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indigoviolets library [368 articles]

Neue Artikel in indigoviolets library ordered by importance.
  • Prospects for whole-genome linkage disequilibrium mapping of common disease genes.
    Nat Genet, Vol. 22, No. 2. (June 1999), pp. 139-144.
    by L Kruglyak
    posted to no-tag by indigoviolet on 2007-07-10 03:34:50 as ***** along with 1 group EisenLab
  • Advances in Genetics http://www.sciencedirect.com/science/bookseries/00652660
    posted to no-tag by indigoviolet on 2007-07-09 10:12:03 as ***** along with 1 group EisenLab
  • A gene-centric approach to genome-wide association studies
    Nature Reviews Genetics, Vol. 7, No. 11., pp. 885-891.
    by Eric Jorgenson, John S Witte
    posted to no-tag by indigoviolet on 2007-06-10 10:26:14 as ***** along with 5 people and 2 groups jyuh giovanni massivemayhem dbgrant jonsta247 EisenLab GeschwindLab
  • Genome-wide association studies: theoretical and practical concerns
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 109-118.
    by William YS Wang, Bryan J Barratt, David G Clayton, John A Todd
    posted to no-tag by indigoviolet on 2007-06-10 10:25:58 as ***** along with 5 people and 1 group oilcan pcahan1 tabu joepickrell massivemayhem EisenLab
  • Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis.
    Brief Bioinform, Vol. 6, No. 1. (March 2005), pp. 44-56.
    by S Mooney
    posted to no-tag by indigoviolet on 2007-06-10 10:33:27 as **** along with 2 groups Bioinformatics EisenLab
  • Genome-wide association studies for common diseases and complex traits
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 95-108.
    by Joel N Hirschhorn, Mark J Daly
    posted to no-tag by indigoviolet on 2007-06-10 10:33:16 as **** along with 4 people and 1 group caldavis oilcan massivemayhem dbgrant EisenLab
  • Linkage disequilibrium maps and association mapping.
    J Clin Invest, Vol. 115, No. 6. (June 2005), pp. 1425-1430.
    by NE Morton
    posted to no-tag by indigoviolet on 2007-06-10 10:32:46 as **** along with 1 group EisenLab
  • Strategies for the detection of copy number and other structural variants in the human genome.
    Hum Genomics, Vol. 2, No. 6. (June 2006), pp. 403-414.
    by AR Carson, L Feuk, M Mohammed, SW Scherer
    posted to no-tag by indigoviolet on 2007-06-10 10:31:07 as **** along with 1 person and 2 groups rdiaz Bioinformatics EisenLab
  • Clinical applications of whole-genome association studies: future applications at the bedside
    Expert Review of Molecular Diagnostics, Vol. 6, No. 4. (July 2006), pp. 551-565.
    by Motsinger, A Alison, Ritchie, D Marylyn, Dobrin, E Seth
    posted to no-tag by indigoviolet on 2007-06-10 10:30:39 as **** along with 1 group EisenLab
  • Phylogenomics: the beginning of incongruence?
    Trends Genet (18 February 2006)
    by Olivier Jeffroy, Henner Brinkmann, Frédéric Delsuc, Hervé Philippe
    posted to no-tag by indigoviolet on 2006-03-15 02:14:59 as **** along with 4 people and 4 groups aprasad dchughes taka kinestetika EisenLab G4ID microbiology_nijmegen Genetics-of-Gambling
  • Genome-Wide Prediction of C. elegans Genetic Interactions
    Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484.
    by Weiwei Zhong, Paul W Sternberg
    posted to no-tag by indigoviolet on 2006-03-10 03:13:46 as **** along with 6 people and 2 groups lfriedl xwbcn nirfriedman patrycjam patrycja_missiuro mingzhi kdl EisenLab
  • X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution.
