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jstajics library [92 articles]

Neue Artikel in jstajics Bibliothek.
  • Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
    The Journal of Chemical Physics, Vol. 117, No. 15. (2002), pp. 6959-6969.
    by Eric L Haseltine, James B Rawlings
    posted to stochastic by jstajic on 2007-11-29 23:54:38 as *** along with 3 people and 1 group jjray ner25 dagmar compneur
  • Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
    J. Phys. Chem. A, Vol. 104, No. 9. (9 March 2000), pp. 1876-1889.
    by MA Gibson, J Bruck
    posted to stochastic by jstajic on 2007-11-29 23:54:11 as read along with 5 people and 1 group jjray petermilner jberro matthewhflamm rcaze Projet_ENSIMAG
  • The chemical Langevin equation
    The Journal of Chemical Physics, Vol. 113, No. 1. (2000), pp. 297-306.
    by Daniel T Gillespie
    posted to stochastic by jstajic on 2007-11-05 23:40:06 as read along with 2 people dylanwalker rjoy
  • Structural basis for amoeboid motility in nematode sperm
    Nat Struct Mol Biol, Vol. 5, No. 3. (March 1998), pp. 184-189.
    by Timothy L Bullock, Airlie J Mccoy, Helen M Kent, Thomas M Roberts, Murray Stewart
    posted to msp by jstajic on 2007-10-22 19:44:11 as ****
  • Structure of MFP2 and its Function in Enhancing MSP Polymerization in Ascaris Sperm Amoeboid Motility
    Journal of Molecular Biology, Vol. 347, No. 3. (1 April 2005), pp. 583-595.
    by Richard P Grant, Shawnna M Buttery, Gail C Ekman, Thomas M Roberts, Murray Stewart
    posted to msp by jstajic on 2007-10-16 23:07:07 as **
  • Cytoskeleton dynamics powers nematode sperm motility.
    Adv Protein Chem, Vol. 71 (2005), pp. 383-399.
    by M Stewart, TM Roberts
    posted to msp by jstajic on 2007-10-16 22:55:08 as ***
  • Preparing to move: Assembly of the MSP amoeboid motility apparatus during spermiogenesis in <I>Ascaris</I>
    Cell Motility and the Cytoskeleton, Vol. 60, No. 4. (2005), pp. 191-199.
    by Maria A Rodriguez, Lawrence L Leclaire, Thomas M Roberts
    posted to msp by jstajic on 2007-10-16 22:40:07 as ****
  • A Ser/Thr Kinase Required for Membrane-associated Assembly of the Major Sperm Protein Motility Apparatus in the Amoeboid Sperm of Ascaris
    Mol. Biol. Cell, Vol. 18, No. 5. (1 May 2007), pp. 1816-1825.
    by Kexi Yi, Shawnna M Buttery, Murray Stewart, Thomas M Roberts
    posted to msp by jstajic on 2007-10-16 22:33:05 as ****
  • A remark on computing distance functions
    J. Comput. Phys., Vol. 163, No. 1. (September 2000), pp. 51-67.
    by Giovanni Russo, Peter Smereka
    posted to no-tag by jstajic on 2007-09-17 22:59:07 as **** along with 1 person and 1 group dilbert SORG
  • A Non-oscillatory Eulerian Approach to Interfaces in Multimaterial Flows (the Ghost Fluid Method)
    Journal of Computational Physics, Vol. 152, No. 2. (1 July 1999), pp. 457-492.
    by Ronald P Fedkiw, Tariq Aslam, Barry Merriman, Stanley Osher
    posted to level set by jstajic on 2007-09-14 20:37:48 as **** along with 3 people and 1 group kutabar batty wrj4471 Physics-Based-Animation
  • A Cartesian Grid Embedded Boundary Method for Poisson's Equation on Irregular Domains
    Journal of Computational Physics, Vol. 147, No. 1. (20 November 1998), pp. 60-85.
    by Hans Johansen, Phillip Colella
    posted to pde by jstajic on 2007-09-06 16:14:37 as *** along with 1 person and 1 group batty Physics-Based-Animation
  • A Cartesian grid embedded boundary method for hyperbolic conservation laws
    Journal of Computational Physics, Vol. 211, No. 1. (1 January 2006), pp. 347-366.
