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ihparks library [36 articles]

Neue Artikel in ihparks Bibliothek.
  • MMG: a probabilistic tool to identify submodules of metabolic pathways
    Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1078-1084.
    by Guido Sanguinetti, Josselin Noirel, Phillip C Wright
    posted to network by ihpark on 2008-10-27 08:01:13 as ** along with 3 people jyuh tmmurali mdstobbe
  • Gene-set analysis and reduction
    Brief Bioinform (4 October 2008), bbn042.
    by Irina Dinu, John D Potter, Thomas Mueller, Qi Liu, Adeniyi J Adewale, Gian S Jhangri, Gunilla Einecke, Konrad S Famulski, Philip Halloran, Yutaka Yasui
    posted to gene_set by ihpark on 2008-10-27 06:23:02 as ** along with 3 people jyuh nuin ptrobajo
  • Gene-set approach for expression pattern analysis
    Brief Bioinform (17 January 2008), bbn001.
    by Dougu Nam, Seon-Young Kim
    posted to gene_set by ihpark on 2008-10-27 06:22:37 as ** along with 12 people ptrobajo jyuh seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
  • How accurately can we control the FDR in analyzing microarray data?
    Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1730-1736.
    by SH Jung, W Jang
    posted to deg by ihpark on 2008-10-26 08:46:59 as ** along with 2 people jfr justescaped
  • Linear models and empirical bayes methods for assessing differential expression in microarray experiments.
    Stat Appl Genet Mol Biol, Vol. 3, No. 1. (2004)
    by GK Smyth
    posted to deg by ihpark on 2008-10-26 08:23:12 as ** along with 9 people giovenko RMGraze maryee mayercd justescaped ugengma heliopais jyuh talponer
  • Significance analysis of microarrays applied to the ionizing radiation response.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121.
    by VG Tusher, R Tibshirani, G Chu
    posted to deg by ihpark on 2008-10-26 08:20:45 as ** along with 13 people bassene frohike paszkows miguel jen_drake gpalidwor olympos ccr incovoma ugengma shikin askrajiv renatomilani
  • Extensions to gene set enrichment
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 306-313.
    by Zhen Jiang, Robert Gentleman
    posted to statistics by ihpark on 2008-10-22 08:44:41 as ** along with 7 people and 1 group aviad_work ealloza djkt waghsk heliopais giovenko magusina BioinfoCIPF
  • Biclustering Algorithms: A Survey
    Handbook of Computational Molecular Biology (2004)
    by A Tanay, R Sharan, R Shamir
    edited by Srinivas
    posted to biclustering by ihpark on 2008-10-22 06:54:38 as **
  • Discovering local structure in gene expression data: the order-preserving submatrix problem.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 10, No. 3-4. (2003), pp. 373-384.
    by A Ben-Dor, B Chor, R Karp, Z Yakhini
    posted to biclustering by ihpark on 2008-10-22 03:01:51 as ** along with 1 person umit
  • Biclustering algorithms for biological data analysis: a survey
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (2004), pp. 24-45.
    by SC Madeira, AL Oliveira
    posted to biclustering by ihpark on 2008-10-22 03:00:04 as ** along with 8 people tvdbulck librain dps bozdagd ealloza carlk chrisamiller tmmurali
  • An efficient semi-unsupervised gene selection method via spectral biclustering
    NanoBioscience, IEEE Transactions on, Vol. 5, No. 2. (2006), pp. 110-114.
    by Bing Liu, C Wan, Lipo Wang
    posted to biclustering by ihpark on 2008-10-22 02:54:15 as **
  • Group-Biomarkers Identification in Ovarian Carcinoma
    Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on, Vol. 1 (2007), pp. I-341-I-344.
    by AB Tchagang, AH Tewfik, APN Skubitz, K Skubitz
    posted to biclustering by ihpark on 2008-10-22 02:53:00 as **
  • Coupled two-way clustering analysis of gene microarray data.
    Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12079-12084.
    by G Getz, E Levine, E Domany
    posted to biclustering by ihpark on 2008-10-21 06:36:52 as ** along with 4 people and 1 group wnpx caporaso shikin tvdbulck biomedical-nlp
  • Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data
    Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1079-1089.
    by Gad Getz, Hilah Gal, Itai Kela, Daniel A Notterman, Eytan Domany
    posted to biclustering by ihpark on 2008-10-21 06:36:31 as **
  • A systematic comparison and evaluation of biclustering methods for gene expression data
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1122-1129.
    by Amela Prelic, Stefan Bleuler, Philip Zimmermann, Anja Wille, Peter Buhlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele, Eckart Zitzler
    posted to biclustering by ihpark on 2008-10-21 04:57:45 as **
  • Computing the maximum similarity bi-clusters of gene expression data
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 50-56.
    by Liu, Xiaowen, Wang, Lusheng
    posted to biclustering by ihpark on 2008-10-21 04:52:42 as **
  • Robust and efficient identification of biomarkers by classifying features on graphs
    Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2023-2029.
    by Taehyun Hwang, Hugues Sicotte, Ze Tian, Baolin Wu, Jean-Pierre Kocher, Dennis A Wigle, Vipin Kumar, Rui Kuang
    posted to biclustering by ihpark on 2008-10-20 11:56:38 as ** along with 7 people jyuh jfr nuin GeeSharpMinor mitko AbnerCYH sg45653
  • Shifting and scaling patterns from gene expression data
    Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3840-3845.
    by Jesus S Aguilar-Ruiz
    posted to biclustering by ihpark on 2008-10-20 11:50:59 as **
  • Discovering statistically significant biclusters in gene expression data.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by A Tanay, R Sharan, R Shamir
    posted to biclustering by ihpark on 2008-10-20 07:21:11 as ** along with 9 people and 2 groups ggrot okarsligil lfriedl incovoma dps dragonrez tvdbulck carlk librain kdl Bioinformatics
  • Human protein reference database--2006 update.
    Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006)
    by GR Mishra, M Suresh, K Kumaran, N Kannabiran, S Suresh, P Bala, K Shivakumar, N Anuradha, R Reddy, TM Raghavan, S Menon, G Hanumanthu, M Gupta, S Upendran, S Gupta, M Mahesh, B Jacob, P Mathew, P Chatterjee, KS Arun, S Sharma, KN Chandrika, N Deshpande, K Palvankar, R Raghavnath, R Krishnakanth, H Karathia, B Rekha, R Nayak, G Vishnupriya, HG Kumar, M Nagini, GS Kumar, R Jose, P Deepthi, SS Mohan, TK Gandhi, HC Harsha, KS Deshpande, M Sarker, TS Prasad, A Pandey
    posted to database by ihpark on 2008-10-16 12:13:38 as ** along with 1 person TheresaNiederberger
  • Biclustering of expression data.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 93-103.
    by Y Cheng, GM Church
    posted to biclustering by ihpark on 2008-10-16 08:28:24 as ** along with 3 people wnpx tvdbulck dragonrez
  • A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Kartik M Mani, Celine Lefebvre, Kai Wang, Wei K Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano
    posted to method by ihpark on 2008-10-16 05:08:50 as ** along with 6 people jfr tmmurali ealloza shikin dap5087 dragonrez
  • A role for cyclin A1 in mediating the autocrine expression of vascular endothelial growth factor in prostate cancer
    Oncogene, Vol. aop, No. current.
    by Barbara Wegiel, Anders Bjartell, Jenny Ekberg, Virgil Gadaleanu, Cecilia Brunhoff, Jenny L Persson, Jenny L Persson
    posted to evidence by ihpark on 2008-10-14 14:09:24 as ** along with 1 person eisei
  • Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2273-2280.
    by Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sultmann, Achim Tresch
    posted to biclustering by ihpark on 2008-10-13 05:41:09 as ***** along with 3 people and 1 group jfr rdiaz ealloza BioinfoCIPF
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to copa by ihpark on 2008-10-06 06:32:13 as ** along with 20 people and 3 groups ggallone giovenko winterschlaefer isimpson bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Jarman Lab Bioinformatics GeneGo
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to copa by ihpark on 2008-10-06 06:11:24 as ** along with 23 people and 4 groups chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Early detection of ovarian cancer using group biomarkers
    Mol Cancer Ther, Vol. 7, No. 1. (1 January 2008), pp. 27-37.
    by Alain B Tchagang, Ahmed H Tewfik, Melissa S Derycke, Keith M Skubitz, Amy P Skubitz
    posted to copa by ihpark on 2008-10-06 05:09:34 as **
  • Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
    Genome Research, Vol. 13, No. 4. (April 2003), pp. 703-716.
    by Yuval Kluger, Ronen Basri, Joseph T Chang, Mark Gerstein
    posted to copa by ihpark on 2008-10-06 02:57:27 as **
  • MOST: detecting cancer differential gene expression
    Biostat (29 November 2007), kxm042.
    by Heng Lian
    posted to copa by ihpark on 2008-10-05 08:25:53 as ** along with 1 person aviad_work
  • Cancer outlier differential gene expression detection.
    Biostatistics (4 October 2006)
    by Baolin Wu
    posted to copa by ihpark on 2008-10-05 08:25:07 as ** along with 2 people jfr shigepong
  • Outlier sums for differential gene expression analysis
    Biostatistics, Vol. 8, No. 1. (January 2007), pp. 2-8.
    by Tibshirani, Robert, Hastie, Trevor
    posted to copa by ihpark on 2008-10-05 08:24:26 as **
  • Cancer outlier detection based on likelihood ratio test
    Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2193-2199.
    by Jianhua Hu
    posted to copa by ihpark on 2008-10-05 08:22:47 as ** along with 1 person nuin
  • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648.
    by SA Tomlins, DR Rhodes, S Perner, SM Dhanasekaran, R Mehra, XW Sun, S Varambally, X Cao, J Tchinda, R Kuefer, C Lee, JE Montie, RB Shah, KJ Pienta, MA Rubin, AM Chinnaiyan
    posted to copa by ihpark on 2008-10-05 08:17:09 as ** along with 6 people kentsis jfr tuck emb51 oelemento winterschlaefer
  • Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 531-537.
    by T Golub, D Slonim, P Tamayo, C Huard, M Gaasenbeek, J Mesirov, H Coller, M Loh, J Downing, M Caligiuri, C Bloomfield, E Lander
    posted to copa by ihpark on 2008-10-04 05:48:38 as ** along with 15 people and 1 group ctaraujo gabe_rosser winterschlaefer hhhhssss balajis sdvillal archroad giovanni santhosh ugengma wtribbey jo_davies akastrin zchen raiyar GeschwindLab
  • A systems biology approach for pathway level analysis
    Genome Research, Vol. 17, No. 10. (September 2007), 1537.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to copa by ihpark on 2008-10-03 10:26:30 as **
  • Genomic outlier profile analysis: mixture models, null hypotheses, and nonparametric estimation.
    Biostatistics (Oxford, England) (6 June 2008)
    by Debashis Ghosh, Arul M M Chinnaiyan
    posted to copa by ihpark on 2008-10-03 06:37:56 as ***** along with 1 person jyuh
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