    Genome Res (6 March 2006)
    by Kevin Thornton, Doris Bachtrog, Peter Andolfatto
    posted to no-tag by indigoviolet on 2006-03-09 01:44:10 as **** along with 1 person and 2 groups penka EisenLab Nie
  • Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
    Genome Res (6 March 2006)
    by Dmitry B B Malko, Vsevolod J J Makeev, Andrey A A Mironov, Mikhail S S Gelfand
    posted to no-tag by indigoviolet on 2006-03-09 01:43:41 as **** along with 4 people and 4 groups eoghanharr marcius penka stajich EisenLab Nie BioinfoCIPF SGU-CIPF
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to no-tag by indigoviolet on 2006-03-08 19:29:19 as **** along with 18 people and 7 groups stevanspringer kentsis bpb balajis ejeffery madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes.
    PLoS Comput Biol, Vol. 2, No. 3. (3 March 2006)
    by Mark Yandell, Chris J J Mungall, Chris Smith, Simon Prochnik, Joshua Kaminker, George Hartzell, Suzanna Lewis, Gerald M M Rubin
    posted to no-tag by indigoviolet on 2006-03-08 00:50:40 as **** along with 1 group EisenLab
  • The Origins of Eukaryotic Gene Structure
    Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468.
    by Michael Lynch
    posted to eukaryotic evolutionary gene structure by indigoviolet on 2006-03-01 01:38:30 as **** along with 22 people and 9 groups karbak stevanspringer dayjm Ayest tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
    posted to binding factor selex transcription by indigoviolet on 2006-02-26 00:56:38 as **** along with 4 people and 1 group emilyhare samal stsaft blobbybirdman EisenLab
  • Noncoding RNAs of Trithorax Response Elements Recruit Drosophila Ash1 to Ultrabithorax.
    Science, Vol. 311, No. 5764. (24 February 2006), pp. 1118-1123.
    by T Sanchez-Elsner, D Gou, E Kremmer, F Sauer
    posted to cis-regulation drosophila microrna transcription by indigoviolet on 2006-02-26 00:50:46 as **** along with 2 people and 1 group mtagaya gsrats EisenLab
  • Gene structure conservation aids similarity based gene prediction.
    Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 776-783.
    by IM Meyer, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2005-11-15 11:17:02 as **** along with 2 people and 1 group ep161302 acarbo EisenLab
  • The Case for Selection at CCR5-Delta32.
    PLoS Biol, Vol. 3, No. 11. (1 November 2005)
    by Pardis C C Sabeti, Emily Walsh, Steve F F Schaffner, Patrick Varilly, Ben Fry, Holli B B Hutcheson, Mike Cullen, Tarjei S S Mikkelsen, Jessica Roy, Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen Oʼbrien, Eric S S Lander
    posted to hiv selection by indigoviolet on 2005-11-15 04:29:26 as **** along with 2 people and 2 groups stevanspringer zukeboy EisenLab FAB-lab
  • A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression
    Nature, Vol. 438, No. 7065., pp. 220-223.
    by Scott A Rifkin, David Houle, Junhyong Kim, Kevin P White
    posted to evolution expression gene mutation by indigoviolet on 2005-11-13 02:56:41 as **** along with 7 people and 1 group dayjm dpollard adepace johncumbers djkt mimulus_99 caseybrown EisenLab
  • Adaptive Protein Evolution and Regulatory Divergence in Drosophila.
    Mol Biol Evol (14 March 2006)
    by Jeffrey M M Good, Celine A A Hayden, Travis J J Wheeler
    posted to no-tag by indigoviolet on 2006-03-20 01:08:06 as *** along with 1 person and 1 group ejeffery EisenLab
  • Why most published research findings are false.
    PLoS Med, Vol. 2, No. 8. (August 2005)
    by JP Ioannidis
    posted to no-tag by indigoviolet on 2006-03-15 02:13:34 as *** along with 35 people and 4 groups rklancer jyuh phnk sebpaquet incites garyfeng monod Borelli jmeppley chad_davis Najamuddin irinas mwyarbro ddahlem dullhunk madhadron balabu jiyu msierk Imat lmi_swap chenlc03 biblio24 pratap OriginalLurch cjeans feipan arne suizan jasonbobe lonettma buggle dnugent Malc elsbury ReadingLab EisenLab Sciences_communication_societe dIEMoSIRIS
  • "Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison
    Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 347-354.
    by Alexander E Vinogradov
    posted to no-tag by indigoviolet on 2006-03-02 06:59:43 as *** along with 5 people and 2 groups aprasad tuck penka miniprep lilou EisenLab Nie
  • Engineering gene networks to emulate Drosophila embryonic pattern formation.
