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j3xucites Zhang [14 articles]

Recent papers posted to j3xucites library by the author Zhang. You can also see everyones Zhang.
  • MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Sitao Wu, Yang Zhang
    posted to protein threading by j3xucite on 2008-03-19 21:13:34 as ** along with 1 person chad_davis
  • Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
    Proteins, Vol. 56, No. 3. (15 August 2004), pp. 502-518.
    by J Skolnick, D Kihara, Y Zhang
    posted to threading by j3xucite on 2008-01-12 19:59:20 as ** along with 1 person schuylrp
  • TM-align: a protein structure alignment algorithm based on the TM-score.
    Nucleic Acids Res, Vol. 33, No. 7. (2005), pp. 2302-2309.
    by Y Zhang, J Skolnick
    posted to alignment structure by j3xucite on 2008-01-12 19:58:11 as ** along with 1 person aengisch
  • TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Biophys J, Vol. 85, No. 2. (August 2003), pp. 1145-1164.
    by Y Zhang, A Kolinski, J Skolnick
    posted to protein by j3xucite on 2007-11-08 16:18:05 as ** along with 1 person mkurc
  • The functional landscape of mouse gene expression.
    J Biol, Vol. 3, No. 5. (2004)
    by W Zhang, QD Morris, R Chang, O Shai, MA Bakowski, N Mitsakakis, N Mohammad, MD Robinson, R Zirngibl, E Somogyi, N Laurin, E Eftekharpour, E Sat, J Grigull, Q Pan, WT Peng, N Krogan, J Greenblatt, M Fehlings, D van der Kooy, J Aubin, BG Bruneau, J Rossant, BJ Blencowe, BJ Frey, TR Hughes
    posted to expression gene by j3xucite on 2007-09-21 03:50:35 as ** along with 5 people jyuh miguel Garamonfok gjuggler vidhya
  • Accurate prediction of protein torsion angles using chemical shifts and sequence homology
    Magnetic Resonance in Chemistry, Vol. 44, No. S1. (2006), pp. S158-S167.
    by Stephen Neal, Mark Berjanskii, Haiyan Zhang, David S Wishart
    posted to angle nmr by j3xucite on 2007-06-29 21:20:28 as ** along with 1 person dgruiz
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to protein interaction by j3xucite on 2007-02-07 21:00:21 as ** along with 21 people and 4 groups ethkim mapplab chasmand hplatero frohike carlk Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to protein interaction by j3xucite on 2007-02-07 20:58:31 as ** along with 23 people and 2 groups carlk ksiek kintoki ellakat frohike shikin dragonrez lfriedl balajis yoh koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
  • An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.
    Protein Science, Vol. 13, No. 2. (February 2004), pp. 400-411.
    by C Zhang, S Liu, H Zhou, Y Zhou
    posted to energy function by j3xucite on 2006-07-09 23:49:05 as ** along with 2 people kgutwin mirzazadeh
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Nucleic Acids Research, Vol. 25 (1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schaffer, J Madden, AA Schaffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to bibtex-import by j3xucite on 2006-07-03 20:16:58 as **
  • Three dimensional profiles for measuring compatibility of amino acid sequence with three dimensional structure
    Meth. Enzym. (1991), pp. 598-616.
    by JU Bowie, K Zhang, M Wilmanns, D Eisenberg
    posted to bibtex-import by j3xucite on 2006-07-03 20:16:58 as **
  • The protein structure prediction problem could be solved using the current PDB library.
    Proceedings of National Academy Sciences, USA, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to analysis protein structure by j3xucite on 2006-06-26 02:55:04 as ** along with 9 people and 3 groups neils karbak iakes vavi marcius alexg kracher schuylrp jfmuggs BioinfoCIPF Immunoinformatics SGU-CIPF
  • Automated structure prediction of weakly homologous proteins on a genomic scale
    PNAS, Vol. 101, No. 20. (18 May 2004), pp. 7594-7599.
    by Yang Zhang, Jeffrey Skolnick
    posted to prediction structure by j3xucite on 2006-06-09 20:25:17 as ** along with 3 people nigham wouterboomsma mirzazadeh
  • A global representation of the protein fold space.
    Proc Natl Acad Sci U S A, Vol. 100, No. 5. (4 March 2003), pp. 2386-2390.
    by J Hou, GE Sims, C Zhang, SH Kim
    posted to analysis protein structure by j3xucite on 2006-05-25 21:40:35 as ** along with 3 people and 2 groups ana iakes tny structural_bioinformatics Bioinformatics
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