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mdimmics library [151 articles]

Neue Artikel in mdimmics Bibliothek.
  • Predicting Human Interactive Learning by Regret-Driven Neural Networks
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1111-1113.
    by Davide Marchiori, Massimo Warglien
    posted to economics psychology by mdimmic on 2008-03-03 18:57:39 as read along with 5 people and 1 group brian Koh shigepong zwang shivakmr VisionLab
  • Random Forest Models To Predict Aqueous Solubility
    J. Chem. Inf. Model., Vol. 47, No. 1. (22 January 2007), pp. 150-158.
    by DS Palmer, NM O'Boyle, RC Glen, JBO Mitchell
    posted to cheminformatics by mdimmic on 2008-01-15 16:12:42 as ** along with 1 person ucbcjbm
  • Why Are Some Properties More Difficult To Predict than Others? A Study of QSPR Models of Solubility, Melting Point, and Log P
    J. Chem. Inf. Model. (11 January 2008)
    by LD Hughes, DS Palmer, F Nigsch, JBO Mitchell
    posted to cheminformatics by mdimmic on 2008-01-15 16:11:49 as ** along with 3 people ucbcjbm daevans ghula11
  • High-Throughput Lipophilicity Measurement with Immobilized Artificial Membranes
    J. Med. Chem., Vol. 48, No. 7. (7 April 2005), pp. 2571-2576.
    by B Faller, HP Grimm, F Loeuillet-Ritzler, S Arnold, X Briand
    posted to chemistry-analytical by mdimmic on 2008-01-15 16:10:11 as **
  • High-Throughput log P Determination by Ultraperformance Liquid Chromatography: A Convenient Tool for Medicinal Chemists.
    J Med Chem (12 January 2008)
    by Yveline Henchoz, Davy Guillarme, Serge Rudaz, Jean-Luc L Veuthey, Pierre-Alain A Carrupt
    posted to chemistry-analytical by mdimmic on 2008-01-15 16:09:31 as read
  • notes APPLIED BIOINFORMATICS FOR THE IDENTIFICATION OF REGULATORY ELEMENTS
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by Wyeth W Wasserman, Albin Sandelin
    posted to machine-learning review transcription-factor by mdimmic on 2007-12-01 01:22:40 as ** along with 2 people mycitation moborg
  • The Scaffold Tree - Visualization of the Scaffold Universe by Hierarchical Scaffold Classification
    J. Chem. Inf. Model., Vol. 47, No. 1. (22 January 2007), pp. 47-58.
    by A Schuffenhauer, P Ertl, S Roggo, S Wetzel, MA Koch, H Waldmann
    posted to cheminformatics by mdimmic on 2007-11-27 19:40:10 as read along with 3 people jerome dgruiz sithmein
  • Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries.
    J Chem Inf Model (23 November 2007)
    by Peter Ertl, Silvio Roggo, Ansgar Schuffenhauer
    posted to cheminformatics natural-products by mdimmic on 2007-11-27 17:25:39 as read along with 1 person jerome_ucsf_slb
  • Stochastic inhibitor release and binding from single-enzyme molecules
    Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17680-17685.
    by Hans H Gorris, David M Rissin, David R Walt
    posted to nanodetection by mdimmic on 2007-11-09 21:36:31 as ** along with 1 person cactus
  • SuperTarget and Matador: resources for exploring drug-target relationships.
    Nucleic Acids Res (16 October 2007)
    by Stefan Günther, Michael Kuhn, Mathias Dunkel, Monica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, Eduardo Garcia G Urdiales, Andreas Gewiess, Lars Juhl J Jensen, Reinhard Schneider, Roman Skoblo, Robert B B Russell, Philip E E Bourne, Peer Bork, Robert Preissner
    posted to cheminformatics drug-development ligand-docking by mdimmic on 2007-11-08 19:40:40 as read along with 6 people jyuh chad_davis daevans massivemayhem Evangelia larsjuhljensen
  • Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
    BMC Bioinformatics, Vol. 8 (25 August 2007), 310.
    by Luis A Diago, Persy Morell, Longendri Aguilera, Ernesto Moreno
    posted to ligand-docking by mdimmic on 2007-09-17 23:14:05 as **** along with 1 person massivemayhem
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to review sequence-alignment by mdimmic on 2007-09-17 22:59:02 as **** along with 10 people and 2 groups rvosa timflutre stajich zwang cabbagezs groepl yoanjacquemin marti smbe2008 giovenko Bioinformatics FAB-lab
  • Treeness Triangles: Visualizing the Loss of Phylogenetic Signal
    Mol Biol Evol, Vol. 24, No. 9. (1 September 2007), pp. 2029-2039.