    by Phillip Colella, Daniel T Graves, Benjamin J Keen, David Modiano
    posted to pde by jstajic on 2007-09-06 16:08:57 as ****
  • A Cartesian grid embedded boundary method for the heat equation and Poisson's equation in three dimensions
    Journal of Computational Physics, Vol. 211, No. 2. (20 January 2006), pp. 531-550.
    by Peter Schwartz, Michael Barad, Phillip Colella, Terry Ligocki
    posted to pde by jstajic on 2007-09-06 16:06:28 as ** along with 1 person iff
  • A Cartesian Grid Embedded Boundary Method for the Heat Equation on Irregular Domains
    Journal of Computational Physics, Vol. 173, No. 2. (1 November 2001), pp. 620-635.
    by Peter Mccorquodale, Phillip Colella, Hans Johansen
    posted to pde by jstajic on 2007-09-06 15:55:03 as ****
  • Conservative front tracking and level set algorithms
    Proceedings of the National Academy of Sciences, Vol. 98, No. 25. (4 December 2001), pp. 14198-14201.
    by James Glimm, Xiao L Li, Yingjie Liu, Ning Zhao
    posted to pde by jstajic on 2007-09-05 22:05:27 as **
  • Finite-volume lattice Boltzmann method
    Physical Review E, Vol. 59, No. 5. (May 1999), 6202.
    by Haowen Xi, Gongwen Peng, So-Hsiang Chou
    posted to pde by jstajic on 2007-08-30 23:06:55 as ** along with 1 person rabio
  • Cofilin Binding to Muscle and Non-muscle Actin Filaments: Isoform-dependent Cooperative Interactions
    Journal of Molecular Biology, Vol. 346, No. 2. (18 February 2005), pp. 557-564.
    by De La
    posted to actin by jstajic on 2007-08-17 00:03:36 as ***
  • Three-dimensional reconstruction of F-actin, thin filaments and decorated thin filaments
    Journal of Molecular Biology, Vol. 50, No. 2. (14 June 1970), pp. 279-288.
    by PB Moore, HE Huxley, DJ Derosier
    posted to actin by jstajic on 2007-08-16 20:31:49 as read
  • Actin binding proteins: regulation of cytoskeletal microfilaments.
    Physiol Rev, Vol. 83, No. 2. (April 2003), pp. 433-473.
    by CG dos Remedios, D Chhabra, M Kekic, IV Dedova, M Tsubakihara, DA Berry, NJ Nosworthy
    posted to actin by jstajic on 2007-08-15 20:32:00 as read
  • Nucleotide Effects on the Structure and Dynamics of Actin.
    Biophys J (25 May 2007)
    by Xiange Zheng, Karthikeyan Diraviyam, David Sept
    posted to actin by jstajic on 2007-08-14 20:57:59 as *** along with 1 person choonpeng
  • Regulation of actin filament assembly by Arp2/3 complex and formins.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 451-477.
    by TD Pollard
    posted to actin by jstajic on 2007-08-01 17:28:56 as read
  • Stabilizing Turing patterns with subdiffusion in systems with low particle numbers
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 68, No. 3. (2003)
    by Matthias Weiss
    posted to formation pattern by jstajic on 2007-02-16 21:02:21 as read
  • Global Existence for a Parabolic Chemotaxis Model with Prevention of Overcrowding
    Advances in Applied Mathematics, Vol. 26, No. 4. (May 2001), pp. 280-301.
    by T Hillen, K Painter
    posted to chemotaxis pde quorum by jstajic on 2006-12-15 23:39:49 as ***
  • Fractional step methods applied to a chemotaxis model
    Journal of Mathematical Biology, Vol. V41, No. 5. (1 November 2000), pp. 455-475.
    by Rebecca Tyson, LG Stern, Randall J Leveque
    posted to pde by jstajic on 2006-12-15 23:24:12 as **** along with 1 person chrn
  • Weighted finite difference techniques for the one-dimensional advection-diffusion equation
    Applied Mathematics and Computation, Vol. 147, No. 2. (12 January 2004), pp. 307-319.
    by Mehdi Dehghan
    posted to pde by jstajic on 2006-12-15 23:23:26 as ****
  • Accurate discretization of advection-diffusion equations
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 70, No. 3. (2004)
    by R Grima, TJ Newman
    posted to pde by jstajic on 2006-12-15 22:19:01 as ****
  • Receptor-mediated regulation of PI3Ks confines PI(3,4,5)P3 to the leading edge of chemotaxing cells.
