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jjrays e_coli [42 articles]

Neue Publikationen in jjrays Bibliothek eingetragen unter dem Bezeichner: e_coli. You can also see everyone's e_coli.
  • Lipid Localization in Bacterial Cells through Curvature-Mediated Microphase Separation
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1034-1049.
    by Ranjan Mukhopadhyay, Kerwyn C Huang, Ned S Wingreen
    posted to sporulation lipid_domain e_coli biophysics bacteria bacillus_subtilis by jjray on 2008-07-21 22:58:35 as **
  • Functional organisation of Escherichia coli transcriptional regulatory network
    Journal of Molecular Biology, Vol. 381, No. 1. (1 August 2008), pp. 238-247.
    by Agustino Martínez-Antonio, Sarath C Janga, Denis Thieffry
    posted to transcriptional_regulation positive_feedback global_regulator feedback e_coli bacteria by jjray on 2008-07-11 17:13:23 as ** along with 1 person maralena
  • EnvZ-OmpR Interaction and Osmoregulation in Escherichia coli
    J. Biol. Chem., Vol. 277, No. 27. (28 June 2002), pp. 24155-24161.
    by Sheng J Cai, Masayori Inouye
    posted to two-component_system quantitative_data parameter e_coli binding_constant bacteria by jjray on 2008-06-20 22:47:40 as read
  • Crystal Structures of the Receiver Domain of the Response Regulator PhoP from Escherichia coli in the Absence and Presence of the Phosphoryl Analog Beryllofluoride
    J. Bacteriol., Vol. 189, No. 16. (15 August 2007), pp. 5987-5995.
    by Priti Bachhawat, Ann M Stock
    posted to two-component_system signaling e_coli bacteria 3-dimensional_structure by jjray on 2008-06-11 18:16:30 as read
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to simulation network evolution e_coli bacteria by jjray on 2008-06-10 22:37:00 as read along with 7 people and 2 groups stringertheory dbikard deanmalmgren djkt skumagai roys brembs Centre de Recherches Interdisciplinaires Bacterial Genome Plasticity
  • Kinetic Partitioning Between Alternative Protein-Protein Interactions Controls a Transcriptional Switch
    Journal of Molecular Biology, Vol. 380, No. 1. (27 June 2008), pp. 223-236.
    by Huaying Zhao, Dorothy Beckett
    posted to transcriptional_regulation kinetics e_coli biophysics bacteria by jjray on 2008-06-10 21:44:42 as **
  • Inaugural Article: Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
    Proceedings of the National Academy of Sciences (4 June 2008), 0803151105.
    by Zachary D Blount, Christina Z Borland, Richard E Lenski
    posted to historical_contingency evolution e_coli by jjray on 2008-06-05 15:40:16 as read along with 7 people and 1 group adriandefroment MarioPaolucci jobriath OriginalLurch dbikard cambray skumagai Bacterial Genome Plasticity
  • PLEIOTROPIC EFFECTS OF BENEFICIAL MUTATIONS IN ESCHERICHIA COLI
    Evolution, Vol. 59, No. 11. (2005), pp. 2343-2352.
    by Elizabeth A Ostrowski, Daniel E Rozen, Richard E Lenski
    posted to pleiotropy evolution e_coli bacteria by jjray on 2008-05-22 16:52:43 as **
  • Stochastic Receptor Expression Allows Sensitive Bacteria to Evade Phage Attack. Part II: Theoretical Analyses
    Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. 4537-4548.
    by E Chapman-Mcquiston, XL Wu
    posted to stochastic receptor phenotypic_heterogeneity persister e_coli bacteria by jjray on 2008-05-14 22:45:00 as ** along with 1 person madhadron
  • Stochastic Receptor Expression Allows Sensitive Bacteria to Evade Phage Attack. Part I: Experiments
    Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. 4525-4536.
    by E Chapman-Mcquiston, XL Wu
    posted to stochastic receptor phenotypic_heterogeneity persister e_coli bacteria by jjray on 2008-05-14 22:44:46 as ** along with 1 person madhadron
  • Co-regulation of metabolic genes is better explained by flux coupling than by network distance.
    PLoS Comput Biol, Vol. 4, No. 1. (January 2008)
    by RA Notebaart, B Teusink, RJ Siezen, B Papp
    posted to saccharomyces_cerevisiae network metabolism gene_regulation gene_order e_coli by jjray on 2008-04-29 23:25:04 as ** along with 1 person maralena
  • Single-cell protein induction dynamics reveals a period of vulnerability to antibiotics in persister bacteria
    Proceedings of the National Academy of Sciences (21 April 2008), 0711712105.
    by Orit Gefen, Chana Gabay, Michael Mumcuoglu, Giora Engel, Nathalie Q Balaban
    posted to persister noise gene_expression e_coli bacteria by jjray on 2008-04-22 18:47:40 as ** along with 1 person madhadron
  • The TorR high-affinity binding site plays a key role in both torR autoregulation and torCAD operon expression in Escherichia coli.
    J Bacteriol, Vol. 182, No. 4. (February 2000), pp. 961-966.
    by M Ansaldi, G Simon, M Lepelletier, V Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 21:03:43 as **
  • Binding of the TorR regulator to cis-acting direct repeats activates tor operon expression.