    by Wt White, Sf Hills, R Gaddam, Br Holland, David Penny
    posted to phylogenetic-methods by mdimmic on 2007-08-31 17:46:50 as read along with 1 person dparks
  • Single-Molecule, Motion-Based DNA Sequencing Using RNA Polymerase
    Science, Vol. 313, No. 5788. (11 August 2006), 801.
    by William J Greenleaf, Steven M Block
    posted to nanodetection protein-dna-interaction by mdimmic on 2006-11-09 19:28:36 as ***** along with 3 people and 2 groups dayjm dchughes eyliu G4ID Genetics-of-Gambling
  • Capturing expert knowledge with argumentation: a case study in bioinformatics
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 924-933.
    by Benjamin R Jefferys, Lawrence A Kelley, Marek J Sergot, John Fox, Michael J Sternberg
    posted to cheminformatics sar by mdimmic on 2006-09-07 21:50:11 as read along with 3 people and 2 groups vavi marcius eweaver BioinfoCIPF SGU-CIPF
  • Using argumentation for absolute reasoning about the potential toxicity of chemicals.
    J Chem Inf Comput Sci, Vol. 43, No. 5. (t 2003), pp. 1364-1370.
    by PN Judson, CA Marchant, JD Vessey
    posted to cheminformatics sar by mdimmic on 2006-09-07 21:47:58 as read
  • A comprehensive approach to argumentation.
    J Chem Inf Comput Sci, Vol. 43, No. 5. (t 2003), pp. 1356-1363.
    by PN Judson, JD Vessey
    posted to cheminformatics sar by mdimmic on 2006-09-07 21:46:25 as read
  • Tactile Teaching: Exploring Protein Structure/Function Using Physical Models
    Biochemistry and Molecular Biology Education, Vol. 34, No. 4. (1 July 2006), pp. 247-254.
    by Tim Herman, Jennifer Morris, Shannon Colton, Ann Batiza, Michael Patrick, Margaret Franzen, David S Goodsell
    posted to protein teaching by mdimmic on 2006-09-07 20:51:46 as read along with 2 people and 2 groups dchughes alanwolf G4ID Genetics-of-Gambling
  • Prediction of Function Divergence in Protein Families Using the Substitution Rate Variation Parameter Alpha
    Molecular Biology and Evolution, Vol. 23, No. 7. (1 July 2006), pp. 1406-1413.
    by Abhiman, Saraswathi, Daub, O Carsten, Sonnhammer, LL Erik
    posted to functional-shift by mdimmic on 2006-06-13 17:15:24 as ***
  • Structure-based design of a second-generation Lyme disease vaccine based on a C-terminal fragment of Borrelia burgdorferi OspA.
    J Mol Biol, Vol. 350, No. 2. (8 July 2005), pp. 290-299.
    by S Koide, X Yang, X Huang, JJ Dunn, BJ Luft
    posted to epitope-design by mdimmic on 2006-05-22 21:39:14 as ***
  • Enhanced immunogenicity of a conformational epitope of human T-lymphotropic virus type 1 using a novel chimeric peptide
    Vaccine, Vol. 19, No. 9-10. (8 December 2000), pp. 1068-1081.
    by Melanie Frangione-Beebe, Bjorn Albrecht, Naveen Dakappagari, Travis R Rose, Charles L Brooks, Steven P Schwendeman, Michael D Lairmore, Pravin T Kaumaya
    posted to epitope-design by mdimmic on 2006-05-22 21:12:18 as ****
  • Conformational HER-2/neu B-cell Epitope Peptide Vaccine Designed to Incorporate Two Native Disulfide Bonds Enhances Tumor Cell Binding and Antitumor Activities
    J. Biol. Chem., Vol. 280, No. 1. (7 January 2005), pp. 54-63.
    by Naveen K Dakappagari, Kenneth D Lute, Sharad Rawale, Joan T Steele, Stephanie D Allen, Gary Phillips, Todd R Reilly, Pravin T Kaumaya
    posted to epitope-design by mdimmic on 2006-05-22 21:10:20 as read
  • Synthesis, refolding and protective immune responses of a potential antigen for human Respiratory Syncytial Virus vaccine.
    J Pept Res, Vol. 62, No. 1. (July 2003), pp. 27-36.
    by C Klinguer-Hamour, MC Bussat, H Plotnicky, D Velin, N Corvaïa, T Nguyen, A Beck
    posted to epitope-design by mdimmic on 2006-05-19 23:54:46 as ***
  • Codon usage pattern in alpha 2(I) chain domain of chicken type I collagen and its implications for the secondary structure of the mRNA and the synthesis pauses of the collagen.
