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indigoviolets gene-prediction [53 articles]

Neue Publikationen in indigoviolets Bibliothek eingetragen unter dem Bezeichner: gene-prediction. You can also see everyone's gene-prediction.
  • GeneComber: combining outputs of gene prediction programs for improved results
    Bioinformatics, Vol. 19, No. 10. (1 July 2003), pp. 1296-1297.
    by Sohrab P Shah, Graham P Mcvicker, Alan K Mackworth, Sanja Rogic, Francis BF Ouellette
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 11:44:07 as ** along with 1 group EisenLab
  • EGASP: the human ENCODE Genome Annotation Assessment Project.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, S Antonarakis, M Ashburner, VB Bajic, E Birney, R Castelo, E Eyras, C Ucla, TR Gingeras, J Harrow, T Hubbard, SE Lewis, MG Reese
    posted to evaluation gene-prediction by indigoviolet on 2007-12-03 10:49:11 as ** along with 3 people and 2 groups jfr wenhan timhubbard Bioinformatics EisenLab
  • Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by M Arumugam, C Wei, RH Brown, MR Brent
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:46:38 as ** along with 1 person and 1 group wenhan EisenLab
  • CONTRAST: de novo gene prediction using a semi-Markov conditional random field. Biomedical Computation at Stanford Symposium Proceedings (BCATS)
    (2005)
    by SS Gross, CB Do, S Batzoglou
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:27:25 as **
  • Gene finding with a hidden Markov model of genome structure and evolution.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 219-227.
    by JS Pedersen, J Hein
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:24:55 as ** along with 3 people and 2 groups redelings stajich azazello EisenLab MBLAB
  • Untitled
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:20:44 as **
  • Genome annotation: from sequence to biology.
    Nat Rev Genet, Vol. 2, No. 7. (July 2001), pp. 493-503.
    by L Stein
    posted to gene-prediction review by indigoviolet on 2007-12-03 10:19:03 as ** along with 1 person and 1 group dullhunk EisenLab
  • Computational prediction of eukaryotic protein-coding genes.
    Nat Rev Genet, Vol. 3, No. 9. (September 2002), pp. 698-709.
    by MQ Zhang
    posted to gene-prediction review by indigoviolet on 2007-12-03 10:13:40 as ** along with 3 people and 3 groups wenhan dchughes GustavoLacerda EisenLab G4ID Genetics-of-Gambling
  • The conserved exon method for gene finding.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 3-12.
    by V Bafna, DH Huson
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:02:41 as ** along with 1 person and 2 groups wenhan MBLAB EisenLab
  • Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
    Genome Res., Vol. 10, No. 7. (1 July 2000), pp. 950-958.
    by Serafim Batzoglou, Lior Pachter, Jill P Mesirov, Bonnie Berger, Eric S Lander
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:01:18 as ** along with 3 people and 2 groups wenhan j3xucite treangen MBLAB EisenLab
  • Comparative ab initio prediction of gene structures using pair HMMs.
    Bioinformatics, Vol. 18, No. 10. (October 2002), pp. 1309-1318.
    by IM Meyer, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:58:55 as ** along with 3 people and 2 groups wenhan azazello acarbo EisenLab MBLAB
  • SLAM web server for comparative gene finding and alignment.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3507-3509.
    by S Cawley, L Pachter, M Alexandersson
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:57:13 as ** along with 1 group EisenLab
  • SGP-1: prediction and validation of homologous genes based on sequence alignments.
    Genome Res, Vol. 11, No. 9. (September 2001), pp. 1574-1583.
    by T Wiehe, S Gebauer-Jung, T Mitchell-Olds, R Guigó
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:56:29 as ** along with 1 person and 1 group wenhan EisenLab
  • Gene recognition via spliced sequence alignment.
    Proc Natl Acad Sci U S A, Vol. 93, No. 17. (20 August 1996), pp. 9061-9066.
    by MS Gelfand, AA Mironov, PA Pevzner
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:53:35 as ** along with 1 person and 1 group wenhan EisenLab
  • GeneMark.hmm: new solutions for gene finding.
    Nucleic Acids Res, Vol. 26, No. 4. (15 February 1998), pp. 1107-1115.
    by AV Lukashin, M Borodovsky
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:52:55 as ** along with 1 person and 1 group wenhan EisenLab
  • Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach.
    Proc Natl Acad Sci U S A, Vol. 88, No. 24. (15 December 1991), pp. 11261-11265.
    by EC Uberbacher, RJ Mural
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:20:03 as ** along with 1 group EisenLab
  • Identification of human gene structure using linear discriminant functions and dynamic programming.
