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mariakmejias library [50 articles]

Neue Artikel in mariakmejias Bibliothek.
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to semantic_web by mariakmejia on 2008-05-16 16:22:17 as ** along with 2 people aheilbut jyuh
  • Genetic approaches to crop improvement: responding to environmental and population changes.
    Nature reviews. Genetics (13 May 2008)
    by Shin Takeda, Makoto Matsuoka
    posted to plants genetic_regulation by mariakmejia on 2008-05-16 16:16:32 as **
  • How Athila retrotransposons survive in the Arabidopsis genome
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Antonio Marco, Ignacio Marin
    posted to genomics_analysis arabidopsis by mariakmejia on 2008-05-15 02:19:15 as **
  • Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Arthur Hunt, Ruqiang Xu, Balasubrahmanyam Addepalli, Suryadevara Rao, Kevin Forbes, Lisa Meeks, Denghui Xing, Min Mo, Hongwei Zhao, Amrita Bandyopadhyay, Lavanya Dampanaboina, Amanda Marion, Carol Von Lanken, Qingshun Li
    posted to transcription arabidopsis by mariakmejia on 2008-05-15 02:18:34 as **
  • U12 intron positions are more strongly conserved between animals and plants than U2 intron positions
    Biology Direct, Vol. 3, No. 1. (2008)
    by Malay Basu, Wojciech Makalowski, Igor Rogozin, Eugene Koonin
    posted to transcription molecular_evolution by mariakmejia on 2008-05-15 02:17:11 as ** along with 1 person Ema
  • CpG island density and its correlations with genomic features in mammalian genomes
    Genome Biology, Vol. 9 (13 May 2008), R79.
    by Leng Han, Bing Su, Wen-Hsiung Li, Zhongming Zhao
    posted to genomics_analysis by mariakmejia on 2008-05-15 02:12:04 as **
  • Physiology and metabolism 'Tear down this wall'
    Current opinion in plant biology (7 May 2008)
    by Markus Pauly, Kenneth Keegstra
    posted to plants by mariakmejia on 2008-05-15 02:06:43 as **
  • Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication.
    Nature genetics (11 May 2008)
    by Bin Cong, Luz S S Barrero, Steven D D Tanksley
    posted to transcription plants molecular_evolution by mariakmejia on 2008-05-15 02:05:10 as ** along with 1 person imtechnology
  • Pre-mRNA splicing: a complex picture in higher definition.
    Trends in biochemical sciences (8 May 2008)
    by Matthew J J Schellenberg, Dustin B B Ritchie, Andrew M M Macmillan
    posted to transcription by mariakmejia on 2008-05-15 02:02:26 as **
  • Structural evolution of multisubunit RNA polymerases.
    Trends in microbiology (9 May 2008)
    by Finn Werner
    posted to transcription molecular_evolution by mariakmejia on 2008-05-15 02:01:54 as **
  • Molecular evolution of the RNA polymerase II CTD.
    Trends in genetics : TIG (8 May 2008)
    by Rob D D Chapman, Martin Heidemann, Corinna Hintermair, Dirk Eick
    posted to transcription molecular_evolution by mariakmejia on 2008-05-15 02:01:20 as **
  • Circadian clock function in Arabidopsis thaliana: time beyond transcription.