    Biochem Biophys Res Commun, Vol. 167, No. 2. (16 March 1990), pp. 772-776.
    by M Zama
    posted to codon-usage by mdimmic on 2006-05-12 16:46:37 as **
  • Folding of the MS2 coat protein in Escherichia coli is modulated by translational pauses resulting from mRNA secondary structure and codon usage: a hypothesis.
    J Theor Biol, Vol. 162, No. 2. (21 May 1993), pp. 243-252.
    by Y Guisez, J Robbens, E Remaut, W Fiers
    posted to codon-usage by mdimmic on 2006-05-12 16:45:16 as ***
  • notes Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to ipam protein-interaction by mdimmic on 2005-12-12 18:25:25 as ** along with 11 people and 1 group chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen carlk gjuggler dIEMoSIRIS
  • Closed and open conformations of the lid domain induce different patterns of human pancreatic lipase antigenicity and immunogenicity
    Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Vol. 1753, No. 2. (1 December 2005), pp. 247-256.
    by Hubert Halimi, Josiane De Caro, Frederic Carriere, Alain De Caro
    posted to epitope-design by mdimmic on 2005-11-23 17:45:54 as *****
  • Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences.
    Mol Biol Evol (21 September 2005)
    by Beth Shapiro, Andrew Rambaut, Alexei J J Drummond
    posted to phylogenetic-methods protein-evolution by mdimmic on 2005-11-23 16:33:05 as ****
  • Tracing specific synonymous codon-secondary structure correlations through evolution.
    J Mol Evol, Vol. 56, No. 4. (April 2003), pp. 473-484.
    by M Oresic, M Dehn, D Korenblum, D Shalloway
    posted to codon-usage by mdimmic on 2005-11-11 21:59:35 as **
  • Evidence for an Alpha Helical T Cell Epitope in the C-Terminus of the Main Birch Pollen Allergen Bet V 1
    Biochemical and Biophysical Research Communications, Vol. 223, No. 1. (5 June 1996), pp. 187-192.
    by Andreas J Kungl, Markus Susani, Almut Lindemann, Mischa Machius, Antonie J Visser, Otto Scheiner, Dietrich Kraft, Michael Breitenbach, Manfred Auer
    posted to epitope-design by mdimmic on 2005-11-11 00:09:00 as **
  • NdPASA: a pairwise sequence alignment server for distantly related proteins.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3803-3805.
    by W Li, J Wang, JA Feng
    posted to homolog-detection sequence-alignment by mdimmic on 2005-10-28 00:43:44 as *****
  • Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.
    Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3832-3839.
    by ST Jensen, L Shen, JS Liu
    posted to homolog-detection microarrays by mdimmic on 2005-10-28 00:39:34 as **
  • Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens.
    Proc Natl Acad Sci U S A, Vol. 101, No. 46. (16 November 2004), pp. 16144-16149.
    by SN Bailey, DM Sabatini, BR Stockwell
    posted to high-throughput-screening microarrays by mdimmic on 2005-10-26 22:33:00 as ** along with 1 person and 2 groups dbk streptomyces dbk-lab
  • Mimotopes: realization of an unlikely concept
    Journal of Molecular Recognition, Vol. 13, No. 6. (15 November 2000), pp. 352-359.
    by RH Meloen, WC Puijk, JW Slootstra
    posted to epitope-design review by mdimmic on 2005-10-15 00:08:57 as *****
  • Antigenicity and Immunogenicity of Synthetic Peptides
    Biologicals, Vol. 29, No. 3-4. (September 2001), pp. 209-213.
    by MHV Van Regenmortel
    posted to epitope-design review by mdimmic on 2005-10-14 23:41:10 as read
  • Conformational Preferences of a Peptide Corresponding to the Major Antigenic Determinant of Foot-and- Mouth Disease Virus: Implications for Peptide-Vaccine Approaches
    Archives of Biochemistry and Biophysics, Vol. 341, No. 2. (15 May 1997), pp. 360-369.
    by Gonzalo de Prat-Gay
    posted to epitope-design by mdimmic on 2005-10-13 23:43:30 as ***
  • Analysis of accessible surface of residues in proteins.