    Mol Biol Cell, Vol. 14, No. 5. (May 2003), pp. 1913-1922.
    by YE Huang, M Iijima, CA Parent, S Funamoto, RA Firtel, P Devreotes
    posted to chemotaxis dictyostelium by jstajic on 2006-10-23 17:35:34 as **
  • Directional sensing in eukaryotic chemotaxis: A balanced inactivation model
    PNAS, Vol. 103, No. 26. (27 June 2006), pp. 9761-9766.
    by Herbert Levine, David A Kessler, Wouter-Jan Rappel
    posted to chemotaxis dictyostelium by jstajic on 2006-10-23 17:25:29 as ***
  • Models of Eukaryotic Gradient Sensing: Application to Chemotaxis of Amoebae and Neutrophils
    Biophys. J., Vol. 82, No. 1. (1 January 2002), pp. 50-63.
    by Andre Levchenko, Pablo A Iglesias
    posted to chemotaxis dictyostelium by jstajic on 2006-10-23 17:20:44 as **** along with 2 people satulovsky javierFellow
  • Dynamics of novel feet of Dictyostelium cells during migration.
    J Cell Sci, Vol. 117, No. Pt 8. (15 March 2004), pp. 1443-1455.
    by KS Uchida, S Yumura
    posted to chemotaxis dictyostelium by jstajic on 2006-10-20 22:01:55 as **** along with 1 person javierFellow
  • Chemoattractant-induced phosphatidylinositol 3,4,5-trisphosphate accumulation is spatially amplified and adapts, independent of the actin cytoskeleton
    PNAS, Vol. 101, No. 24. (15 June 2004), pp. 8951-8956.
    by Chris Janetopoulos, Lan Ma, Peter N Devreotes, Pablo A Iglesias
    posted to chemotaxis dictyostelium by jstajic on 2006-10-20 21:59:08 as read along with 1 person javierFellow
  • Chemotaxis: signalling modules join hands at front and tail.
    EMBO Rep, Vol. 5, No. 1. (January 2004), pp. 35-40.
    by M Postma, L Bosgraaf, HM Loovers, PJ Van Haastert
    posted to chemotaxis dictyostelium by jstajic on 2006-10-16 23:13:25 as read
  • CHEMOTAXIS: SIGNALLING THE WAY FORWARD
    Nat Rev Mol Cell Biol, Vol. 5, No. 8. (2004), pp. 626-634.
    by Peter J Van Haastert, Peter N Devreotes
    posted to chemotaxis dictyostelium by jstajic on 2006-10-16 23:09:24 as read along with 1 person and 1 group ksk ikeg-lab
  • Salicylate induction of antibiotic resistance in Escherichia coli: activation of the mar operon and a mar-independent pathway.
    J Bacteriol, Vol. 175, No. 24. (December 1993), pp. 7856-7862.
    by SP Cohen, SB Levy, J Foulds, JL Rosner
    posted to mar by jstajic on 2005-10-19 23:48:00 as ***
  • A Monte Carlo simulation of the Escherichia coli cell cycle.
    J Theor Biol, Vol. 176, No. 3. (7 October 1995), pp. 411-430.
    by JD Keasling, H Kuo, G Vahanian
    posted to carlo monte by jstajic on 2005-09-29 19:12:59 as *** along with 1 person madhadron
  • Characterization of MarR, the repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli.
    J Bacteriol, Vol. 177, No. 12. (June 1995), pp. 3414-3419.
    by AS Seoane, SB Levy
    posted to mar by jstajic on 2005-09-27 22:39:48 as **
  • Promoter discrimination by the related transcriptional activators MarA and SoxS: differential regulation by differential binding.
    Mol Microbiol, Vol. 35, No. 3. (February 2000), pp. 623-634.
    by RG Martin, WK Gillette, JL Rosner
    posted to mar by jstajic on 2005-09-13 18:39:47 as read along with 1 person discreteonyxorb
  • The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks.