    Trends in cell biology (7 May 2008)
    by Paloma Más
    posted to transcription plants arabidopsis by mariakmejia on 2008-05-15 01:59:39 as **
  • Measuring global credibility with application to local sequence alignment.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by BJ Webb-Robertson, LA McCue, CE Lawrence
    posted to alignment by mariakmejia on 2008-05-11 17:25:16 as **
  • Exploiting and integrating rich features for biological literature classification.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by H Wang, M Huang, S Ding, X Zhu
    posted to semantic_web by mariakmejia on 2008-05-11 17:24:51 as ** along with 1 person maralena
  • Identification of transcription factor contexts in literature using machine learning approaches.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by H Yang, G Nenadic, JA Keane
    posted to semantic_web by mariakmejia on 2008-05-11 17:24:48 as ** along with 1 person maralena
  • New challenges for text mining: mapping between text and manually curated pathways.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by K Oda, JD Kim, T Ohta, D Okanohara, T Matsuzaki, Y Tateisi, J Tsujii
    posted to semantic_web by mariakmejia on 2008-05-11 17:24:15 as ** along with 1 person maralena
  • Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by J Gobeill, I Tbahriti, F Ehrler, A Mottaz, AL Veuthey, P Ruch
    posted to semantic_web by mariakmejia on 2008-05-11 17:24:01 as **
  • RDFScape: Semantic Web meets systems biology.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by A Splendiani
    posted to semantic_web by mariakmejia on 2008-05-11 17:22:58 as ** along with 3 people jyuh bootsy maralena
  • Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites
    BMC Bioinformatics, Vol. 9 (08 May 2008), 232.
    by Jill L Wegrzyn, Thomas M Drudge, Faramarz Valafar, Vivian Hook
    posted to semantic_web by mariakmejia on 2008-05-11 17:22:35 as **
  • Metrics for GO based protein semantic similarity: a systematic evaluation.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by C Pesquita, D Faria, H Bastos, AE Ferreira, AO Falcão, FM Couto
    posted to semantic_web by mariakmejia on 2008-05-11 17:22:11 as **
  • Gene Ontology annotations: what they mean and where they come from.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by DP Hill, B Smith, MS McAndrews-Hill, JA Blake
    posted to semantic_web by mariakmejia on 2008-05-11 17:21:50 as ** along with 2 people dchughes jyuh
  • Ontology-guided data preparation for discovering genotype-phenotype relationships
    BMC Bioinformatics, Vol. 9, No. Suppl 4. (2008)
    by Adrien Coulet, Malika S Tabbone, Pascale Benlian, Amedeo Napoli, Marie D Devignes
    posted to semantic_web by mariakmejia on 2008-05-11 17:19:06 as ** along with 1 person jyuh
  • Terminologies for text-mining; an experiment in the lipoprotein metabolism domain.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by D Alexopoulou, T Wächter, L Pickersgill, C Eyre, M Schroeder
    posted to semantic_web by mariakmejia on 2008-05-11 17:18:35 as ** along with 1 person jyuh
  • A Semantic Web for bioinformatics: goals, tools, systems, applications.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by N Cannata, M Schröder, R Marangoni, P Romano
    posted to semantic_web by mariakmejia on 2008-05-11 17:17:20 as ** along with 2 people jyuh bootsy
  • Novel motifs in amino acid permease genes from Leishmania
    Biochemical and Biophysical Research Communications, Vol. 325, No. 1. (3 December 2004), pp. 353-366.
    by Martin Akerman, Pninit Shaked-Mishan, Salam Mazareb, Hanne Volpin, Dan Zilberstein
    posted to leishmaniasis by mariakmejia on 2008-05-06 00:27:22 as ** along with 1 person svdate
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:26:23 as ** along with 21 people and 8 groups brant alokm tuck chad_davis lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • DBD: a transcription factor prediction database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by SK Kummerfeld, SA Teichmann
    posted to genetic_regulation database by mariakmejia on 2008-05-06 00:26:14 as ** along with 4 people and 1 group troels_marstrand gpalidwor nickluscombe nklee EBI-regulation
  • Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals
    Nature, Vol. aop, No. current. (27 February 2005)
    by Xiaohui Xie, Jun Lu, EJ Kulbokas, Todd R Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S Lander, Manolis Kellis
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:23:59 as ** along with 22 people and 4 groups snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena Bioinformatics EisenLab microRNA EBI-regulation
  • An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression.