    Proc Int Conf Intell Syst Mol Biol, Vol. 3 (1995), pp. 367-375.
    by VV Solovyev, AA Salamov, CB Lawrence
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:50 as ** along with 1 group EisenLab
  • Identification of protein coding regions in the human genome by quadratic discriminant analysis.
    Proc Natl Acad Sci U S A, Vol. 94, No. 2. (21 January 1997), pp. 565-568.
    by MQ Zhang
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:38 as ** along with 1 person and 1 group wenhan EisenLab
  • Two methods for improving performance of an HMM and their application for gene finding.
    Proc Int Conf Intell Syst Mol Biol, Vol. 5 (1997), pp. 179-186.
    by A Krogh
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:26 as ** along with 1 person and 1 group wenhan EisenLab
  • Heuristic approach to deriving models for gene finding.
    Nucleic Acids Res, Vol. 27, No. 19. (1 October 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:15 as ** along with 4 people and 2 groups GustavoLacerda alexl azazello wenhan MBLAB EisenLab
  • Prediction of complete gene structures in human genomic DNA.
    J Mol Biol, Vol. 268, No. 1. (25 April 1997), pp. 78-94.
    by C Burge, S Karlin
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:06:56 as ** along with 9 people and 2 groups bandrewfox nklee pcahan1 kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso Bioinformatics EisenLab
  • Genie--gene finding in Drosophila melanogaster.
    Genome Res, Vol. 10, No. 4. (April 2000), pp. 529-538.
    by MG Reese, D Kulp, H Tammana, D Haussler
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 06:47:26 as ** along with 1 group EisenLab
  • Gene recognition by combination of several gene-finding programs.
    Bioinformatics, Vol. 14, No. 8. (1998), pp. 665-675.
    by K Murakami, T Takagi
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:29:51 as ** along with 1 group EisenLab
  • Human-mouse gene identification by comparative evidence integration and evolutionary analysis.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1190-1202.
    by L Zhang, V Pavlovic, CR Cantor, S Kasif
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:28:55 as ** along with 1 person and 2 groups azazello EisenLab MBLAB
  • Evaluation of gene structure prediction programs.
    Genomics, Vol. 34, No. 3. (15 June 1996), pp. 353-367.
    by M Burset, R Guigó
    posted to evaluation gene-prediction by indigoviolet on 2007-11-29 03:27:15 as ** along with 1 person and 2 groups wenhan MBLAB EisenLab
  • A Bayesian framework for combining gene predictions
    Bioinformatics, Vol. 18, No. 1. (1 January 2002), pp. 19-27.
    by Vladimir Pavlovic, Ashutosh Garg, Simon Kasif
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:27:01 as ** along with 1 group EisenLab
  • Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by S Djebali, F Delaplace, HR Crollius
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:51:21 as ** along with 1 person and 1 group dpollard EisenLab
  • Evaluation of five ab initio gene prediction programs for the discovery of maize genes
    pp. 445-460.
    by Hong Yao
    posted to evaluation gene-prediction by indigoviolet on 2007-11-28 10:51:04 as ** along with 1 group EisenLab
  • Genome annotation past, present, and future: how to define an ORF at each locus.
    Genome Res, Vol. 15, No. 12. (December 2005), pp. 1777-1786.
    by MR Brent
    posted to gene-prediction review by indigoviolet on 2007-11-28 10:50:42 as ** along with 3 people and 1 group textoris Ayest wenhan EisenLab
  • Conrad: Gene prediction using conditional random fields
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1389-1398.
    by David Decaprio, Jade P Vinson, Matthew D Pearson, Philip Montgomery, Matthew Doherty, James E Galagan
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:41:59 as ** along with 2 people and 1 group alexl wenhan EisenLab
  • ExonHunter: a comprehensive approach to gene finding.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by B Brejová, DG Brown, M Li, T Vinar
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:39:52 as ** along with 1 group EisenLab
  • Gene prediction with a hidden Markov model and a new intron submodel.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by M Stanke, S Waack
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:30:56 as ** along with 3 people and 2 groups stajich alexl wenhan EisenLab Berkeley Mycology
  • TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2878-2879.
    by WH Majoros, M Pertea, SL Salzberg
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:30:03 as ** along with 2 people and 1 group alexl GustavoLacerda EisenLab
  • An evaluation of contemporary hidden Markov model genefinders with a predicted exon taxonomy
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 317-324.
    by Knapp, Keith, Chen, Yi-Ping Phoebe
    posted to evaluation gene-prediction by indigoviolet on 2007-11-28 10:29:13 as ** along with 2 people and 1 group wenhan GustavoLacerda EisenLab
  • Evaluation of Gene-Finding Programs on Mammalian Sequences
    Genome Res., Vol. 11, No. 5. (1 May 2001), pp. 817-832.
