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klucks library [56 articles]

Neue Artikel in klucks Bibliothek.
  • Identification of protein interaction partners and protein-protein interaction sites
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Sophie Sacquin-Mora, Alessandra Carbone, Richard Lavery
    posted to docking ppi prediction by kluck on 2008-08-20 10:46:04 as ** along with 1 person jteyra
  • An integrative approach for predicting interactions of protein regions
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41.
    by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to domain linear motifs ppi prediction by kluck on 2008-08-11 10:32:17 as *** along with 2 people neils zwang
  • Impacts of protein-protein interaction domains on organism and network complexityPPI domains and organism/network complexity.
    Genome research (7 August 2008)
    by Kai Xia, Zheng Fu, Lei Hou, Jing-Dong J D Han
    posted to domain htp network ppi protein by kluck on 2008-08-11 10:30:57 as ** along with 2 people grahamc bpcusack
  • Probing the Extent of Randomness in Protein Interaction Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000114.
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to network ppi randomness by kluck on 2008-07-28 08:16:45 as *** along with 1 person Ema
  • Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration.
    Bioinformatics (Oxford, England) (29 May 2008)
    by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N Robinson
    posted to enrichment go by kluck on 2008-07-28 08:14:55 as read along with 3 people dullhunk barriot jyuh
  • The spindle checkpoint functions of Mad3 and Mad2 depend on a Mad3 KEN box-mediated interaction with Cdc20-APC/C.
    The Journal of biological chemistry (13 June 2008)
    by Matylda Sczaniecka, Anna Feoktistova, Karen M M May, Jun-Song S Chen, Julie Blyth, Kathleen L L Gould, Kevin G G Hardwick
    posted to apcc kenbox by kluck on 2008-06-19 08:36:55 as read along with 1 person janasont
  • Biological function in a non-native partially folded state of a protein
    The EMBO Journal, Vol. aop, No. current. (01 May 2008)
    by Francesco Bemporad, Joerg Gsponer, Harri I Hopearuoho, Georgia Plakoutsi, Gianmarco Stati, Massimo Stefani, Niccolo Taddei, Michele Vendruscolo, Fabrizio Chiti
    posted to disorder function iup protein by kluck on 2008-06-18 11:27:27 as ***
  • Pseudosubstrate Inhibition of APCCdh1 by Acm1: Regulation by Proteolysis and Cdc28 Phosphorylation.
    Molecular and cellular biology (2 June 2008)
    by Denis Ostapenko, Janet L L Burton, Ruiwen Wang, Mark J J Solomon
    posted to apc cell cycle dbox kenbox ubiquitin by kluck on 2008-06-11 08:53:15 as **
  • Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 653-665.
    by L Jin, A Williamson, S Banerjee, I Philipp, M Rape
    posted to apcc ubiquitin by kluck on 2008-06-04 14:04:02 as **
  • DeTEKting ubiquitination of APC/C substrates.
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 570-572.
    by AL Haas, KD Wilkinson
    posted to apcc cell cycle linear motifs by kluck on 2008-06-04 14:03:20 as read
  • Quantification of the elevated rate of domain rearrangements in metazoa.
    J Mol Biol, Vol. 372, No. 5. (5 October 2007), pp. 1337-1348.
    by D Ekman, AK Björklund, A Elofsson
    posted to arrangement domain evolution by kluck on 2008-05-22 08:45:26 as ** along with 2 people cjeans gulkur
  • Domain deletions and substitutions in the modular protein evolution.
    FEBS J, Vol. 273, No. 9. (May 2006), pp. 2037-2047.
    by J Weiner, F Beaussart, E Bornberg-Bauer
    posted to domain evolution by kluck on 2008-05-22 08:36:45 as ** along with 1 person choonpeng
  • Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN)
    Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1834-1836.
    by Francois Beaussart, January Weiner, Erich Bornberg-Bauer
    posted to aidan annotation arrangement domain by kluck on 2008-05-22 08:30:18 as ** along with 2 people january gulkur
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
    posted to function prediction sequence structure by kluck on 2008-05-22 08:14:45 as ** along with 9 people skhadar neils cjeans zwang Evangelia hpaces Ema renatomilani janasont
  • CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e232.
    by Oliver C Redfern, Andrew Harrison, Tim Dallman, Frances M Pearl, Christine A Orengo
    posted to cathedral domain prediction structure by kluck on 2008-05-22 08:05:53 as ** along with 2 people Ema dgront
  • Whole genome protein domain analysis using a new method for domain clustering
    Computers & Chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 333-340.
    by Jérome Gouzy, Florence Corpet, Daniel Kahn
    posted to domain evolution mkdom by kluck on 2008-05-22 07:55:09 as ***
  • Comparative analysis of five protein-protein interaction corpora
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski
    posted to htp ppi prediction scoring text-mining by kluck on 2008-05-13 10:50:04 as *** along with 5 people and 2 groups laughcry vlachmore aprildh31 anthropomorphism gilesc BioInfPDL Proteasome
  • Assessment of the probabilities for evolutionary structural changes in protein folds.
