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jyuhs Shen [78 articles]

Recent papers posted to jyuhs library by the author Shen. You can also see everyones Shen.
  • Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes
    BMC Genetics, Vol. 9 (28 March 2008), 27.
    by Fan Shen, Jing Huang, Karen R Fitch, Vivi B Truong, Andrew Kirby, Wenwei Chen, Jane Zhang, Guoying Liu, Steven A Mccarroll, Keith W Jones, Michael H Shapero
    posted to cnv by jyuh on 2008-07-25 06:35:06 as **
  • The complete genome of an individual by massively parallel DNA sequencing
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876.
    by David A Wheeler, Maithreyan Srinivasan, Michael Egholm, Yufeng Shen, Lei Chen, Amy Mcguire, Wen He, Yi-Ju Chen, Vinod Makhijani, Thomas G Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L Turcotte, Gerard P Irzyk, James R Lupski, Craig Chinault, Xing-Zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M Muzny, Marcel Margulies, George M Weinstock, Richard A Gibbs, Jonathan M Rothberg
    posted to sequencing hgp by jyuh on 2008-07-16 15:20:52 as ** along with 11 people and 2 groups Neeperando dbensasson Huub_odc bpb orzenil dullhunk djkt ramensky psique caseybrown melting microbiology_nijmegen parkinson's disease references
  • Useful indicators for performing renal biopsy in adult patients with isolated microscopic haematuria
    International Journal of Clinical Practice, Vol. 61, No. 5. (May 2007), pp. 789-794.
    by Shen, , He, , Jiang, , Wang, , Chen,
    posted to hematuria gn biopsy by jyuh on 2008-07-14 11:17:02 as **
  • Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 597-600.
    by Kourosh Salehi-Ashtiani, Xinping Yang, Adnan Derti, Weidong Tian, Tong Hao, Chenwei Lin, Kathryn Makowski, Lei Shen, Ryan R Murray, David Szeto, Nadeem Tusneem, Douglas R Smith, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
    posted to plasmid by jyuh on 2008-07-05 01:52:39 as ** along with 1 person GeeSharpMinor
  • An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 1049-1061.
    by Jonghwan Kim, Jianlin Chu, Xiaohua Shen, Jianlong Wang, Stuart H Orkin
    posted to stem-cell by jyuh on 2008-07-02 07:39:03 as ** along with 4 people kengg inesdesantiago tmmurali maralena
  • Significance of plasma von Willebrand factor level and von Willebrand factor-cleaving protease activity in patients with chronic renal diseases.
    Chinese medical journal, Vol. 121, No. 2. (20 January 2008), pp. 133-136.
    by GY Lu, L Shen, ZY Wang, XF Guo, X Bai, J Su, CG Ruan
    posted to endothelial-dysfunction ckd by jyuh on 2008-06-28 13:56:46 as **
  • Innovations in bayes and empirical bayes methods: estimating parameters, populations and ranks.
    Statistics in medicine, Vol. 18, No. 17-18. (0 1999), pp. 2493-2505.
    by TA Louis, W Shen
    posted to bayes by jyuh on 2008-06-09 16:40:06 as **
  • Kidney-specific cadherin, a specific marker for the distal portion of the nephron and related renal neoplasms
    Modern Pathology, Vol. aop, No. current. (21 January 2005)
    by Steven S Shen, Bhuvaneswari Krishna, Rukmini Chirala, Robert J Amato, Luan D Truong
    posted to tin ihc by jyuh on 2008-06-06 05:17:45 as **
  • Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy
    Laboratory Investigation, Vol. aop, No. current.
    by Tadeusz Majewski, Sangkyou Lee, Joon Jeong, Dong-Sup Yoon, Andrzej Kram, Mi-Sook Kim, Tomasz Tuziak, Jolanta Bondaruk, Sooyong Lee, Weon-Seo Park, Kuang S Tang, Woonbok Chung, Lanlan Shen, Saira S Ahmed, Dennis A Johnston, Barton H Grossman, Colin P Dinney, Jain-Hua Zhou, Alan R Harris, Carrie Snyder, Slawomir Filipek, Steven A Narod, Patrice Watson, Henry T Lynch, Adi Gazdar, Menashe Bar-Eli, Xifeng F Wu, David J Mcconkey, Keith Baggerly, Jean-Pierre Issa, William F Benedict, Steven E Scherer, Bogdan Czerniak
    posted to genomics cancer by jyuh on 2008-06-02 04:43:10 as **
  • Poor visualization of renal collecting system in intravenous urography as an indicator of invasive transitional cell carcinoma in the upper urinary tract.