    J Mol Biol, Vol. 334, No. 2. (21 November 2003), pp. 197-204.
    by S Mangan, A Zaslaver, U Alon
    posted to motifs by jstajic on 2005-09-10 00:10:13 as *** along with 2 people pmendes karfunkel
  • Structure and function of the feed-forward loop network motif.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 11980-11985.
    by S Mangan, U Alon
    posted to motifs by jstajic on 2005-09-10 00:09:15 as *** along with 12 people and 3 groups hannahrajasingh marck camster rklancer korakot zqshen jjray alexg balicea ddahlem jtaylor gcalda Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to motifs by jstajic on 2005-09-10 00:06:08 as *** along with 12 people and 1 group hannahrajasingh Borelli jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena EBI-regulation
  • Analysis of growth rate effects on productivity of recombinant Escherichia coli populations using molecular mechanism models. Reprinted from Biotechnology and Bioengineering, Vol. 26, Issue 1, Pages 66-73 (1984).
    Biotechnol Bioeng, Vol. 67, No. 6. (20 March 2000), pp. 805-812.
    by SB Lee, JE Bailey
    posted to plasmids by jstajic on 2005-08-05 00:51:03 as ***
  • Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.
    Science, Vol. 305, No. 5682. (16 July 2004), pp. 386-389.
    by CG Kalodimos, N Biris, AM Bonvin, MM Levandoski, M Guennuegues, R Boelens, R Kaptein
    posted to transcription by jstajic on 2005-08-04 01:41:20 as *** along with 1 person lna
  • BIOCHEMISTRY: Completing the View of Transcriptional Regulation
    Science, Vol. 305, No. 5682. (16 July 2004), pp. 350-352.
    by Peter H von Hippel
    posted to transcription by jstajic on 2005-08-04 01:40:36 as read
  • Lac repressor genetic map in real space.
    Trends Biochem Sci, Vol. 22, No. 9. (September 1997), pp. 334-339.
    by HC Pace, MA Kercher, P Lu, P Markiewicz, JH Miller, G Chang, M Lewis
    posted to lac by jstajic on 2005-08-04 00:41:24 as *** along with 1 person lna
  • Modeling network dynamics: the lac operon, a case study.
    J Cell Biol, Vol. 161, No. 3. (12 May 2003), pp. 471-476.
    by JM Vilar, CC Guet, S Leibler
    posted to lac by jstajic on 2005-08-03 23:29:17 as read along with 7 people and 2 groups rklancer jjray bayesian balicea johncumbers wilsoros carmaus dIEMoSIRIS MoSi-Rostock
  • A closer view of the conformation of the Lac repressor bound to operator
    Nat Struct Mol Biol, Vol. 7, No. 3. (March 2000), pp. 209-214.
    by Charles E Bell, Mitchell Lewis
    posted to lac by jstajic on 2005-08-03 01:58:47 as *** along with 1 person lna
  • Mechanism responsible for glucose-lactose diauxie in Escherichia coli: challenge to the cAMP model.
    Genes Cells, Vol. 1, No. 3. (March 1996), pp. 293-301.
    by T Inada, K Kimata, H Aiba
    posted to lac by jstajic on 2005-08-03 01:30:26 as ***
  • Sociomicrobiology: the connections between quorum sensing and biofilms.
    Trends Microbiol, Vol. 13, No. 1. (January 2005), pp. 27-33.
    by MR Parsek, EP Greenberg
    posted to quorum sensing by jstajic on 2005-07-29 01:49:10 as ***
  • Spatial range of autocrine signaling: modeling and computational analysis.
    Biophys J, Vol. 81, No. 4. (October 2001), pp. 1854-1867.
    by SY Shvartsman, HS Wiley, WM Deen, DA Lauffenburger
    posted to signaling by jstajic on 2005-07-29 01:35:13 as *** along with 1 person and 4 groups jwdietrich MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Interaction of divalent cations with beta-galactosidase (Escherichia coli).
    Biochemistry, Vol. 18, No. 19. (18 September 1979), pp. 4090-4095.
    by RE Huber, C Parfett, H Woulfe-Flanagan, DJ Thompson
    posted to lac by jstajic on 2005-07-29 01:06:14 as read
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