04 as ** along with 6 people chrn laurabailey massivemayhem cdeane sebk TOchi
  • Getting knotted: a model for the structure and activation of Spätzle.
    Trends Biochem Sci, Vol. 23, No. 7. (July 1998), pp. 239-242.
    by K Mizuguchi, JS Parker, TL Blundell, NJ Gay
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 11:44:54 as **
  • Fibroblast growth factor receptors: lessons from the genes
    Trends in Biochemical Sciences, Vol. 23, No. 2. (February 1998), pp. 59-62.
    by David Burke, David Wilkes, Tom L Blundell, Sue Malcolm
    posted to protein tlb by medic0747 on 2007-02-21 11:26:54 as **
  • Predicting the conformational class of short and medium size loops connecting regular secondary structures: application to comparative modelling.
    J Mol Biol, Vol. 267, No. 2. (28 March 1997), pp. 352-367.
    by SD Rufino, LE Donate, LH Canard, TL Blundell
    posted to loop tlb by medic0747 on 2007-02-21 11:22:59 as ** along with 1 person Alan
  • Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables.
    Protein Eng, Vol. 10, No. 1. (January 1997), pp. 7-21.
    by CM Topham, N Srinivasan, TL Blundell
    posted to esst protein protein_stability tlb by medic0747 on 2007-02-21 11:21:31 as ** along with 1 person massivemayhem
  • Analysis, clustering and prediction of the conformation of short and medium size loops connecting regular secondary structures.
    Pac Symp Biocomput (1996), pp. 570-589.
    by SD Rufino, LE Donate, L Canard, TL Blundell
    posted to loop protein protein_modelling tlb by medic0747 on 2007-02-21 11:20:20 as ** along with 2 people vavi Alan
  • Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: a database for modeling and prediction.
    Protein Sci, Vol. 5, No. 12. (December 1996), pp. 2600-2616.
    by LE Donate, SD Rufino, LH Canard, TL Blundell
    posted to loop protein protein_modelling tlb by medic0747 on 2007-02-21 11:17:29 as ** along with 1 person Alan
  • Comparative modelling and analysis of amino acid substitutions suggests that the family of pregnancy-associated glycoproteins includes both active and inactive aspartic proteinases.
    Protein Eng, Vol. 9, No. 10. (October 1996), pp. 849-856.
    by K Guruprasad, TL Blundell, S Xie, J Green, B Szafranska, RJ Nagel, K McDowell, CB Baker, RM Roberts
    posted to protein protein_modelling tlb by medic0747 on 2007-02-21 11:14:00 as **
  • An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins.
    Protein Sci, Vol. 4, No. 3. (March 1995), pp. 506-520.
    by R Sowdhamini, TL Blundell
    posted to protein_classification tlb by medic0747 on 2007-02-21 10:59:10 as ** along with 2 people dimka skhadar
  • Comparative modelling of barley-grain aspartic proteinase: a structural rationale for observed hydrolytic specificity.
    FEBS Lett, Vol. 352, No. 2. (26 September 1994), pp. 131-136.
    by K Guruprasad, K Törmäkangas, J Kervinen, TL Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-20 19:57:07 as **
  • The recognition of protein structure and function from sequence: adding value to genome data.
    Philos Trans R Soc Lond B Biol Sci, Vol. 344, No. 1310. (29 June 1994), pp. 373-381.
    by AC May, MS Johnson, SD Rufino, H Wako, ZY Zhu, R Sowdhamini, N Srinivasan, MA Rodionov, TL Blundell
    posted to protein tlb by medic0747 on 2007-02-20 19:56:10 as **
  • Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. II. Secondary structures.
    J Mol Biol, Vol. 238, No. 5. (20 May 1994), pp. 693-708.
    by H Wako, TL Blundell
    posted to esst protein protein_structure_prediction tlb by medic0747 on 2007-02-20 19:53:42 as **
  • Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes.
    J Mol Biol, Vol. 238, No. 5. (20 May 1994), pp. 682-692.
    by H Wako, TL Blundell
    posted to esst protein protein_structure_prediction tlb by medic0747 on 2007-02-20 19:52:18 as **
  • The prediction and orientation of alpha-helices from sequence alignments: the combined use of environment-dependent substitution tables, Fourier transform methods and helix capping rules.