    PLoS Biol, Vol. 3, No. 3. (March 2005)
    by M Isalan, C Lemerle, L Serrano
    posted to drosophila embryo patterns simulation synthetic_biology by indigoviolet on 2006-02-27 07:52:31 as *** along with 2 people and 2 groups rklancer livingthingdan EisenLab livingthing
  • Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia
    Nature, Vol. 439, No. 7077. (February 2006), pp. 728-732.
    by Jeremy A Lynch, Ava E Brent, David S Leaf, Anne, Claude Desplan
    posted to anterior expression maternal nasonia posterior wasp by indigoviolet on 2006-02-26 00:55:40 as *** along with 1 person and 1 group emilyhare EisenLab
  • Genome Biology | Full text | The design of transcription-factor binding sites is affected by combinatorial regulation
    posted to binding cis-regulation computational constraint factor transcription yeast by indigoviolet on 2005-12-06 03:51:51 as *** along with 1 group EisenLab
  • Using hexamers to predict cis-regulatory modules in Drosophila.
    BMC Bioinformatics, Vol. 6, No. 1. (27 October 2005)
    by Bob Y Chan, Dennis Kibler
    posted to algorithm enhancer-prediction by indigoviolet on 2005-11-18 06:30:11 as *** along with 4 people and 1 group brant troels_marstrand postrational wrowell EisenLab
  • Divergent selection and the evolution of signal traits and mating preferences.
    PLoS Biol, Vol. 3, No. 11. (November 2005)
    by HD Rundle, SF Chenoweth, P Doughty, MW Blows
    posted to drosophila evolution mating selection serrata by indigoviolet on 2005-11-15 04:31:44 as *** along with 2 people and 2 groups stevanspringer cmm EisenLab FAB-lab
  • GeneWise and Genomewise
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 988-995.
    by Ewan Birney, Michele Clamp, Richard Durbin
    posted to algorithm gene-prediction by indigoviolet on 2005-11-15 00:32:52 as *** along with 4 people and 2 groups azazello alexl wenhan Stew EisenLab MBLAB
  • Sex- and segment-specific modulation of gene expression profiles in Drosophila.
    Dev Biol (31 October 2005)
    by Olga Barmina, Martin Gonzalo, Lauren M M McIntyre, Artyom Kopp
    posted to drosophila sexspecific by indigoviolet on 2005-11-14 20:12:21 as *** along with 2 people and 1 group RMGraze balicea EisenLab
  • Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans.
    PLoS Biol, Vol. 3, No. 12. (15 November 2005)
    by Matthew V V Rockman, Matthew W W Hahn, Nicole Soranzo, Fritz Zimprich, David B B Goldstein, Gregory A A Wray
    posted to cis-regulation constraint human positive selection by indigoviolet on 2005-11-14 19:51:17 as *** along with 7 people and 3 groups imouthesmp dpollard Archaeogenetics happy_manatee djkt mgaldzic cisevol EisenLab CHIP cis-regulatory-evolution
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo.
    Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898.
    by O Crauk, N Dostatni
    posted to bicoid drosophila embryo expression factor gene gradient target transcription by indigoviolet on 2005-11-14 04:18:04 as *** along with 4 people and 1 group imouthesmp mystery balicea emptyhb EisenLab
  • PLoS Computational Biology: Selective constraint on noncoding regions of hominid genomes
    posted to constraint genome hominid noncoding selection by indigoviolet on 2005-11-14 04:09:28 as *** along with 1 group EisenLab
  • The Making of a Fly: The Genetics of Animal Design
    (15 April 1992)
    by Peter A Lawrence
    posted to no-tag by indigoviolet on 2007-12-15 03:00:50 as ** along with 1 group EisenLab
  • WebLogo: A Sequence Logo Generator
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1188-1190.
    by Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner
    posted to no-tag by indigoviolet on 2007-12-12 15:10:45 as ** along with 4 people and 2 groups analogAI xiaobeizhao sobolevnrm yevishere EisenLab baker-group
  • Sequence logos: a new way to display consensus sequences.
