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kaarsinogens protein_structure [27 articles]

Neue Publikationen in kaarsinogens Bibliothek eingetragen unter dem Bezeichner: protein_structure. You can also see everyone's protein_structure.
  • PISCES: a protein sequence culling server.
    Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1589-1591.
    by G Wang, RL Dunbrack
    posted to protein_structure by kaarsinogen on 2008-04-20 18:45:27 as ** along with 8 people and 2 groups barry aalibes j3xucite dgront blackbart mloewer ezralanglois chgjb structural_bioinformatics Bioinformatics
  • Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.
    J Mol Biol, Vol. 285, No. 4. (29 January 1999), pp. 1735-1747.
    by JM Word, SC Lovell, JS Richardson, DC Richardson
    posted to protein_structure by kaarsinogen on 2008-04-02 17:34:43 as ** along with 4 people and 2 groups jwm Alan j3xucite blackbart Radiation_Damage Stressosome
  • The Quickhull Algorithm for Convex Hulls
    ACM Transactions on Mathematical Software, Vol. 22, No. 4. (1996), pp. 469-483.
    by Bradford C Barber, David P Dobkin, Hannu Huhdanpaa
    posted to protein_structure by kaarsinogen on 2008-03-24 19:19:35 as ** along with 2 people yushkevich tigarmo
  • Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool.
    J Mol Biol, Vol. 267, No. 5. (18 April 1997), pp. 1268-1282.
    by MJ Bower, FE Cohen, RL Dunbrack
    posted to protein_structure by kaarsinogen on 2008-03-24 19:04:07 as ** along with 5 people and 1 group carlk jwm nknii blackbart mijam TCR_Signaling
  • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to protein_structure by kaarsinogen on 2008-03-24 18:26:31 as ** along with 14 people mschofie lna chad_davis wouterboomsma penka ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb
  • PISCES: recent improvements to a PDB sequence culling server.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by G Wang, RL Dunbrack
    posted to protein_structure by kaarsinogen on 2008-03-17 18:10:49 as ** along with 4 people chad_davis bicko blackbart chgjb
  • Connecting protein structure with predictions of regulatory sites.
    Proc Natl Acad Sci U S A (16 April 2007)
    by Alexandre V V Morozov, Eric D D Siggia
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2007-06-01 22:37:08 as *** along with 4 people and 2 groups ana aalibes johncumbers lusk structural_bioinformatics Bioinformatics
  • DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces
    Nucl. Acids Res., Vol. 35, No. 5. (12 March 2007), pp. 1465-1477.
    by Harianto Tjong, Huan-Xiang Zhou
    posted to dna_binding machine_learning protein-dna_interaction protein_descriptors protein_structure transcription_factor by kaarsinogen on 2007-06-01 21:15:06 as *** along with 1 person medic0747
  • An overview of the structures of protein-DNA complexes.
    Genome Biol, Vol. 1, No. 1. (2000)
    by NM Luscombe, SE Austin, HM Berman, JM Thornton
    posted to protein_structure protein-dna_interaction by kaarsinogen on 2007-02-02 20:11:01 as ** along with 4 people and 1 group indigoviolet medic0747 emptyhb jonsta247 EisenLab
  • Improved K-means clustering algorithm for exploring local protein sequence motifs representing common structural property.
    IEEE Trans Nanobioscience, Vol. 4, No. 3. (September 2005), pp. 255-265.
    by W Zhong, G Altun, R Harrison, PC Tai, Y Pan
    posted to protein_structure k-means by kaarsinogen on 2007-01-22 06:55:43 as **
  • Decision tree-based formation of consensus protein secondary structure prediction.
    Bioinformatics, Vol. 15, No. 12. (December 1999), pp. 1039-1046.
    by J Selbig, T Mevissen, T Lengauer
    posted to protein_structure decision_tree by kaarsinogen on 2007-01-22 06:48:29 as ** along with 1 person ujh
  • A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction
    Journal of Structural and Functional Genomics, Vol. 5, No. 4. (January 2005), pp. 255-265.
    by William Mclaughlin, Daniel Kulp, Joanna Cruz, Xiang-Jun Lu, Catherine Lawson, Helen Berman
    posted to protein_structure protein-dna_interaction dna_binding by kaarsinogen on 2007-01-22 06:42:38 as **
  • Protein-RNA interactions: a structural analysis
    Nucl. Acids Res., Vol. 29, No. 4. (15 February 2001), pp. 943-954.
    by Susan Jones, David T Daley, Nicholas M Luscombe, Helen M Berman, Janet M Thornton
    posted to interaction protein-rna protein_structure by kaarsinogen on 2006-11-08 17:45:43 as *** along with 3 people jarasch medic0747 winterschlaefer
  • Conservation of DNA curvature signals in regulatory regions of prokaryotic genes.