    Chinese medical journal, Vol. 120, No. 16. (20 August 2007), pp. 1387-1390.
    by ZJ Shen, LY Li, GD Liao, D Chen
    posted to radiology cancer by jyuh on 2008-05-27 06:50:15 as **
  • Towards patterns tree of gene coexpression in eukaryotic species
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1367-1373.
    by Haiyun Wang, Qi Wang, Xia Li, Bairong Shen, Min Ding, Ziyin Shen
    posted to pathway microarray by jyuh on 2008-05-20 06:34:01 as **
  • Clustering millions of tandem mass spectra.
    Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 113-122.
    by AM Frank, N Bandeira, Z Shen, S Tanner, SP Briggs, RD Smith, PA Pevzner
    posted to proteomics by jyuh on 2008-05-18 03:09:44 as ** along with 1 person jfr
  • HIP2: An Online Database of Human Plasma Proteins from Healthy Individuals.
    BMC medical genomics, Vol. 1, No. 1. (25 April 2008)
    by Sudipto Saha, Scott H Harrison, Changyu Shen, Haixu Tang, Predrag Radivojac, Randy J Arnold, Xiang Zhang, Jake Y Chen
    posted to proteomics blood by jyuh on 2008-05-13 05:57:56 as **
  • Splicing together different regions of a gene by modified polymerase chain reaction-based site-directed mutagenesis.
    Analytical biochemistry, Vol. 373, No. 2. (15 February 2008), pp. 398-400.
    by X Li, Y Qiu, Y Shen, C Ding, P Liu, J Zhou, Z Ma
    posted to no-tag by jyuh on 2008-05-08 09:38:40 as **
  • Berberine, a natural plant product, activates AMP-activated protein kinase with beneficial metabolic effects in diabetic and insulin-resistant states.
    Diabetes, Vol. 55, No. 8. (August 2006), pp. 2256-2264.
    by YS Lee, WS Kim, KH Kim, MJ Yoon, HJ Cho, Y Shen, JM Ye, CH Lee, WK Oh, CT Kim, C Hohnen-Behrens, A Gosby, EW Kraegen, DE James, JB Kim
    posted to no-tag by jyuh on 2008-04-29 04:18:07 as **
  • Accurate annotation of peptide modifications through unrestrictive database search.
    Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 170-181.
    by S Tanner, SH Payne, S Dasari, Z Shen, PA Wilmarth, LL David, WF Loomis, SP Briggs, V Bafna
    posted to no-tag by jyuh on 2008-04-26 16:13:04 as **
  • DBMLoc: a Database of proteins with multiple subcellular localizations
    BMC Bioinformatics, Vol. 9 (28 February 2008), 127.
    by Song Zhang, Xuefeng Xia, Jincheng Shen, Yun Zhou, Zhirong Sun
    posted to proteomics database by jyuh on 2008-04-25 02:55:30 as ** along with 1 person grahamc
  • Homocysteine, vitamin B6, and lipid in cardiovascular disease
    Nutrition, Vol. 18, No. 7-8. ( 2002), pp. 595-598.
    by Sue-Joan Chan, Chen-Nen Chang, Jee-Ching Hsu, Ying-Shiung Lee, Chen-Hsiang Shen
    posted to no-tag by jyuh on 2008-04-20 17:10:32 as **
  • A target role for mast cell in the prevention and therapy of hepatic fibrosis.
    Medical hypotheses, Vol. 70, No. 4. (2008), pp. 760-764.
    by DZ Shen
    posted to no-tag by jyuh on 2008-04-20 01:51:43 as **
  • Investigations of the cytotoxicity of epigallocatechin-3-gallate against PC-3 cells in the presence of Cd(2+)in vitro.