    Nucleic Acids Res, Vol. 18, No. 20. (25 October 1990), pp. 6097-6100.
    by TD Schneider, RM Stephens
    posted to no-tag by indigoviolet on 2007-12-12 15:07:59 as ** along with 2 people and 1 group analogAI yevishere EisenLab
  • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.
    J Mol Biol, Vol. 193, No. 4. (20 February 1987), pp. 723-750.
    by OG Berg, PH von Hippel
    posted to no-tag by indigoviolet on 2007-12-12 15:05:58 as ** along with 7 people and 2 groups zambujo brant jjray lusk discreteonyxorb cisevol Ema EisenLab cis-regulatory-evolution
  • An overview of the structures of protein-DNA complexes.
    Genome Biol, Vol. 1, No. 1. (2000)
    by NM Luscombe, SE Austin, HM Berman, JM Thornton
    posted to no-tag by indigoviolet on 2007-12-12 14:49:58 as ** along with 4 people and 1 group kaarsinogen medic0747 emptyhb jonsta247 EisenLab
  • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1747-1749.
    by CM Bergman, JW Carlson, SE Celniker
    posted to no-tag by indigoviolet on 2007-12-12 14:40:40 as ** along with 1 person and 2 groups yas EisenLab T_lab
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465.
    by T Beissbarth, TP Speed
    posted to no-tag by indigoviolet on 2007-12-12 14:40:11 as ** along with 5 people and 1 group Yanno miguel RMGraze jdiggans yevishere EisenLab
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to no-tag by indigoviolet on 2007-12-12 14:35:50 as ** along with 27 people and 5 groups CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 36-44.
    by K Tamura, S Subramanian, S Kumar
    posted to no-tag by indigoviolet on 2007-12-12 14:32:29 as ** along with 1 group EisenLab
  • Gene Recognition Via Spliced Sequence Alignment
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 17. (1996), pp. 9061-9066.
    by Mikhail S Gelfand, Andrey A Mironov, Pavel A Pevzner
    posted to no-tag by indigoviolet on 2007-12-12 14:20:24 as ** along with 1 group EisenLab
  • TRANSFAC: a database on transcription factors and their DNA binding sites.
    Nucleic Acids Res, Vol. 24, No. 1. (1 January 1996), pp. 238-241.
    by E Wingender, P Dietze, H Karas, R Knüppel
    posted to database by indigoviolet on 2007-12-12 14:09:36 as ** along with 2 people and 1 group ea dquest EisenLab
  • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.
    Science, Vol. 249, No. 4968. (3 August 1990), pp. 505-510.
    by C Tuerk, L Gold
    posted to no-tag by indigoviolet on 2007-12-12 14:09:06 as ** along with 1 person and 1 group leelarcombe EisenLab
  • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to algorithm motif by indigoviolet on 2007-12-12 14:01:38 as ** along with 3 people and 1 group tuck dquest lusk EisenLab
  • A computational genomics approach to the identification of gene networks
    Nucl. Acids Res., Vol. 25, No. 18. (15 September 1997), pp. 3594-3604.
    by A Wagner
    posted to motif by indigoviolet on 2007-12-12 11:05:07 as ** along with 1 group EisenLab
  • A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
    Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739.
    by BT Naughton, E Fratkin, S Batzoglou, DL Brutlag
    posted to motif by indigoviolet on 2007-12-12 11:00:03 as ** along with 3 people and 1 group xili03 nklee yevishere EisenLab
  • Combining evidence using p-values: application to sequence homology searches.
    Bioinformatics, Vol. 14, No. 1. (1998), pp. 48-54.
    by TL Bailey, M Gribskov
    posted to algorithm by indigoviolet on 2007-12-12 10:57:32 as ** along with 1 group EisenLab
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