    Mol Microbiol, Vol. 17, No. 5. (September 1995), pp. 971-980.
    by G Simon, C Jourlin, M Ansaldi, MC Pascal, M Chippaux, V Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 21:03:28 as **
  • Anticipating an alkaline stress through the Tor phosphorelay system in Escherichia coli.
    Mol Microbiol, Vol. 48, No. 1. (April 2003), pp. 211-223.
    by C Bordi, L Théraulaz, V Méjean, C Jourlin-Castelli
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 20:53:18 as **
  • An unsuspected autoregulatory pathway involving apocytochrome TorC and sensor TorS in Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 98, No. 20. (25 September 2001), pp. 11615-11620.
    by S Gon, C Jourlin-Castelli, L Théraulaz, V Méjean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 20:53:06 as **
  • Rapid Dephosphorylation of the TorR Response Regulator by the TorS Unorthodox Sensor in Escherichia coli
    J. Bacteriol., Vol. 183, No. 8. (15 April 2001), pp. 2691-2695.
    by Mireille Ansaldi, Cecile Jourlin-Castelli, Michele Lepelletier, Laurence Theraulaz, Vincent Mejean
    posted to e_coli gene_regulation tor two-component_system by jjray on 2008-03-27 20:52:42 as **
  • Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16305-16310.
    by Tim Miyashiro, Mark Goulian
    posted to e_coli gene_expression gene_regulation transcriptional_regulation two-component_system by jjray on 2008-03-26 22:00:05 as read
  • The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli
    Molecular and Cellular Biochemistry, Vol. 253, No. 1. (1 November 2003), pp. 167-177.
    by Surasri N Sahu, Sharmistha Acharya, Helina Tuminaro, Isha Patel, Kim Dudley, Eugene J Leclerc, Thomas A Cebula, Suman Mukhopadhyay
    posted to bacteria bara e_coli metabolism signaling two-component_system by jjray on 2008-02-18 19:44:04 as ** along with 1 person srfairclough
  • Instability of sensory histidine kinase mRNAs in Escherichia coli.
    Genes Cells, Vol. 8, No. 2. (February 2003), pp. 179-187.
    by T Aiso, R Ohki
    posted to bacteria e_coli mrna two-component_system by jjray on 2008-02-18 18:04:06 as read
  • Phosphotransfer circuitry of the putative multi-signal transducer, ArcB, of Escherichia coli: in vitro studies with mutants.
    Mol Microbiol, Vol. 18, No. 5. (December 1995), pp. 953-962.
    by M Tsuzuki, K Ishige, T Mizuno
    posted to bacteria e_coli signaling two-component_system by jjray on 2008-02-18 18:01:49 as **
  • A novel device of bacterial signal transducers.
    EMBO J, Vol. 13, No. 21. (1 November 1994), pp. 5195-5202.
    by K Ishige, S Nagasawa, S Tokishita, T Mizuno
    posted to bacteria bara e_coli signaling two-component_system by jjray on 2008-02-18 18:00:42 as read
  • A novel sensor-regulator protein that belongs to the homologous family of signal-transduction proteins involved in adaptive responses in Escherichia coli.
    Mol Microbiol, Vol. 6, No. 6. (March 1992), pp. 799-807.
    by S Nagasawa, S Tokishita, H Aiba, T Mizuno
    posted to bacteria bara e_coli two-component_system by jjray on 2008-02-18 17:59:02 as **
  • Transcriptional induction of the conserved alternative sigma factor RpoS in Escherichia coli is dependent on BarA, a probable two-component regulator.
    Mol Microbiol, Vol. 37, No. 2. (July 2000), pp. 371-381.
    by S Mukhopadhyay, JP Audia, RN Roy, HE Schellhorn
    posted to bacteria bara csra e_coli sigma_factor two-component_system by jjray on 2008-02-18 17:56:09 as read
  • The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli.
    Mol Cell Biochem, Vol. 253, No. 1-2. (November 2003), pp. 167-177.
    by SN Sahu, S Acharya, H Tuminaro, I Patel, K Dudley, JE LeClerc, TA Cebula, S Mukhopadhyay
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-18 17:53:57 as **
  • Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different?
    Mol Microbiol, Vol. 49, No. 1. (July 2003), pp. 1-9.
    by V Venturi
    posted to bacteria bara e_coli sigma_factor transcription by jjray on 2008-02-18 17:53:09 as read
  • The Escherichia coli BarA-UvrY two-component system is a virulence determinant in the urinary tract.
    BMC Microbiol, Vol. 6 (2006)
    by H Tomenius, AK Pernestig, K Jonas, D Georgellis, R Möllby, S Normark, O Melefors
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-18 17:50:26 as read
  • The BarA-UvrY two-component system regulates virulence in avian pathogenic Escherichia coli O78:K80:H9.