    Toxicology in vitro : an international journal published in association with BIBRA (15 February 2008)
    by Lan-Cui C Zhang, Hai-Ning N Yu, Shi-Li L Sun, Jun-Guo G Yang, Guo-Qing Q He, Hui Ruan, Sheng-Rong R Shen
    posted to no-tag by jyuh on 2008-04-02 04:53:01 as **
  • Association between delta-aminolevulinic acid dehydratase (ALAD) polymorphism and blood lead levels: a meta-regression analysis.
    J Toxicol Environ Health A, Vol. 70, No. 23. (December 2007), pp. 1986-1994.
    by Y Zhao, L Wang, HB Shen, ZX Wang, QY Wei, F Chen
    posted to no-tag by jyuh on 2008-03-25 04:46:11 as **
  • Juvenile gout in Taiwan associated with family history and overweight.
    J Rheumatol, Vol. 34, No. 11. (November 2007), pp. 2308-2311.
    by SY Chen, ML Shen
    posted to no-tag by jyuh on 2008-03-23 14:09:28 as **
  • Identification of common transcriptional regulatory elements in interleukin-17 target genes.
    J Biol Chem, Vol. 281, No. 34. (25 August 2006), pp. 24138-24148.
    by F Shen, Z Hu, J Goswami, SL Gaffen
    posted to no-tag by jyuh on 2008-03-20 01:56:17 as **
  • Ecological applications of multilevel analysis of variance.
    Ecology, Vol. 88, No. 10. (October 2007), pp. 2489-2495.
    by SS Qian, Z Shen
    posted to no-tag by jyuh on 2008-03-16 03:48:30 as **
  • A simulation-based evaluation of methods to estimate the impact of an adverse event on hospital length of stay.
    Med Care, Vol. 45, No. 10 Supl 2. (October 2007)
    by MH Samore, S Shen, T Greene, G Stoddard, B Sauer, J Shinogle, J Nebeker, S Harbarth
    posted to no-tag by jyuh on 2008-03-15 23:42:37 as **
  • Abnormal expression of Smurf2 during the process of rat liver fibrosis
    Chinese Journal of Digestive Diseases, Vol. 7, No. 4. (November 2006), pp. 237-245.
    by Yu Cai, Xi Z Shen, Chao H Zhou, Ji Y Wang
    posted to no-tag by jyuh on 2008-02-26 16:16:56 as **
  • High prevalence of albuminuria in population-based patients diagnosed with type 2 diabetes in the Shanghai downtown.
    Diabetes Res Clin Pract, Vol. 75, No. 2. (February 2007), pp. 184-192.
    by B Lu, J Wen, XY Song, XH Dong, YH Yang, ZY Zhang, NQ Zhao, HY Ye, B Mou, FL Chen, Y Liu, Y Shen, XC Wang, LN Zhou, YM Li, XX Zhu, RM Hu
    posted to no-tag by jyuh on 2008-02-24 01:08:56 as **
  • Efficacy of urine screening at school: experience in Shanghai, China.
    Pediatr Nephrol, Vol. 22, No. 12. (December 2007), pp. 2073-2079.
    by YH Zhai, H Xu, GH Zhu, MJ Wei, BC Hua, Q Shen, J Rao, J Ge
    posted to no-tag by jyuh on 2008-02-13 07:59:50 as **
  • Human biliverdin reductase, a previously unknown activator of protein kinase C betaII.
    J Biol Chem, Vol. 282, No. 11. (16 March 2007), pp. 8110-8122.
    by MD Maines, T Miralem, N Lerner-Marmarosh, J Shen, PE Gibbs
    posted to no-tag by jyuh on 2008-02-09 07:43:48 as **
  • Integrative genomic approaches identify IKBKE as a breast cancer oncogene.
    Cell, Vol. 129, No. 6. (15 June 2007), pp. 1065-1079.
    by JS Boehm, JJ Zhao, J Yao, SY Kim, R Firestein, IF Dunn, SK Sjostrom, LA Garraway, S Weremowicz, AL Richardson, H Greulich, CJ Stewart, LA Mulvey, RR Shen, L Ambrogio, T Hirozane-Kishikawa, DE Hill, M Vidal, M Meyerson, JK Grenier, G Hinkle, DE Root, TM Roberts, ES Lander, K Polyak, WC Hahn
    posted to plasmid by jyuh on 2008-02-03 16:02:32 as ** along with 2 people and 2 groups jfr dejori ic4 generif_paper
  • Baicalein inhibition of hydrogen peroxide-induced apoptosis via ROS-dependent heme oxygenase 1 gene expression.