    Bioinformatics (Oxford, England), Vol. 23, No. 7. (1 April 2007), pp. 832-841.
    by J Viksna, D Gilbert
    posted to evolution mejc modul protein by kluck on 2008-05-13 10:43:01 as **
  • Structural disorder serves as a weak signal for intracellular protein degradation.
    Proteins (14 November 2007)
    by P Tompa, J Prilusky, I Silman, J L L Sussman
    posted to dbox degradation disorder htp iup kenbox motifs ppi protein by kluck on 2008-05-05 15:09:47 as *** along with 4 people camster chad_davis higueruelo allmensch
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to extracellular htp ppi protein proteomics by kluck on 2008-04-29 09:34:52 as *** along with 9 people tmmurali neils Dualsystems grahamc zwang jyuh carlk niallhaslam paolomarcatili
  • From pull-down data to protein interaction networks and com-plexes with biological relevance.
    Bioinformatics (26 February 2008)
    by Bing Zhang, Byung-Hoon H Park, Tatiana Karpinets, Nagiza F F Samatova
    posted to complex core htp mass network ppi prediction protein spectrometry by kluck on 2008-04-25 08:25:13 as ** along with 4 people jyuh chad_davis grahamc carlk
  • A careful disorderliness in the proteome: Sites for interaction and targets for future therapies.
    FEBS Lett (16 February 2008)
    by Robert B B Russell, Toby J J Gibson
    posted to iup linear motifs ppi protein review by kluck on 2008-04-23 08:32:32 as read along with 5 people jyuh Evangelia robrussell higueruelo chad_davis
  • The MoVIN server for the analysis of protein interaction networks.
    BMC bioinformatics, Vol. 9 Suppl 2 (2008)
    by P Marcatili, G Bussotti, A Tramontano
    posted to htp motifs network ppi prediction protein proteomics by kluck on 2008-04-21 07:34:49 as *** along with 3 people maralena carlk jyuh
  • Intrinsic disorder in the Protein Data Bank.
    Journal of biomolecular structure & dynamics, Vol. 24, No. 4. (February 2007), pp. 325-342.
    by T Le Gall, PR Romero, MS Cortese, VN Uversky, AK Dunker
    posted to disorder iup pdb protein by kluck on 2008-04-17 08:55:45 as ***
  • The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.
    J Mol Biol, Vol. 347, No. 4. (8 April 2005), pp. 827-839.
    by Z Dosztányi, V Csizmók, P Tompa, I Simon
    posted to disorder iup iupred prediction protein by kluck on 2008-04-17 08:46:03 as read along with 1 person chad_davis
  • IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3433-3434.
    by Z Dosztányi, V Csizmok, P Tompa, I Simon
    posted to disorder iup iupred prediction protein by kluck on 2008-04-17 08:44:38 as read along with 1 person chad_davis
  • Characterization and prediction of protein interfaces to infer protein-protein interaction networks.
    Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 67-76.
    by O Keskin, N Tuncbag, A Gursoy
    posted to network ppi prediction protein by kluck on 2008-04-10 16:46:11 as ***
  • Chaperones as integrators of cellular networks: changes of cellular integrity in stress and diseases.
    IUBMB life, Vol. 60, No. 1. (January 2008), pp. 10-18.
    by R Palotai, MS Szalay, P Csermely
    posted to complex network ppi protein proteomics response stress by kluck on 2008-04-03 12:20:01 as **
  • Walking the Interactome for Prioritization of Candidate Disease Genes
    The American Journal of Human Genetics, Vol. In Press, Corrected Proof
    by Sebastian Kohler, Sebastian Bauer, Denise Horn, Peter N Robinson
    posted to disease genes htp network ppi protein proteomics by kluck on 2008-03-31 07:11:54 as ** along with 4 people jfr daed jyuh raiyar
  • Gene3D: comprehensive structural and functional annotation of genomes.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by C Yeats, J Lees, A Reid, P Kellam, N Martin, X Liu, C Orengo
    posted to annotation go network ppi protein by kluck on 2008-03-18 14:29:45 as ** along with 2 people grottenolm jyuh
  • Structural deformation upon protein-protein interaction: a structural alphabet approach
    BMC Structural Biology, Vol. 8 (28 February 2008), 12.
    by Juliette Martin, Leslie Regad, Helene Lecornet, Anne-Claude Camproux
    posted to complex induced-fit ppi protein by kluck on 2008-03-03 10:39:16 as read
  • Oxygen content of transmembrane proteins over macroevolutionary time scales
    Nature (20 December 2006)
    by Claudia Acquisti, Jürgen Kleffe, Sinéad Collins
    posted to mejc protein by kluck on 2008-03-03 09:03:00 as read along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • PRINCESS: a PRotein INteraction Confidence Evaluation System with multiple data Sources.
    Mol Cell Proteomics (29 January 2008)
    by Dong Li, Wanlin Liu, Zhongyang Liu, Jian Wang, Qijun Liu, Yunping Zhu, Fuchu He
    posted to htp network ppi protein scoring by kluck on 2008-02-22 11:14:24 as ** along with 2 people jyuh phoenixzxl
  • Evidence of probabilistic behaviour in protein interaction networks.