    Nucleic Acids Res, Vol. 31, No. 23. (1 December 2003), pp. 6770-6777.
    by R Jáuregui, C Abreu-Goodger, G Moreno-Hagelsieb, J Collado-Vides, E Merino
    posted to dna_binding protein_structure signaling_pathways transcription transcription_factor by kaarsinogen on 2006-10-02 21:19:13 as ***
  • notes Automated prediction of protein function and detection of functional sites from structure.
    Proc Natl Acad Sci U S A, Vol. 101, No. 41. (12 October 2004), pp. 14754-14759.
    by F Pazos, MJ Sternberg
    posted to protein_structure pssm by kaarsinogen on 2006-04-17 19:12:50 as read along with 2 people chrn eweaver
  • Improved prediction of protein-protein binding sites using a support vector machines approach.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1487-1494.
    by JR Bradford, DR Westhead
    posted to 2005_2006_dnabp machine_learning protein_protein_binding protein_structure svm by kaarsinogen on 2006-03-10 19:46:21 as read along with 1 person karbak
  • Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy
    Protein Sci, Vol. 11, No. 11. (1 November 2002), pp. 2735-2739.
    by Pier L Martelli, Piero Fariselli, Luca Malaguti, Rita Casadio
    posted to neural_network protein_descriptors protein_structure by kaarsinogen on 2006-03-08 20:04:11 as **
  • Multiple Alignment of protein structures and sequences for VMD.
    Bioinformatics (8 December 2005)
    by John Eargle, Dan Wright, Zaida Luthey-Schulten
    posted to protein_structure vmd by kaarsinogen on 2006-03-08 17:36:52 as ** along with 1 person BragilMassoud
  • Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria.
    Bioinformatics (6 December 2005)
    by Matthew H J H Cordes, Greta J J Binford
    posted to evolution gene protein_structure by kaarsinogen on 2006-02-01 22:10:04 as ***
  • Structural features of protein-nucleic acid recognition sites.
    Biochemistry, Vol. 38, No. 7. (16 February 1999), pp. 1999-2017.
    by K Nadassy, SJ Wodak, J Janin
    posted to dna_binding docking protein-dna_interaction protein_structure by kaarsinogen on 2006-01-25 23:39:26 as ** along with 1 person medic0747
  • Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?
    J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 597-624.
    by CO Pabo, L Nekludova
    posted to dna_binding docking protein-dna_interaction protein_structure by kaarsinogen on 2006-01-25 23:30:10 as ** along with 1 person medic0747
  • Protein-DNA interactions: A structural analysis.
    J Mol Biol, Vol. 287, No. 5. (16 April 1999), pp. 877-896.
    by S Jones, P van Heyningen, HM Berman, JM Thornton
    posted to dna_binding protein-dna_interaction protein_structure by kaarsinogen on 2006-01-25 22:49:03 as ** along with 1 person medic0747
  • Structure-based prediction of DNA target sites by regulatory proteins.
    Proteins, Vol. 35, No. 1. (1 April 1999), pp. 114-131.
    by H Kono, A Sarai
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2006-01-25 22:44:19 as ** along with 1 person medic0747
  • Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites.
    Nucleic Acids Res, Vol. 26, No. 10. (15 May 1998), pp. 2306-2312.
    by Y Mandel-Gutfreund, H Margalit
    posted to dna_binding protein-dna_interaction protein_structure by kaarsinogen on 2006-01-25 22:35:43 as ** along with 2 people medic0747 roys
  • Consistencies of individual DNA base-amino acid interactions in structures and sequences.
    Nucleic Acids Res, Vol. 23, No. 22. (25 November 1995), pp. 4707-4711.
    by B Lustig, RL Jernigan
    posted to dna_binding protein-dna_interaction protein_descriptors protein_structure by kaarsinogen on 2006-01-25 22:32:32 as **
  • Identifying DNA-binding proteins using structural motifs and the electrostatic potential.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4732-4741.
    by HP Shanahan, MA Garcia, S Jones, JM Thornton
    posted to electrostatic_potential protein-dna_interaction protein_structure by kaarsinogen on 2006-01-25 22:21:47 as ** along with 3 people sriram_s medic0747 ezralanglois
  • Structural analysis of conserved base pairs in protein-DNA complexes.
    Nucleic Acids Res, Vol. 30, No. 7. (1 April 2002), pp. 1704-1711.
    by LA Mirny, MS Gelfand
    posted to protein-dna_interaction protein_structure by kaarsinogen on 2006-01-25 22:17:46 as **
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