    Biochim Biophys Acta, Vol. 1773, No. 7. (July 2007), pp. 1073-1086.
    by HY Lin, SC Shen, CW Lin, LY Yang, YC Chen
    posted to no-tag by jyuh on 2008-01-23 01:59:30 as **
  • Increased Smad1 expression and transcriptional activity enhances trans-differentiation of hepatic stellate cells.
    J Cell Physiol, Vol. 212, No. 3. (September 2007), pp. 764-770.
    by H Shen, J Fan, F Burczynski, GY Minuk, P Cattini, Y Gong
    posted to no-tag by jyuh on 2008-01-21 13:33:38 as **
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (11 October 2007)
    by Laura D D Wood, D Williams W Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J J Leary, Dong Shen, Simina M M Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A Wilson, Joshua S S Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H Park, Charit L L Pethiyagoda, P V Krishna V Pant, Dennis G G Ballinger, Andrew B B Sparks, James Hartigan, Douglas R R Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D Markowitz, Giovanni Parmigiani, Kenneth W W Kinzler, Victor E E Velculescu, Bert Vogelstein
    posted to no-tag by jyuh on 2008-01-17 05:38:44 as ** along with 13 people and 1 group cerami gwenknight tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani VUMCGenomics
  • A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 202-208.
    by Changyu Shen, Zhiping Wang, Ganesh Shankar, Xiang Zhang, Lang Li
    posted to no-tag by jyuh on 2008-01-15 03:20:14 as ** along with 1 person kluck
  • Vascular and inflammatory stresses mediate atherosclerosis via RAGE and its ligands in apoE mice.
    J Clin Invest, Vol. 118, No. 1. (January 2008), pp. 183-194.
    by E Harja, DX Bu, BI Hudson, JS Chang, X Shen, K Hallam, AZ Kalea, Y Lu, RH Rosario, S Oruganti, Z Nikolla, D Belov, E Lalla, R Ramasamy, SF Yan, AM Schmidt
    posted to no-tag by jyuh on 2008-01-12 15:43:03 as **
  • Ginsenoside Re Reduces Insulin Resistance through Inhibition of c-Jun NH2-Terminal Kinase and Nuclear Factor-kappaB
    Mol Endocrinol, Vol. 22, No. 1. (1 January 2008), pp. 186-195.
    by Zhiguo Zhang, Xiaoying Li, Wenshan Lv, Yisheng Yang, Hong Gao, Jun Yang, Yun Shen, Guang Ning
    posted to no-tag by jyuh on 2008-01-02 04:31:56 as **
  • The Bradykinin B2 receptor gene is a target of angiotensin II type 1 receptor signaling.
    J Am Soc Nephrol, Vol. 18, No. 4. (April 2007), pp. 1140-1149.
    by B Shen, LM Harrison-Bernard, AJ Fuller, V Vanderpool, Z Saifudeen, SS El-Dahr
    posted to no-tag by jyuh on 2007-12-30 11:59:41 as **
  • Phyllanthus urinaria ameliorates the severity of nutritional steatohepatitis both <I>in vitro</I> and <I>in vivo</I>
    Hepatology, Vol. 9999, No. 9999. (2007), NA.
    by Bo Shen, Jun Yu, Shiyan Wang, Eagle SH Chu, VWS Wong, Xin Zhou, Ge Lin, Joseph JY Sung, Henry LY Chan
    posted to no-tag by jyuh on 2007-12-29 03:30:52 as **
  • A method to generate antigen-specific mAb capable of staining formalin-fixed, paraffin-embedded tissue sections.
    J Immunol Methods, Vol. 299, No. 1-2. (April 2005), pp. 139-151.
    by X Wang, M Campoli, HS Cho, T Ogino, N Bandoh, J Shen, SY Hur, T Kageshita, S Ferrone
    posted to no-tag by jyuh on 2007-12-27 06:04:46 as **
  • Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites.