    Protein Sci, Vol. 12, No. 7. (July 2003), pp. 1406-1417.
    by L Lins, A Thomas, R Brasseur
    posted to epitope-design protein-interaction by mdimmic on 2005-10-13 23:15:18 as **** along with 1 person ashaytan
  • Potent epitopes derived from Fasciola gigantica cathepsin L1 in peptide-based immunoassay for the serodiagnosis of human fascioliasis
    Diagnostic Microbiology and Infectious Disease, Vol. In Press, Corrected Proof
    by Pewpan M Intapan, Chairat Tantrawatpan, Wanchai Maleewong, Sopit Wongkham, Chaisiri Wongkham, Kunio Nakashima
    posted to epitope-design nematodes by mdimmic on 2005-10-05 00:52:32 as **
  • An in silico method using an epitope motif database for predicting the location of antigenic determinants on proteins in a structural context
    Journal of Molecular Recognition (29 September 2005)
    by Vincent Batori, Esben P Friis, Henrik Nielsen, Erwin L Roggen
    posted to epitope-design by mdimmic on 2005-10-04 23:13:27 as ***
  • A novel approach for investigation of specific and cross-reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients
    Molecular Immunology, Vol. 43, No. 3. (February 2006), pp. 268-278.
    by Diana Mittag, Vincent Batori, Philipp Neudecker, Regina Wiche, Esben P Friis, Barbara K Ballmer-Weber, Stefan Vieths, Erwin L Roggen
    posted to epitope-design by mdimmic on 2005-10-04 22:24:12 as ***
  • Multiple sequence alignments
    Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 261-266.
    by Iain M Wallace, Gordon Blackshields, Desmond G Higgins
    posted to review sequence-alignment by mdimmic on 2005-09-30 22:18:25 as **** along with 2 people bpb nklee
  • Programmed cell death in the root cortex of soybean root necrosis mutants.
    Plant J, Vol. 11, No. 4. (April 1997), pp. 729-745.
    by RM Kosslak, MA Chamberlin, RG Palmer, BA Bowen
    posted to plant-resistance transgenics by mdimmic on 2005-09-27 23:05:09 as ****
  • Predictive estimation of protein linear epitopes by using the program PEOPLE.
    Vaccine, Vol. 18, No. 3-4. (September 1999), pp. 311-314.
    by AJ Alix
    posted to epitope-design by mdimmic on 2005-08-26 01:17:55 as **** along with 1 person leelarcombe
  • Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning.
    J Exp Med, Vol. 180, No. 6. (1 December 1994), pp. 2353-2358.
    by J Hammer, E Bono, F Gallazzi, C Belunis, Z Nagy, F Sinigaglia
    posted to epitope-design by mdimmic on 2005-08-26 00:17:55 as read
  • The role of structure in antibody cross-reactivity between peptides and folded proteins.
    J Mol Biol, Vol. 281, No. 1. (7 August 1998), pp. 183-201.
    by L Craig, PC Sanschagrin, A Rozek, S Lackie, LA Kuhn, JK Scott
    posted to epitope-design by mdimmic on 2005-08-25 22:33:00 as **** along with 1 person leelarcombe
  • Predicting location of continuous epitopes in proteins from their primary structures.
    Methods Enzymol, Vol. 203 (1991), pp. 176-201.
    by JL Pellequer, E Westhof, MH Van Regenmortel
    posted to epitope-design review by mdimmic on 2005-08-25 22:22:24 as **
  • Mapping cross-clade HIV-1 vaccine epitopes using a bioinformatics approach.
    Vaccine, Vol. 21, No. 27-30. (1 October 2003), pp. 4486-4504.
    by AS De Groot, B Jesdale, W Martin, C Saint Aubin, H Sbai, A Bosma, J Lieberman, G Skowron, F Mansourati, KH Mayer
    posted to epitope-design by mdimmic on 2005-08-25 21:45:09 as **
  • Validation of in silico prediction by in vitro immunoserological results of fine epitope mapping on citrate synthase specific autoantibodies.
    Mol Immunol (5 August 2005)
    by Z Nyárády, T Czömpöly, Sz Bősze, G Nagy, A Petrohai, J Pál, F Hudecz, T Berki, P Németh
    posted to epitope-design by mdimmic on 2005-08-25 21:28:15 as **
  • Candidate epitope identification using peptide property models: application to cancer immunotherapy.
    Methods, Vol. 34, No. 4. (December 2004), pp. 460-467.
    by MH Sung, R Simon
    posted to epitope-design review by mdimmic on 2005-08-25 21:14:44 as **** along with 1 person and 1 group okarsligil Bioinformatics
  • Structure-immunogenicity relationships of therapeutic proteins.
    Pharm Res, Vol. 21, No. 6. (June 2004), pp. 897-903.
    by S Hermeling, DJ Crommelin, H Schellekens, W Jiskoot
    posted to epitope-design review by mdimmic on 2005-08-25 21:09:06 as *****
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