indigoviolets genome [24 articles]

Nature, Vol. 438, No. 7069., pp. 803-819.

by Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas, Michael C Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K Wayne, Elaine A Ostrander, Chris P Ponting, Francis Galibert, Douglas R Smith, Pieter J Dejong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J Daly, David Decaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G Parker, John P Pollinger, Stephen MJ Searle, Nathan B Sutter, Rachael Thomas, Caleb Webber, Eric S Lander

posted to genome by indigoviolet on 2007-12-03 12:19:11 as along with 6 people and 7 groups aprasad easternblot dchughes neveaire mini1000srule djkt Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID Genetics-of-Gambling

Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.

by Drosophila Consortium

posted to annotation comparative drosophila fly genome by indigoviolet on 2007-12-03 06:57:55 as along with 15 people and 4 groups CharlesM PetrovLab operon tmmurali djkt timflutre stajich zwang Garamonfok lp2 hpaces caseybrown emptyhb urgi noor Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology

Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3643-3646.

by BJ Haas, AL Delcher, JR Wortman, SL Salzberg

posted to algorithm genome synteny by indigoviolet on 2007-11-29 11:41:34 as along with 3 people and 2 groups jwortman AaronDarling stajich EisenLab Berkeley Mycology

Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3156-3165.

by BY Liao, YJ Chang, JM Ho, MJ Hwang

posted to algorithm genome synteny by indigoviolet on 2007-11-29 11:41:14 as along with 1 person and 1 group stajich EisenLab

Nature, Vol. 430, No. 6995. (1 July 2004), pp. 35-44.

by B Dujon, D Sherman, G Fischer, P Durrens, S Casaregola, I Lafontaine, J De Montigny, C Marck, C Neuvéglise, E Talla, N Goffard, L Frangeul, M Aigle, V Anthouard, A Babour, V Barbe, S Barnay, S Blanchin, JM Beckerich, E Beyne, C Bleykasten, A Boisramé, J Boyer, L Cattolico, F Confanioleri, A De Daruvar, L Despons, E Fabre, C Fairhead, H Ferry-Dumazet, A Groppi, F Hantraye, C Hennequin, N Jauniaux, P Joyet, R Kachouri, A Kerrest, R Koszul, M Lemaire, I Lesur, L Ma, H Muller, JM Nicaud, M Nikolski, S Oztas, O Ozier-Kalogeropoulos, S Pellenz, S Potier, GF Richard, ML Straub, A Suleau, D Swennen, F Tekaia, M Wésolowski-Louvel, E Westhof, B Wirth, M Zeniou-Meyer, I Zivanovic, M Bolotin-Fukuhara, A Thierry, C Bouchier, B Caudron, C Scarpelli, C Gaillardin, J Weissenbach, P Wincker, JL Souciet

posted to genome by indigoviolet on 2007-11-29 11:36:17 as along with 4 people and 3 groups evaf dchughes maximilianh dbenn EisenLab G4ID Genetics-of-Gambling

Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.

by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,

posted to genome by indigoviolet on 2007-11-29 11:35:30 as along with 17 people and 2 groups OriginalLurch dkulp sdinka Cortel jwortman Dax42 aprasad ccots adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin elfar EisenLab Berkeley Mycology

Genome Inform, Vol. 17, No. 2. (2006), pp. 152-161.

by A Bhutkar, S Russo, TF Smith, WM Gelbart

posted to algorithm genome synteny by indigoviolet on 2007-11-29 10:58:51 as along with 1 person and 1 group dpollard EisenLab

Genome Biology, Vol. 8 (08 November 2007), R236.

by Arjun Bhutkar, William M Gelbart, Temple F Smith

posted to genome synteny by indigoviolet on 2007-11-29 10:58:33 as along with 4 people and 1 group dpollard balicea maximilianh hpaces EisenLab

Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.

by S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, K Thornton, MJ Hubisz, R Chen, RP Meisel, O Couronne, S Hua, MA Smith, P Zhang, J Liu, HJ Bussemaker, MF van Batenburg, SL Howells, SE Scherer, E Sodergren, BB Matthews, MA Crosby, AJ Schroeder, D Ortiz-Barrientos, CM Rives, ML Metzker, DM Muzny, G Scott, D Steffen, DA Wheeler, KC Worley, P Havlak, KJ Durbin, A Egan, R Gill, J Hume, MB Morgan, G Miner, C Hamilton, Y Huang, L Waldron, D Verduzco, KP Clerc-Blankenburg, I Dubchak, MA Noor, W Anderson, KP White, AG Clark, SW Schaeffer, W Gelbart, GM Weinstock, RA Gibbs

posted to genome by indigoviolet on 2007-11-29 09:54:02 as along with 8 people and 3 groups skumagai briann tsackton jshapiro operon penka adepace cisevol EisenLab Nie cis-regulatory-evolution

Genome Res., Vol. 12, No. 6. (1 June 2002), pp. 996-1006.

