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indigoviolets Zhang [15 articles]

Recent papers posted to indigoviolets library by the author Zhang. You can also see everyones Zhang.
  • Human-Mouse Alignments with BLASTZ
    Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 103-107.
    by Scott Schwartz, James W Kent, Arian Smit, Zheng Zhang, Robert Baertsch, Ross C Hardison, David Haussler, Webb Miller
    posted to algorithm alignment by indigoviolet on 2007-12-03 12:10:51 as ** along with 3 people and 1 group operon treangen nedwards EisenLab
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to algorithm alignment by indigoviolet on 2007-12-03 10:41:36 as ** along with 42 people and 4 groups granujilla newton1234 david_parsons edvin bandrewfox mariakmejia knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • Computational prediction of eukaryotic protein-coding genes.
    Nat Rev Genet, Vol. 3, No. 9. (September 2002), pp. 698-709.
    by MQ Zhang
    posted to gene-prediction review by indigoviolet on 2007-12-03 10:13:40 as ** along with 3 people and 3 groups wenhan dchughes GustavoLacerda EisenLab G4ID Genetics-of-Gambling
  • Identification of protein coding regions in the human genome by quadratic discriminant analysis.
    Proc Natl Acad Sci U S A, Vol. 94, No. 2. (21 January 1997), pp. 565-568.
    by MQ Zhang
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:38 as ** along with 1 person and 1 group wenhan EisenLab
  • Constraint and turnover in sex-biased gene expression in the genus Drosophila
    Nature, Vol. 450, No. 7167., pp. 233-237.
    by Yu Zhang, David Sturgill, Michael Parisi, Sudhir Kumar, Brian Oliver
    posted to comparative-genomics expression fly by indigoviolet on 2007-12-03 00:22:02 as ** along with 1 person and 2 groups dpollard EisenLab cis-regulatory-evolution
  • Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.
    by S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, K Thornton, MJ Hubisz, R Chen, RP Meisel, O Couronne, S Hua, MA Smith, P Zhang, J Liu, HJ Bussemaker, MF van Batenburg, SL Howells, SE Scherer, E Sodergren, BB Matthews, MA Crosby, AJ Schroeder, D Ortiz-Barrientos, CM Rives, ML Metzker, DM Muzny, G Scott, D Steffen, DA Wheeler, KC Worley, P Havlak, KJ Durbin, A Egan, R Gill, J Hume, MB Morgan, G Miner, C Hamilton, Y Huang, L Waldron, D Verduzco, KP Clerc-Blankenburg, I Dubchak, MA Noor, W Anderson, KP White, AG Clark, SW Schaeffer, W Gelbart, GM Weinstock, RA Gibbs
    posted to genome by indigoviolet on 2007-11-29 09:54:02 as ** along with 8 people and 3 groups skumagai briann tsackton jshapiro operon penka adepace cisevol EisenLab Nie cis-regulatory-evolution
  • Human-mouse gene identification by comparative evidence integration and evolutionary analysis.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1190-1202.
    by L Zhang, V Pavlovic, CR Cantor, S Kasif
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:28:55 as ** along with 1 person and 2 groups azazello EisenLab MBLAB
  • Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements
    BMC Bioinformatics, Vol. 8 (15 March 2007), 94.
    by Sung T Doh, Yunyu Zhang, Matthew H Temple, Li Cai
    posted to algorithm homology noncoding by indigoviolet on 2007-11-29 02:50:27 as ** along with 1 person and 1 group jyuh EisenLab
  • Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms.
    Genome Biol, Vol. 7, No. 3. (2006)
    by J Li, MM Riehle, Y Zhang, J Xu, F Oduol, SM Gomez, K Eiglmeier, BM Ueberheide, J Shabanowitz, DF Hunt, JM Ribeiro, KD Vernick
    posted to annotation genome by indigoviolet on 2007-11-23 08:56:22 as ** along with 1 group EisenLab
  • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
    Science, Vol. 296, No. 5565. (5 April 2002), pp. 92-100.
    by SA Goff, D Ricke, TH Lan, G Presting, R Wang, M Dunn, J Glazebrook, A Sessions, P Oeller, H Varma, D Hadley, D Hutchison, C Martin, F Katagiri, BM Lange, T Moughamer, Y Xia, P Budworth, J Zhong, T Miguel, U Paszkowski, S Zhang, M Colbert, WL Sun, L Chen, B Cooper, S Park, TC Wood, L Mao, P Quail, R Wing, R Dean, Y Yu, A Zharkikh, R Shen, S Sahasrabudhe, A Thomas, R Cannings, A Gutin, D Pruss, J Reid, S Tavtigian, J Mitchell, G Eldredge, T Scholl, RM Miller, S Bhatnagar, N Adey, T Rubano, N Tusneem, R Robinson, J Feldhaus, T Macalma, A Oliphant, S Briggs
    posted to annotation genome by indigoviolet on 2007-11-23 08:46:58 as ** along with 2 people and 1 group sdinka echinotrix EisenLab
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to algorithm enhancer-prediction by indigoviolet on 2007-11-19 10:13:21 as ** along with 9 people and 1 group sconlan dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee xili03 EisenLab
  • Boosting with stumps for predicting transcription start sites
    Genome Biology, Vol. 8 (02 February 2007), R17.
    by Xiaoyue Zhao, Zhenyu Xuan, Michael Q Zhang
    posted to no-tag by indigoviolet on 2007-02-09 10:20:12 as ** along with 2 people and 1 group carlk leelisax EisenLab
  • WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by G Wang, T Yu, W Zhang
    posted to no-tag by indigoviolet on 2007-01-29 08:50:06 as ** along with 2 people and 1 group ep161302 natstreet EisenLab
  • Community annotation: Procedures, protocols, and supporting tools.
    Genome Res (25 October 2006)
    by Christine G G Elsik, Kim C C Worley, Lan Zhang, Natalia V V Milshina, Huaiyang Jiang, Justin T T Reese, Kevin L L Childs, Anand Venkatraman, C Michael M Dickens, George M M Weinstock, Richard A A Gibbs
    posted to no-tag by indigoviolet on 2006-12-04 10:21:28 as ** along with 2 people and 1 group brant plofje EisenLab
  • A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements
    Genome Biology, Vol. 7 (20 June 2006), R49.
    by Guandong Wang, Weixiong Zhang
    posted to no-tag by indigoviolet on 2006-07-14 07:36:15 as ** along with 2 people and 1 group dquest ale EisenLab
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