    by Sanja Rogic, Alan K Mackworth, Francis B Ouellette
    posted to evaluation gene-prediction by indigoviolet on 2007-11-28 10:27:10 as ** along with 2 people and 1 group wenhan ep161302 EisenLab
  • Computational Inference of Homologous Gene Structures in the Human Genome
    Genome Res., Vol. 11, No. 5. (1 May 2001), pp. 803-816.
    by Ru-Fang Yeh, Lee P Lim, Christopher B Burge
    posted to gene-prediction by indigoviolet on 2007-11-28 10:26:44 as ** along with 1 person and 1 group GustavoLacerda EisenLab
  • Comparative gene prediction in human and mouse.
    Genome Res, Vol. 13, No. 1. (January 2003), pp. 108-117.
    by G Parra, P Agarwal, JF Abril, T Wiehe, JW Fickett, R Guigó
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:24:38 as ** along with 2 people and 2 groups azazello wenhan EisenLab MBLAB
  • GeneID in Drosophila
    Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 511-515.
    by Genis Parra, Enrique Blanco, Roderic Guigo
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:24:10 as ** along with 1 person and 1 group wenhan EisenLab
  • Vertebrate gene finding from multiple-species alignments using a two-level strategy.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by D Carter, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:18:21 as ** along with 2 people and 2 groups dpollard dmc EisenLab Durbin group
  • Computational approaches to gene prediction.
    J Microbiol, Vol. 44, No. 2. (April 2006), pp. 137-144.
    by JH Do, DK Choi
    posted to gene-prediction review by indigoviolet on 2007-11-28 01:24:00 as ** along with 1 person and 1 group GustavoLacerda EisenLab
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to gene-prediction review by indigoviolet on 2007-11-27 09:00:33 as ** along with 7 people and 3 groups jyuh dchughes wenhan zwang cabbagezs nklee ale EisenLab G4ID Genetics-of-Gambling
  • JIGSAW: integration of multiple sources of evidence for gene prediction
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3596-3603.
    by Jonathan E Allen, Steven L Salzberg
    posted to gene-prediction by indigoviolet on 2007-11-25 08:02:25 as ** along with 2 people and 1 group stajich wenhan EisenLab
  • A discriminative, phylogeny-free approach to multiple informant de novo gene prediction.
    Genome Biology
    by Ss Gross, Cb Do, M Sirota, S Batzoglou
    posted to algorithm gene-prediction by indigoviolet on 2007-11-24 12:02:43 as **
  • Improving gene recognition accuracy by combining predictions from two gene-finding programs
    Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1034-1045.
    by Sanja Rogic, Francis BF Ouellette, Alan K Mackworth
    posted to annotation gene-prediction genome protein-coding by indigoviolet on 2007-11-23 08:45:39 as ** along with 1 person and 1 group GustavoLacerda EisenLab
  • Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
    Bioinformatics (5 May 2007)
    by Avril Coghlan, Richard Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-11-07 10:19:18 as ** along with 3 people and 2 groups stajich GustavoLacerda dmc EisenLab Durbin group
  • Using multiple alignments to improve gene prediction.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 379-393.
    by SS Gross, MR Brent
    posted to gene-prediction review by indigoviolet on 2007-07-15 13:54:12 as ** along with 1 person and 1 group wenhan EisenLab
  • GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
    Genome Res., Vol. 12, No. 9. (1 September 2002), pp. 1418-1427.
    by Kevin L Howe, Tom Chothia, Richard Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-02-19 20:01:13 as ** along with 1 person and 1 group stajich EisenLab
  • Integrating genomic homology into gene structure prediction.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by I Korf, P Flicek, D Duan, MR Brent
    posted to algorithm gene-prediction by indigoviolet on 2006-12-04 03:48:45 as ** along with 2 people and 1 group dullhunk wenhan EisenLab
  • notes Genome annotation assessment in Drosophila melanogaster.
    Genome Res, Vol. 10, No. 4. (April 2000), pp. 483-501.
    by MG Reese, G Hartzell, NL Harris, U Ohler, JF Abril, SE Lewis
    posted to annotation evaluation gene-prediction by indigoviolet on 2006-12-04 03:45:03 as ** along with 1 person and 1 group wenhan EisenLab
  • Gene structure conservation aids similarity based gene prediction.
    Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 776-783.
    by IM Meyer, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2005-11-15 11:17:02 as **** along with 2 people and 1 group ep161302 acarbo EisenLab
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