    BMC Syst Biol, Vol. 2, No. 1. (31 January 2008)
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to network ppi probability protein by kluck on 2008-02-22 11:11:23 as *** along with 1 person wilbur
  • Assessing the Exceptionality of Network Motifs.
    J Comput Biol (7 February 2008)
    by F Picard, J-J J Daudin, M Koskas, S Schbath, S Robin
    posted to htp linear motifs network ppi protein by kluck on 2008-02-22 11:06:32 as ** along with 2 people tmmurali maralena
  • Integration of genomic data for inferring protein complexes from global protein-protein interaction networks.
    IEEE Trans Syst Man Cybern B Cybern, Vol. 38, No. 1. (February 2008), pp. 5-16.
    by H Zheng, H Wang, DH Glass
    posted to complex htp network ppi protein by kluck on 2008-02-22 11:01:48 as ***
  • Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset.
    Nucleic Acids Res (14 February 2008)
    by Jie Guo, Xiaomei Wu, Da-Yong Y Zhang, Kui Lin
    posted to htp linear motifs network ppi protein scoring by kluck on 2008-02-22 10:59:52 as **** along with 4 people tmmurali neils stef_lise paolomarcatili
  • The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Richard Cote, Philip Jones, Rolf Apweiler, Henning Hermjakob
    posted to go ontology webservice by kluck on 2008-02-13 13:31:56 as ** along with 1 person dullhunk
  • The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase.
    In Silico Biol, Vol. 4, No. 1. (2004), pp. 5-6.
    by E Camon, D Barrell, V Lee, E Dimmer, R Apweiler
    posted to annotation go ontology by kluck on 2008-02-12 13:06:53 as read
  • Co-evolution of transcriptional and post-translational cell-cycle regulation
    Nature (27 September 2006)
    by Lars J Jensen, Thomas S Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork
    posted to evolution linear mejc motifs by kluck on 2008-02-05 15:42:58 as read along with 7 people and 1 group JAShapiro adepace koller olympos ccr cjeans larsjuhljensen EisenLab
  • SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3771-3774.
    by C Ramu
    posted to motifs sirw by kluck on 2008-02-05 15:40:25 as read
  • The Gene Ontology (GO) project in 2006.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by
    posted to go by kluck on 2008-02-05 15:36:20 as read along with 1 person dullhunk
  • Destruction box-dependent degradation of aurora B is mediated by the anaphase-promoting complex/cyclosome and Cdh1.
    Cancer Res, Vol. 65, No. 19. (1 October 2005), pp. 8730-8735.
    by S Stewart, G Fang
    posted to aurorab dbox kinase by kluck on 2008-02-05 15:17:36 as read
  • The anaphase promoting complex/cyclosome: a machine designed to destroy
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 9. (09 August 2006), pp. 644-656.
    by Jan-Michael Peters
    posted to apc complex dbox by kluck on 2008-02-05 15:12:20 as read
  • The anaphase-promoting complex: a key factor in the regulation of cell cycle.
    Oncogene, Vol. 24, No. 3. (13 January 2005), pp. 314-325.
    by A Castro, C Bernis, S Vigneron, JC Labbé, T Lorca
    posted to apc complex dbox by kluck on 2008-02-05 15:09:32 as read
  • Gene Ontology annotation quality analysis in model eukaryotes.
    Nucleic Acids Res (10 January 2008)
    by Teresia J J Buza, Fiona M M McCarthy, Nan Wang, Susan M M Bridges, Shane C C Burgess
    posted to go ontology by kluck on 2008-02-04 11:15:28 as read along with 2 people jyuh carlk
  • Population proteomics: Investigation of protein diversity in human populations.
    Proteomics (21 January 2008)
    by Dobrin Nedelkov
    posted to diversity mejc protein proteomics by kluck on 2008-01-31 09:35:14 as read along with 1 person jyuh
  • Genomics, biogeography, and the diversification of placental mammals
    Proceedings of the National Academy of Sciences, Vol. 104, No. 36. (4 September 2007), pp. 14395-14400.
    by Derek E Wildman, Monica Uddin, Juan C Opazo, Guozhen Liu, Vincent Lefort, Stephane Guindon, Olivier Gascuel, Lawrence I Grossman, Roberto Romero, Morris Goodman
    posted to mejc by kluck on 2008-01-28 08:54:30 as read along with 2 people and 2 groups aprasad dchughes G4ID Genetics-of-Gambling
  • A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 202-208.
    by Changyu Shen, Zhiping Wang, Ganesh Shankar, Xiang Zhang, Lang Li
    posted to complex htp protein scoring by kluck on 2008-01-24 12:50:21 as **** along with 1 person jyuh
  • Basic mechanisms of high-risk human papillomavirus-induced carcinogenesis: Roles of E6 and E7 proteins
    Cancer Science, Vol. 98, No. 10. (October 2007), pp. 1505-1511.
    by Narisawa-Saito, Mako, Kiyono, Tohru
    posted to e6 e7 papillomavirus pv review by kluck on 2008-01-24 08:05:49 as ****
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