    Infect Immun, Vol. 74, No. 8. (August 2006), pp. 4900-4909.
    by CD Herren, A Mitra, SK Palaniyandi, A Coleman, S Elankumaran, S Mukhopadhyay
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-18 17:49:58 as read
  • Genetic and Biochemical Studies of Phosphatase Activity of PhoR
    J. Bacteriol., Vol. 185, No. 3. (1 February 2003), pp. 1112-1115.
    by Daniel O Carmany, Kristine Hollingsworth, William R Mccleary
    posted to bacteria e_coli two-component_system by jjray on 2008-02-11 18:16:38 as **
  • Genetic and functional characterization of the Escherichia coli BarA-UvrY two-component system: point mutations in the HAMP linker of the BarA sensor give a dominant-negative phenotype.
    J Bacteriol, Vol. 187, No. 21. (November 2005), pp. 7317-7324.
    by H Tomenius, AK Pernestig, CF Méndez-Catalá, D Georgellis, S Normark, O Melefors
    posted to bacteria bara csra e_coli two-component_system by jjray on 2008-02-08 16:22:25 as read
  • Macrodomain organization of the Escherichia coli chromosome.
    EMBO J, Vol. 23, No. 21. (27 October 2004), pp. 4330-4341.
    by M Valens, S Penaud, M Rossignol, F Cornet, F Boccard
    posted to bacteria chromosome_organization e_coli macrodomain by jjray on 2008-02-04 23:32:21 as read along with 1 person dbikard
  • Regulatory circuitry of the CsrA/CsrB and BarA/UvrY systems of Escherichia coli.
    J Bacteriol, Vol. 184, No. 18. (September 2002), pp. 5130-5140.
    by K Suzuki, X Wang, T Weilbacher, AK Pernestig, O Melefors, D Georgellis, P Babitzke, T Romeo
    posted to bara csra e_coli gene_order gene_regulation metabolism two-component_system by jjray on 2008-02-04 21:03:30 as read
  • The product of the pleiotropic Escherichia coli gene csrA modulates glycogen biosynthesis via effects on mRNA stability.
    J Bacteriol, Vol. 177, No. 10. (May 1995), pp. 2663-2672.
    by MY Liu, H Yang, T Romeo
    posted to csra e_coli mrna two-component_system by jjray on 2008-02-04 21:02:50 as **
  • It's a noisy business! Genetic regulation at the nanomolar scale
    Trends in Genetics, Vol. 15, No. 2. (1 February 1999), pp. 65-69.
    by Harley H Mcadams, Adam Arkin
    posted to e_coli gene_regulation gillespie_algorithm mathematical_model network noise review stochastic by jjray on 2007-06-04 18:18:49 as read along with 1 person rflrob
  • Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194.
    by Johan Elf, Gene-Wei Li, Sunney X Xie
    posted to biophysics e_coli gene_regulation transcription by jjray on 2007-05-25 19:47:51 as *** along with 7 people and 3 groups ras austin dpollard madhadron balabu nickluscombe samjlord EisenLab EBI-regulation moernerlab
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
    posted to e_coli metabolism robustness systems_approach by jjray on 2007-04-27 21:49:27 as read along with 4 people and 1 group IgorG raiyar dylan77 ytoya steinmetzlab
  • Hierarchy and feedback in the evolution of the Escherichia coli transcription network
    PNAS, Vol. 104, No. 13. (27 March 2007), pp. 5516-5520.
    by Cosentino, P Jona, B Bassetti, H Isambert
    posted to e_coli evolution feedback feedforward gene_regulation network_motifs systems_approach by jjray on 2007-04-10 19:33:31 as read along with 3 people dquest cjeans zwang
  • Combinatorial synthesis of genetic networks.
    Science, Vol. 296, No. 5572. (24 May 2002), pp. 1466-1470.
    by CC Guet, MB Elowitz, W Hsing, S Leibler
    posted to synthetic_biology network_motifs gene_regulation feedback e_coli by jjray on 2007-02-07 20:38:45 as read along with 5 people rklancer tmmurali monod johncumbers dbikard
  • Modeling network dynamics: the lac operon, a case study.
    J Cell Biol, Vol. 161, No. 3. (12 May 2003), pp. 471-476.
    by JM Vilar, CC Guet, S Leibler
    posted to systems_approach stochastic review quantitative_data noise network multiscale mathematical_model evolution ecology e_coli computation by jjray on 2007-02-02 19:32:22 as read along with 7 people and 2 groups rklancer jstajic bayesian balicea johncumbers wilsoros carmaus dIEMoSIRIS MoSi-Rostock
  • Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 1677-1691.
    by MA Savageau
    posted to demand_theory e_coli evolution gene_regulation mathematical_model systems_approach transcription by jjray on 2005-08-31 20:31:36 as read along with 1 person i41m
  • Demand theory of gene regulation. I. Quantitative development of the theory.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 1665-1676.
    by MA Savageau
    posted to demand_theory e_coli evolution gene_regulation mathematical_model transcription by jjray on 2005-08-31 20:30:14 as read along with 1 person i41m
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to dense_overlapping_regulon e_coli feedforward network network_motifs systems_approach transcription by jjray on 2005-08-30 19:25:14 as read along with 12 people and 1 group hannahrajasingh Borelli jstajic ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena EBI-regulation
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