An integrated computational pipeline and database to support whole-genome sequence annotation

by: CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis

Genome Biology, Vol. 3, No. 12. (2002), pp. research0081.1-0081.11.

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Abstract

We describe here our experience in annotating the Drosophila melanogaster genome sequence, in the course of which we developed several new open-source software tools and a database schema to support large-scale genome annotation. We have developed these into an integrated and reusable software system for whole-genome annotation. The key contributions to overall annotation quality are the marshalling of high-quality sequences for alignments and the design of a system with an adaptable and expandable flexible architecture.

@article{citeulike:2009246, abstract = {We describe here our experience in annotating the Drosophila melanogaster genome sequence, in the course of which we developed several new open-source software tools and a database schema to support large-scale genome annotation. We have developed these into an integrated and reusable software system for whole-genome annotation. The key contributions to overall annotation quality are the marshalling of high-quality sequences for alignments and the design of a system with an adaptable and expandable flexible architecture.}, author = {Mungall, C. J. and Misra, S. and Berman, B. P. and Carlson, J. and Frise, E. and Harris, N. and Marshall, B. and Shu, S. and Kaminker, J. S. and Prochnik, S. E. and Smith, C. D. and Smith, E. and Tupy, J. L. and Wiel, C. and Rubin, G. M. and Lewis, S. E. }, citeulike-article-id = {2009246}, doi = {10.1186/gb-2002-3-12-research0081}, journal = {Genome Biology}, keywords = {annotation, genome}, number = {12}, pages = {research0081.1--0081.11}, posted-at = {2007-11-29 02:04:41}, priority = {2}, title = {An integrated computational pipeline and database to support whole-genome sequence annotation}, url = {http://dx.doi.org/10.1186/gb-2002-3-12-research0081}, volume = {3}, year = {2002} }

RIS record

TY - JOUR ID - citeulike:2009246 L3 - citeulike-article-id:2009246 TI - An integrated computational pipeline and database to support whole-genome sequence annotation JF - Genome Biology VL - 3 IS - 12 SP - research0081.1 EP - 0081.11 N2 - We describe here our experience in annotating the Drosophila melanogaster genome sequence, in the course of which we developed several new open-source software tools and a database schema to support large-scale genome annotation. We have developed these into an integrated and reusable software system for whole-genome annotation. The key contributions to overall annotation quality are the marshalling of high-quality sequences for alignments and the design of a system with an adaptable and expandable flexible architecture. KW - annotation KW - genome AU - Mungall, CJ AU - Misra, S AU - Berman, BP AU - Carlson, J AU - Frise, E AU - Harris, N AU - Marshall, B AU - Shu, S AU - Kaminker, JS AU - Prochnik, SE AU - Smith, CD AU - Smith, E AU - Tupy, JL AU - Wiel, C AU - Rubin, GM AU - Lewis, SE PY - 2002/// UR - http://dx.doi.org/10.1186/gb-2002-3-12-research0081 ER -

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