qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.

by: C Ritz, AN Spiess

Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1549-1551.

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Abstract

The qpcR library is an add-on to the free R statistical environment performing sigmoidal model selection in real-time quantitative polymerase chain reaction (PCR) data analysis. Additionally, the package implements the most commonly used algorithms for real-time PCR data analysis and is capable of extensive statistical comparison for the selection and evaluation of the different models based on several measures of goodness of fit. AVAILABILITY: www.dr-spiess.de/qpcR.html. SUPPLEMENTARY INFORMATION: Statistical evaluations of the implemented methods can be found at www.dr-spiess.de under 'Supplemental Data'.

@article{citeulike:2986560, abstract = {The qpcR library is an add-on to the free R statistical environment performing sigmoidal model selection in real-time quantitative polymerase chain reaction (PCR) data analysis. Additionally, the package implements the most commonly used algorithms for real-time PCR data analysis and is capable of extensive statistical comparison for the selection and evaluation of the different models based on several measures of goodness of fit. AVAILABILITY: www.dr-spiess.de/qpcR.html. SUPPLEMENTARY INFORMATION: Statistical evaluations of the implemented methods can be found at www.dr-spiess.de under 'Supplemental Data'.}, address = {Statistics Group, Department of Natural Sciences, Faculty of Life Sciences, University of Copenhagen, Copenhagen, Denmark.}, author = {Ritz, C. and Spiess, A. N. }, citeulike-article-id = {2986560}, doi = {http://dx.doi.org/10.1093/bioinformatics/btn227}, issn = {1460-2059}, journal = {Bioinformatics (Oxford, England)}, keywords = {pcr, r, software, statistics}, month = {July}, number = {13}, pages = {1549--1551}, posted-at = {2008-07-11 04:19:03}, priority = {2}, title = {qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.}, url = {http://dx.doi.org/10.1093/bioinformatics/btn227}, volume = {24}, year = {2008} }

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TY - JOUR ID - citeulike:2986560 L3 - citeulike-article-id:2986560 TI - qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis. JF - Bioinformatics (Oxford, England) VL - 24 IS - 13 SP - 1549 EP - 1551 AD - Statistics Group, Department of Natural Sciences, Faculty of Life Sciences, University of Copenhagen, Copenhagen, Denmark. SN - 1460-2059 N2 - The qpcR library is an add-on to the free R statistical environment performing sigmoidal model selection in real-time quantitative polymerase chain reaction (PCR) data analysis. Additionally, the package implements the most commonly used algorithms for real-time PCR data analysis and is capable of extensive statistical comparison for the selection and evaluation of the different models based on several measures of goodness of fit. AVAILABILITY: www.dr-spiess.de/qpcR.html. SUPPLEMENTARY INFORMATION: Statistical evaluations of the implemented methods can be found at www.dr-spiess.de under 'Supplemental Data'. KW - pcr KW - r KW - software KW - statistics AU - Ritz, C AU - Spiess, AN PY - 2008/07/01/ UR - http://dx.doi.org/10.1093/bioinformatics/btn227 ER -

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