by James W Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, And D Haussler

posted to annotation genome by indigoviolet on 2007-11-29 02:06:23 as along with 1 person and 1 group jfr EisenLab

Genome Res, Vol. 13, No. 8. (August 2003), pp. 1904-1915.

by S Hoon, KK Ratnapu, JM Chia, B Kumarasamy, X Juguang, M Clamp, A Stabenau, S Potter, L Clarke, E Stupka

posted to annotation genome by indigoviolet on 2007-11-29 02:05:11 as along with 3 people and 1 group moborg dullhunk jermth EisenLab

Genome Biology, Vol. 3, No. 12. (2002), pp. research0081.1-0081.11.

by CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis

posted to annotation genome by indigoviolet on 2007-11-29 02:04:41 as along with 1 group EisenLab

Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1061-1067.

by Genis Parra, Keith Bradnam, Ian Korf

posted to annotation genome by indigoviolet on 2007-11-28 10:26:28 as along with 3 people and 2 groups stajich wenhan GustavoLacerda EisenLab Berkeley Mycology

Nature, Vol. 437, No. 7055., pp. 69-87.

by The

posted to genome by indigoviolet on 2007-11-24 09:23:52 as along with 9 people and 2 groups cannin chrn aprasad great_apes dullhunk djkt JeffR100 Garamonfok iris42 biodiversity_conservation EisenLab

Genome Res, Vol. 14, No. 5. (May 2004), pp. 925-928.

by E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, J Cuff, V Curwen, T Cutts, T Down, E Eyras, XM Fernandez-Suarez, P Gane, B Gibbins, J Gilbert, M Hammond, HR Hotz, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, H Lehvaslaiho, G McVicker, C Melsopp, P Meidl, E Mongin, R Pettett, S Potter, G Proctor, M Rae, S Searle, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, A Ureta-Vidal, KC Woodwark, G Cameron, R Durbin, A Cox, T Hubbard, M Clamp

posted to annotation genome by indigoviolet on 2007-11-24 07:40:10 as along with 6 people and 1 group mcgannd dragonrez chad_davis dullhunk incovoma Nilza EisenLab

Genome Biol, Vol. 7, No. 3. (2006)

by J Li, MM Riehle, Y Zhang, J Xu, F Oduol, SM Gomez, K Eiglmeier, BM Ueberheide, J Shabanowitz, DF Hunt, JM Ribeiro, KD Vernick

posted to annotation genome by indigoviolet on 2007-11-23 08:56:22 as along with 1 group EisenLab

Science, Vol. 296, No. 5565. (5 April 2002), pp. 92-100.

by SA Goff, D Ricke, TH Lan, G Presting, R Wang, M Dunn, J Glazebrook, A Sessions, P Oeller, H Varma, D Hadley, D Hutchison, C Martin, F Katagiri, BM Lange, T Moughamer, Y Xia, P Budworth, J Zhong, T Miguel, U Paszkowski, S Zhang, M Colbert, WL Sun, L Chen, B Cooper, S Park, TC Wood, L Mao, P Quail, R Wing, R Dean, Y Yu, A Zharkikh, R Shen, S Sahasrabudhe, A Thomas, R Cannings, A Gutin, D Pruss, J Reid, S Tavtigian, J Mitchell, G Eldredge, T Scholl, RM Miller, S Bhatnagar, N Adey, T Rubano, N Tusneem, R Robinson, J Feldhaus, T Macalma, A Oliphant, S Briggs

posted to annotation genome by indigoviolet on 2007-11-23 08:46:58 as along with 2 people and 1 group sdinka echinotrix EisenLab

Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1034-1045.

by Sanja Rogic, Francis BF Ouellette, Alan K Mackworth

posted to annotation gene-prediction genome protein-coding by indigoviolet on 2007-11-23 08:45:39 as along with 1 person and 1 group GustavoLacerda EisenLab

PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.

by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston

posted to annotation comparative genome protein-coding by indigoviolet on 2007-11-23 08:34:25 as along with 1 person and 3 groups ana structural_bioinformatics Bioinformatics EisenLab

posted to comparative evolution genome by indigoviolet on 2005-12-02 05:52:45 as along with 1 group EisenLab

posted to comparative gene genome prediction projector by indigoviolet on 2005-11-15 11:16:34 as along with 1 group EisenLab

Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 942-950.

by Val Curwen, Eduardo Eyras, Daniel T Andrews, Laura Clarke, Emmanuel Mongin, Steven M Searle, Michele Clamp

posted to annotation gene-prediction genome by indigoviolet on 2005-11-15 00:43:33 as along with 3 people and 1 group incovoma nicholso maximilianh EisenLab

posted to constraint genome hominid noncoding selection by indigoviolet on 2005-11-14 04:09:28 as along with 1 group EisenLab

posted to documentation genome gff gff2ps graphics postscript visualization by indigoviolet on 2005-11-14 02:12:35 as along with 1 group EisenLab