    Protein Eng, Vol. 7, No. 5. (May 1994), pp. 645-653.
    by D Donnelly, JP Overington, TL Blundell
    posted to esst protein tlb by medic0747 on 2007-02-20 19:49:15 as **
  • Problems and solutions in protein engineering--towards rational design.
    Trends Biotechnol, Vol. 12, No. 5. (May 1994), pp. 145-148.
    by TL Blundell
    posted to protein_design tlb by medic0747 on 2007-02-20 18:49:01 as **
  • Protein structure--based drug design.
    Annu Rev Biophys Biomol Struct, Vol. 23 (1994), pp. 349-375.
    by PJ Whittle, TL Blundell
    posted to drug protein tlb by medic0747 on 2007-02-20 18:45:49 as ** along with 1 person and 2 groups sangeetha Bioinformatics insilicodrug
  • Comparative protein modelling by satisfaction of spatial restraints.
    J Mol Biol, Vol. 234, No. 3. (5 December 1993), pp. 779-815.
    by A Sali, TL Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-20 18:43:57 as ** along with 11 people granujilla dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem sebk
  • Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances.
    J Mol Biol, Vol. 233, No. 3. (5 October 1993), pp. 464-479.
    by BV Reddy, TL Blundell
    posted to protein sse tlb by medic0747 on 2007-02-20 18:42:24 as ** along with 3 people and 2 groups ana barry pansapiens structural_bioinformatics Bioinformatics
  • An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure.
    Protein Eng, Vol. 6, No. 5. (July 1993), pp. 501-512.
    by N Srinivasan, TL Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-20 18:40:06 as **
  • Alignment and searching for common protein folds using a data bank of structural templates.
    J Mol Biol, Vol. 231, No. 3. (5 June 1993), pp. 735-752.
    by MS Johnson, JP Overington, TL Blundell
    posted to protein_modelling tlb by medic0747 on 2007-02-20 18:37:52 as **
  • Catching a common fold.
    Protein Sci, Vol. 2, No. 6. (June 1993), pp. 877-883.
    by TL Blundell, MS Johnson
    posted to protein_families tlb by medic0747 on 2007-02-20 18:35:53 as **
  • Exploration of subsite binding specificity of human cathepsin D through kinetics and rule-based molecular modeling.
    Protein Sci, Vol. 2, No. 2. (February 1993), pp. 264-276.
    by PE Scarborough, K Guruprasad, C Topham, GR Richo, GE Conner, TL Blundell, BM Dunn
    posted to tlb by medic0747 on 2007-02-20 18:32:56 as **
  • Modelling of the lignin peroxidase LIII of Phlebia radiata: use of a sequence template generated from a 3-D structure.
    Protein Eng, Vol. 6, No. 2. (February 1993), pp. 177-182.
    by AM Hoffrén, M Saloheimo, P Thomas, JP Overington, MS Johnson, JK Knowles, TL Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-20 18:31:14 as **
  • Fragment Ranking in Modelling of Protein Structure : Conformationally Constrained Environmental Amino Acid Substitution Tables
    Journal of Molecular Biology, Vol. 229, No. 1. (5 January 1993), pp. 194-220.
    by Christopher M Topham, Alasdair Mcleod, Frank Eisenmenger, John P Overington, Mark S Johnson, Tom L Blundell
    posted to esst protein tlb by medic0747 on 2007-02-20 18:29:13 as ** along with 3 people vavi dgront sebk
  • Modeling alpha-helical transmembrane domains: the calculation and use of substitution tables for lipid-facing residues.
    Protein Sci, Vol. 2, No. 1. (January 1993), pp. 55-70.
    by D Donnelly, JP Overington, SV Ruffle, JH Nugent, TL Blundell
    posted to protein protein_modelling tlb by medic0747 on 2007-02-20 18:27:33 as **
  • Domain flexibility in aspartic proteinases
    Proteins: Structure, Function, and Genetics, Vol. 12, No. 2. (1992), pp. 158-170.
    by Andrej ?ali, B Veerapandian, Jon B Cooper, David S Moss, Theo Hofmann, Tom L Blundell
    posted to protein tlb by medic0747 on 2007-02-20 18:25:53 as **
  • Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds.
    Protein Sci, Vol. 1, No. 2. (February 1992), pp. 216-226.
    by J Overington, D Donnelly, MS Johnson, A Sali, TL Blundell
    posted to esst protein tlb by medic0747 on 2007-02-20 18:22:03 as ** along with 4 people and 1 group vavi bicko Einat massivemayhem structural_bioinformatics
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