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mdstobbes library [23 articles]

Neue Artikel in mdstobbes Bibliothek.
  • IDconverter and IDClight: Conversion and annotation of gene and protein IDs
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreu Alibes, Patricio Yankilevich, Andres Canada, Ramon D Uriarte
    posted to id converter by mdstobbe on 2008-06-30 15:47:07 as ** along with 6 people and 1 group srp33 cerami jyuh aalibes jfr grahamc ParkinsonLab_at_MaRS
  • Gene function prediction using labeled and unlabeled data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Xingming Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara
    posted to unlabeled svm prediction nazanin labeled gene function by mdstobbe on 2008-06-27 12:39:47 as ** along with 2 people tmmurali ironcamel
  • Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Takeyuki Tamura, Tatsuya Akutsu
    posted to svm nazanin localization by mdstobbe on 2008-06-27 12:34:17 as ** along with 2 people neils grahamc
  • 'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
    BMC Bioinformatics, Vol. 8 (29 October 2007), 420.
    by Yao-Qing Shen, Gertraud Burger
    posted to tools nazanin mitochondrial localization combination by mdstobbe on 2008-06-27 12:28:53 as ** along with 1 person iris_2001
  • Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements
    BMC Bioinformatics, Vol. 8 (21 September 2007), 358.
    by Hui Lan, Rachel Carson, Nicholas J Provart, Anthony J Bonner
    posted to prediction nazanin machine learning gene function by mdstobbe on 2008-06-27 12:24:50 as **
  • Biological sequence classification utilizing positive and unlabeled data.
    Bioinformatics (14 March 2008)
    by Yuanyuan Xiao, Mark R R Segal
    posted to sequence nazanin classification by mdstobbe on 2008-04-25 13:54:38 as ** along with 4 people ptrobajo jyuh djkt eckart_bindewald
  • Pathways database system: an integrated system for biological pathways.
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 930-937.
    by L Krishnamurthy, J Nadeau, G Ozsoyoglu, M Ozsoyoglu, G Schaeffer, M Tasan, W Xu
    posted to pathway pathcase by mdstobbe on 2008-04-25 13:08:43 as ** along with 2 people and 1 group kalvala irenas dbk-lab
  • Mining Biological Networks for Unknown Pathways.
    Bioinformatics (30 August 2007)
    by Ali Cakmak, Gultekin Ozsoyoglu
    posted to pathway kegg by mdstobbe on 2008-04-25 13:06:25 as ** along with 7 people jyuh tmmurali bluto shigepong cabbagezs idonaldson acakmak
  • The Edinburgh human metabolic network reconstruction and its functional analysis.
    Mol Syst Biol, Vol. 3 (2007)
    by H Ma, A Sorokin, A Mazein, A Selkov, E Selkov, O Demin, I Goryanin
    posted to network cyc comparison bigg by mdstobbe on 2008-04-24 13:50:26 as ** along with 4 people grahamc fishtank cjeans shung
  • PLoS Computational Biology: Predicting Co-Complexed Protein Pairs from Heterogeneous Data
    posted to complexes kernel by mdstobbe on 2008-04-18 16:08:14 as **
  • Simple and Fast Alignment of Metabolic Pathways by Exploiting Local Diversity.
    Bioinformatics (31 May 2007)
    by Sebastian Wernicke, Florian Rasche
    posted to alignment metapat network by mdstobbe on 2008-04-14 12:37:27 as ** along with 2 people and 2 groups jyuh grahamc Bioinformatics ParkinsonLab_at_MaRS
  • MMG: a probabilistic tool to identify submodules of metabolic pathways
    Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1078-1084.
    by Guido Sanguinetti, Josselin Noirel, Phillip C Wright
    posted to kegg by mdstobbe on 2008-04-11 15:14:59 as ** along with 1 person tmmurali
  • Conserved pathways within bacteria and yeast as revealed by global protein network alignment.
    Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11394-11399.
    by BP Kelley, R Sharan, RM Karp, T Sittler, DE Root, BR Stockwell, T Ideker
    posted to alignment network review by mdstobbe on 2008-04-11 13:18:56 as ** along with 8 people and 1 group carlk okarsligil balajis nuke2005 gurkanbebek mirzazadeh denilw shu Bioinformatics
  • Graemlin: general and robust alignment of multiple large interaction networks.
    Genome Res, Vol. 16, No. 9. (September 2006), pp. 1169-1181.
    by J Flannick, A Novak, BS Srinivasan, HH McAdams, S Batzoglou
    posted to alignment network by mdstobbe on 2008-04-11 07:39:16 as ** along with 2 people and 1 group jfr balajis Bioinformatics
  • From the Cover: Conserved patterns of protein interaction in multiple species.
    Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979.
    by R Sharan, S Suthram, RM Kelley, T Kuhn, S McCuine, P Uetz, T Sittler, RM Karp, T Ideker
    posted to networkblast by mdstobbe on 2008-04-10 12:08:29 as ** along with 11 people and 1 group sza dragonrez okarsligil balajis nuke2005 maryee gurkanbebek koller cjeans iris_2001 maralena Bioinformatics
  • Complex networks theory for analyzing metabolic networks
    Chinese Science Bulletin, Vol. 51, No. 13. (13 July 2006), pp. 1529-1537.
    by Jing Zhao, Hong Yu, Jianhua Luo, Z Cao, Yixue Li
    posted to network properties by mdstobbe on 2008-04-10 10:32:10 as **
  • The small world inside large metabolic networks.
    Proc R Soc Lond B Biol Sci, Vol. 268, No. 1478. (7 September 2001), pp. 1803-1810.
    by A Wagner, DA Fell
    posted to cyc network small-world by mdstobbe on 2008-04-10 10:19:42 as ** along with 5 people and 1 group mague yoh Evangelia athleem pmendes JJJ
  • Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks.
    Bioinformatics (8 May 2006)
    by Syed Asad A Rahman, Dietmar Schomburg
    posted to kegg network properties by mdstobbe on 2008-04-10 10:05:55 as ** along with 6 people and 1 group kuhn tny AbnerCYH bluto Nadam jdiggans Algorithms
  • Influence of metabolic network structure and function on enzyme evolution.
    Genome Biol, Vol. 7, No. 5. (9 May 2006)
    by Dennis Vitkup, Peter Kharchenko, Andreas Wagner
    posted to forster network properties by mdstobbe on 2008-04-10 10:00:41 as ** along with 2 people tny JeremyZucker
  • PLoS Computational Biology: A Peer-Reviewed Open-Access Journal
    by F Matthäus, C Salazar, O Ebenhöh
    posted to kegg network organization by mdstobbe on 2008-04-09 08:09:20 as **
  • A network perspective on the topological importance of enzymes and their phylogenetic conservation
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Wei C Liu, Wen H Lin, Andrew Davis, Ferenc Jordan, Hsih T Yang, Ming J Hwang
    posted to cyc kegg network topology by mdstobbe on 2008-04-09 08:02:55 as ** along with 1 person and 1 group ptrobajo Bioinformatics
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to complexes cyc kegg membership pathway by mdstobbe on 2008-04-09 07:43:17 as ** along with 12 people and 1 group paolomarcatili tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa Katje roys friendpine huali microbiology_nijmegen
  • A case study in pathway knowledgebase verification.
    BMC bioinformatics, Vol. 7 (2006)
    by SA Racunas, NH Shah, NV Fedoroff
    posted to reactome by mdstobbe on 2008-04-08 15:51:55 as **
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