    Genome Res, Vol. 14, No. 10B. (October 2004), pp. 2041-2047.
    by DN Messina, J Glasscock, W Gish, M Lovett
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:23:33 as ** along with 3 people and 1 group tabu nickluscombe ale EBI-regulation
  • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
    BMC Bioinformatics, Vol. 5 (18 March 2004)
    by F Gao, BC Foat, HJ Bussemaker
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:23:22 as ** along with 6 people and 1 group tmmurali tuck gpalidwor nickluscombe koller Ao_Li2007 EBI-regulation
  • Integrated assessment and prediction of transcription factor binding.
    PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006)
    by A Beyer, C Workman, J Hollunder, D Radke, U Möller, T Wilhelm, T Ideker
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:23:09 as ** along with 3 people and 1 group nickluscombe aswin koller EBI-regulation
  • REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3487-3490.
    by C Roven, HJ Bussemaker
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:23:07 as ** along with 3 people and 1 group dquest nickluscombe heliopais EBI-regulation
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:21:50 as ** along with 6 people and 2 groups indigoviolet dpollard samal nickluscombe olympos emptyhb EisenLab EBI-regulation
  • Functional analysis of human and chimpanzee promoters.
    Genome Biol, Vol. 6, No. 7. (2005)
    by F Heissig, J Krause, J Bryk, P Khaitovich, W Enard, S Pääbo
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:20:47 as ** along with 1 person and 1 group nickluscombe EBI-regulation
  • Multiple-laboratory comparison of microarray platforms
    Nature Methods, Vol. 2, No. 5. (21 April 2005), pp. 345-350.
    by Rafael A Irizarry, Daniel Warren, Forrest Spencer, Irene F Kim, Shyam Biswal, Bryan C Frank, Edward Gabrielson, Joe GN Garcia, Joel Geoghegan, Gregory Germino, Constance Griffin, Sara C Hilmer, Eric Hoffman, Anne E Jedlicka, Ernest Kawasaki, Francisco Martínez-Murillo, Laura Morsberger, Hannah Lee, David Petersen, John Quackenbush, Alan Scott, Michael Wilson, Yanqin Yang, Shui Q Ye, Wayne Yu
    posted to microarrays by mariakmejia on 2008-05-06 00:17:47 as ** along with 4 people and 1 group textoris balajis yoh nickluscombe EBI-regulation
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:16:42 as ** along with 15 people and 8 groups icases ana chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Transcriptome network component analysis with limited microarray data.
    Bioinformatics (9 June 2006)
    by Simon J J Galbraith, Linh M M Tran, James C C Liao
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:15:52 as ** along with 3 people and 1 group snuppepuppan jyuh kengg Plantandetc
  • Stochastic model of transcription factor-regulated gene expression.
    Phys Biol, Vol. 3, No. 3. (September 2006), pp. 200-208.
    by R Karmakar, I Bose
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:15:44 as ** along with 1 person and 1 group kengg Plantandetc
  • The genome of the kinetoplastid parasite, Leishmania major.
    Science, Vol. 309, No. 5733. (15 July 2005), pp. 436-442.
