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indigoviolets Smith [10 articles]

Recent papers posted to indigoviolets library by the author Smith. You can also see everyones Smith.
  • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    Nature, Vol. 438, No. 7069., pp. 803-819.
    by Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas, Michael C Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K Wayne, Elaine A Ostrander, Chris P Ponting, Francis Galibert, Douglas R Smith, Pieter J Dejong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J Daly, David Decaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G Parker, John P Pollinger, Stephen MJ Searle, Nathan B Sutter, Rachael Thomas, Caleb Webber, Eric S Lander
    posted to genome by indigoviolet on 2007-12-03 12:19:11 as ** along with 6 people and 7 groups aprasad easternblot dchughes neveaire mini1000srule djkt Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID Genetics-of-Gambling
  • Initial sequencing and comparative analysis of the mouse genome.
    Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.
    by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,
    posted to genome by indigoviolet on 2007-11-29 11:35:30 as ** along with 17 people and 2 groups OriginalLurch dkulp sdinka Cortel jwortman Dax42 aprasad ccots adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin elfar EisenLab Berkeley Mycology
  • Techniques for multi-genome synteny analysis to overcome assembly limitations.
    Genome Inform, Vol. 17, No. 2. (2006), pp. 152-161.
    by A Bhutkar, S Russo, TF Smith, WM Gelbart
    posted to algorithm genome synteny by indigoviolet on 2007-11-29 10:58:51 as ** along with 1 person and 1 group dpollard EisenLab
  • Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study
    Genome Biology, Vol. 8 (08 November 2007), R236.
    by Arjun Bhutkar, William M Gelbart, Temple F Smith
    posted to genome synteny by indigoviolet on 2007-11-29 10:58:33 as ** along with 5 people and 1 group isimpson dpollard balicea maximilianh hpaces EisenLab
  • Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18.
    by S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, K Thornton, MJ Hubisz, R Chen, RP Meisel, O Couronne, S Hua, MA Smith, P Zhang, J Liu, HJ Bussemaker, MF van Batenburg, SL Howells, SE Scherer, E Sodergren, BB Matthews, MA Crosby, AJ Schroeder, D Ortiz-Barrientos, CM Rives, ML Metzker, DM Muzny, G Scott, D Steffen, DA Wheeler, KC Worley, P Havlak, KJ Durbin, A Egan, R Gill, J Hume, MB Morgan, G Miner, C Hamilton, Y Huang, L Waldron, D Verduzco, KP Clerc-Blankenburg, I Dubchak, MA Noor, W Anderson, KP White, AG Clark, SW Schaeffer, W Gelbart, GM Weinstock, RA Gibbs
    posted to genome by indigoviolet on 2007-11-29 09:54:02 as ** along with 8 people and 3 groups skumagai briann tsackton jshapiro operon penka adepace cisevol EisenLab Nie cis-regulatory-evolution
  • An integrated computational pipeline and database to support whole-genome sequence annotation
    Genome Biology, Vol. 3, No. 12. (2002), pp. research0081.1-0081.11.
    by CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis
    posted to annotation genome by indigoviolet on 2007-11-29 02:04:41 as ** along with 1 group EisenLab
  • An overview of Ensembl.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 925-928.
    by E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, J Cuff, V Curwen, T Cutts, T Down, E Eyras, XM Fernandez-Suarez, P Gane, B Gibbins, J Gilbert, M Hammond, HR Hotz, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, H Lehvaslaiho, G McVicker, C Melsopp, P Meidl, E Mongin, R Pettett, S Potter, G Proctor, M Rae, S Searle, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, A Ureta-Vidal, KC Woodwark, G Cameron, R Durbin, A Cox, T Hubbard, M Clamp
    posted to annotation genome by indigoviolet on 2007-11-24 07:40:10 as ** along with 6 people and 1 group mcgannd dragonrez chad_davis dullhunk incovoma Nilza EisenLab
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to algorithm enhancer-prediction by indigoviolet on 2007-11-19 10:13:21 as ** along with 9 people and 1 group sconlan dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee xili03 EisenLab
  • Prediction of gene structure.
    J Mol Biol, Vol. 226, No. 1. (5 July 1992), pp. 141-157.
    by R Guigó, S Knudsen, N Drake, T Smith
    posted to gene prediction by indigoviolet on 2007-07-15 13:52:20 as ** along with 1 person and 1 group wenhan EisenLab
  • Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes.
    PLoS Comput Biol, Vol. 2, No. 3. (3 March 2006)
    by Mark Yandell, Chris J J Mungall, Chris Smith, Simon Prochnik, Joshua Kaminker, George Hartzell, Suzanna Lewis, Gerald M M Rubin
    posted to no-tag by indigoviolet on 2006-03-08 00:50:40 as **** along with 1 group EisenLab
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