    Biochem Biophys Res Commun, Vol. 355, No. 4. (20 April 2007), pp. 1006-1011.
    by HB Shen, KC Chou
    posted to no-tag by jyuh on 2007-12-26 07:31:41 as **
  • Bright Liver and Alanine Aminotransferase Are Associated with Metabolic Syndrome in Adults
    Obesity Res, Vol. 13, No. 7. (1 July 2005), pp. 1238-1245.
    by Yung-Hsuan Shen, Wei-Shiung Yang, Tzong-Hsi Lee, Long-Teng Lee, Ching-Yu Chen, Kuo-Chin Huang
    posted to no-tag by jyuh on 2007-12-14 02:35:46 as **
  • Bayesian modelling of the dynamics of hepatotoxicity.
    Stat Med, Vol. 26, No. 19. (30 August 2007), pp. 3591-3611.
    by Q Li, X Shen, DK Pearl
    posted to no-tag by jyuh on 2007-12-12 07:30:23 as **
  • Functional regression analysis using an F test for longitudinal data with large numbers of repeated measures.
    Stat Med, Vol. 26, No. 7. (30 March 2007), pp. 1552-1566.
    by X Yang, Q Shen, H Xu, S Shoptaw
    posted to longitudinal functional-regression by jyuh on 2007-12-11 02:21:56 as **
  • MDQC: a new quality assessment method for microarrays based on quality control reports
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3162-3169.
    by Cohen, Zsuzsanna Hollander, Enqing Shen, Ruben H Zamar, Robert Balshaw, Andreas Scherer, Bruce Mcmanus, Paul Keown, Robert W Mcmaster, Raymond T Ng
    posted to no-tag by jyuh on 2007-12-03 15:14:13 as ** along with 2 people aviad_work waszak
  • Proteomic identification of proteins associated with the osmoregulatory transcription factor TonEBP/OREBP: functional effects of Hsp90 and PARP-1.
    Am J Physiol Renal Physiol, Vol. 292, No. 3. (March 2007)
    by Y Chen, MP Schnetz, CE Irarrazabal, RF Shen, CK Williams, MB Burg, JD Ferraris
    posted to no-tag by jyuh on 2007-11-10 23:50:14 as **
  • Method to assess identifiability in electronic data files.
    Am J Epidemiol, Vol. 165, No. 5. (1 March 2007), pp. 597-601.
    by HL Howe, AJ Lake, T Shen
    posted to no-tag by jyuh on 2007-11-06 15:48:21 as ** along with 1 person toba
  • Power to Detect Risk Alleles Using Genome-Wide Tag SNP Panels.
    PLoS Genet, Vol. 3, No. 10. (5 October 2007)
    by Michael A A Eberle, Pauline C C Ng, Kenneth Kuhn, Lixin Zhou, Daniel A A Peiffer, Luana Galver, Karine A A Viaud-Martinez, Cynthia Taylor T Lawley, Kevin L L Gunderson, Richard Shen, Sarah S S Murray
    posted to snp gwa by jyuh on 2007-10-30 03:05:02 as **
  • Defining the optimal parameters for hairpin-based knockdown constructs
    RNA, Vol. 13, No. 10. (1 October 2007), pp. 1765-1774.
    by Leiming Li, Xiaoyu Lin, Anastasia Khvorova, Stephen W Fesik, Yu Shen
    posted to no-tag by jyuh on 2007-10-29 04:06:20 as **
  • Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation.
    Proc Natl Acad Sci U S A, Vol. 102, No. 23. (7 June 2005), pp. 8114-8119.
    by J Park, Y Hu, TV Murthy, F Vannberg, B Shen, A Rolfs, JE Hutti, LC Cantley, J Labaer, E Harlow, L Brizuela
    posted to no-tag by jyuh on 2007-10-23 14:44:11 as **
  • Meta-analysis: the effect of supplementation with probiotics on eradication rates and adverse events during Helicobacter pylori eradication therapy
    Alimentary Pharmacology & Therapeutics, Vol. 25, No. 2. (January 2007), pp. 155-168.
    by JL Tong, ZH Ran, J Shen, CX Zhang, SD Xiao
    posted to no-tag by jyuh on 2007-10-23 10:30:02 as **
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