    by AC Ivens, CS Peacock, EA Worthey, L Murphy, G Aggarwal, M Berriman, E Sisk, MA Rajandream, E Adlem, R Aert, A Anupama, Z Apostolou, P Attipoe, N Bason, C Bauser, A Beck, SM Beverley, G Bianchettin, K Borzym, G Bothe, CV Bruschi, M Collins, E Cadag, L Ciarloni, C Clayton, RM Coulson, A Cronin, AK Cruz, RM Davies, J De Gaudenzi, DE Dobson, A Duesterhoeft, G Fazelina, N Fosker, AC Frasch, A Fraser, M Fuchs, C Gabel, A Goble, A Goffeau, D Harris, C Hertz-Fowler, H Hilbert, D Horn, Y Huang, S Klages, A Knights, M Kube, N Larke, L Litvin, A Lord, T Louie, M Marra, D Masuy, K Matthews, S Michaeli, JC Mottram, S Müller-Auer, H Munden, S Nelson, H Norbertczak, K Oliver, S O'neil, M Pentony, TM Pohl, C Price, B Purnelle, MA Quail, E Rabbinowitsch, R Reinhardt, M Rieger, J Rinta, J Robben, L Robertson, JC Ruiz, S Rutter, D Saunders, M Schäfer, J Schein, DC Schwartz, K Seeger, A Seyler, S Sharp, H Shin, D Sivam, R Squares, S Squares, V Tosato, C Vogt, G Volckaert, R Wambutt, T Warren, H Wedler, J Woodward, S Zhou, W Zimmermann, DF Smith, JM Blackwell, KD Stuart, B Barrell, PJ Myler
    posted to leishmaniasis by mariakmejia on 2008-05-06 00:14:10 as ** along with 1 person and 1 group nickluscombe EBI-regulation
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to genetic_regulation by mariakmejia on 2008-05-06 00:11:59 as ** along with 12 people and 2 groups jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais EBI-regulation Plantandetc
  • Genetic regulation of root hair development in Arabidopsis thaliana: a network model.
    J Theor Biol, Vol. 204, No. 3. (7 June 2000), pp. 311-326.
    by L Mendoza, ER Alvarez-Buylla
    posted to plants genetic_regulation by mariakmejia on 2008-05-06 00:10:39 as ** along with 2 people and 1 group Happybene kengg Plantandetc
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to blast by mariakmejia on 2008-05-06 00:09:06 as ** along with 37 people and 4 groups knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to dna_sequencing by mariakmejia on 2008-05-06 00:08:06 as ** along with 8 people jfr Neeperando jmeppley dchughes djkt GustavoLacerda niallhaslam urgi
  • CAMERA: A Community Resource for Metagenomics
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e75.
    by Rekha Seshadri, Saul A Kravitz, Larry Smarr, Paul Gilna, Marvin Frazier
    posted to genomics_analysis by mariakmejia on 2008-05-06 00:07:52 as ** along with 2 people and 1 group jmeppley Thaverkamp Microbial-Ecology
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
    posted to genomics_analysis by mariakmejia on 2008-05-04 21:17:53 as ** along with 5 people and 2 groups treangen azazello wenhan urgi tpreeprem MBLAB gatech-compgenomics
  • Pyrobayes: an improved base caller for SNP discovery in pyrosequences
    Nature Methods, Vol. 5, No. 2. (13 January 2008), pp. 179-181.
    by Aaron R Quinlan, Donald A Stewart, Michael P Strömberg, Gábor T Marth
    posted to dna_sequencing by mariakmejia on 2008-05-04 21:17:00 as ** along with 3 people and 1 group jyuh jmeppley azazello gatech-compgenomics
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1394-1403.
    by AC Darling, B Mau, FR Blattner, NT Perna
    posted to genomics_analysis by mariakmejia on 2008-05-04 19:37:14 as ** along with 5 people and 1 group operon catmat AaronDarling leelarcombe azazello gatech-compgenomics
  • Genome Sequence Assembly:Algorithms and Issues
    Computer, Vol. 35, No. 7. (July 2002), pp. 47-54.
    by Mihai Pop, Steven L Salzberg, Martin Shumway
    posted to dna_sequencing by mariakmejia on 2008-05-02 16:50:24 as ***
  • Pyrosequencing sheds light on DNA sequencing.
    Genome Res, Vol. 11, No. 1. (January 2001), pp. 3-11.
    by M Ronaghi
    posted to dna_sequencing by mariakmejia on 2008-05-02 16:36:27 as *** along with 1 person and 1 group tpreeprem gatech-compgenomics
  • Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrej N Spiess, Caroline Feig, Christian Ritz
    posted to pcr_real-time by mariakmejia on 2008-05-02 15:47:58 as ** along with 1 person kengg
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