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heliopais microrna_target_prediction [58 articles]

Neue Publikationen in heliopais Bibliothek eingetragen unter dem Bezeichner: microrna_target_prediction. You can also see everyone's microrna_target_prediction.
  • A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
    Proceedings of the National Academy of Sciences (23 September 2008)
    by Joshua J Forman, Aster Legesse-Miller, Hilary A Coller
    posted to microrna_target_prediction microrna by heliopais on 2008-10-01 13:44:43 as ** along with 1 person and 2 groups bootsy microRNA BenosLab
  • Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
    Nucleic Acids Research, Vol. 34, No. 16. (31 August 2006), e17.
    by Jeppe Vinther, Mads MM Hedegaard, Paul PP Gardner, Jens SS Andersen, Peter Arctander
    posted to microrna_target_prediction microrna_silac microrna by heliopais on 2008-09-29 17:07:03 as ** along with 2 people and 1 group tardigrade andersbj microRNA
  • Molecular basis for target RNA recognition and cleavage by human RISC
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 101-112.
    by SL Ameres, J Martinez, R Schroeder
    posted to microrna_target_prediction microrna by heliopais on 2008-09-19 16:53:58 as **** along with 1 group microRNA
  • A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans.
    Current Biology, Vol. 16, No. 5. (1 February 2006), pp. 460-471.
    by Sabbi Lall, Dominic Grün, Azra Krek, Kevin Chen, Yi-Lu L Wang, Colin NN Dewey, Pranidhi Sood, Teresa Colombo, Nicolas Bray, Philip Macmenamin, Huey-Ling L Kao, Kristin CC Gunsalus, Lior Pachter, Fabio Piano, Nikolaus Rajewsky
    posted to microrna_target_prediction microrna by heliopais on 2008-09-19 15:17:47 as ** along with 4 people and 4 groups tharris marcius andersbj mtagaya C. elegans / WormBase microRNA BioinfoCIPF SGU-CIPF
  • A computational view of microRNAs and their targets.
    Drug Discovery Today, Vol. 10, No. 8. (15 April 2005), pp. 595-601.
    by JR Brown, P Sanseau
    posted to microrna_target_prediction microrna by heliopais on 2008-09-19 14:36:52 as read along with 1 person and 1 group eckart_bindewald microRNA
  • Prediction and validation of microRNAs and their targets.
    FEBS Letters, Vol. 579, No. 26. (30 September 2005), pp. 5904-5910.
    by I Bentwich
    posted to microrna_target_prediction microrna_gene_finding microrna by heliopais on 2008-09-19 14:11:36 as ** along with 5 people and 2 groups jfr mortenlindow mtagaya cdawson Garamonfok microRNA GIG
  • Isolation of microRNA targets by miRNP immunopurification
    RNA, Vol. 13, No. 8. (25 June 2007), pp. 1198-1204.
    by George Easow, Aurelio A Teleman, Stephen M Cohen
    posted to mirnp_immunopurification microrna_target_prediction microrna by heliopais on 2008-09-19 14:00:52 as ** along with 1 group microRNA
  • mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.
    Nature Methods, Vol. 5 (17 August 2008), pp. 813-819.
    by Molly Hammell, Dang Long, Liang Zhang, Andrew Lee, Steven, Min Han, Ye Ding, Victor Ambros
    posted to microrna_target_prediction microrna by heliopais on 2008-09-17 16:49:01 as ** along with 1 person and 1 group maralena microRNA
  • Target practice
    Nature Methods, Vol. 5, No. 9. (September 2008), pp. 749-750.
    posted to microrna_target_prediction microrna by heliopais on 2008-09-04 12:00:25 as ** along with 1 group microRNA
  • Identification of human microRNA targets from isolated argonaute protein complexes.
    RNA biology, Vol. 4, No. 2. (28 June 2007), pp. 76-84.
    by M Beitzinger, L Peters, JY Zhu, E Kremmer, G Meister
    posted to microrna microrna_target_prediction by heliopais on 2008-06-24 12:33:10 as ** along with 1 group microRNA
  • L(ou)sy miRNA targets?
    Nature Structural and Molecular Biology, Vol. 13, No. 9. (20 August 2006), pp. 754-755.
    by Nikolaus Rajewsky
    posted to microrna microrna_target_prediction newsandviews by heliopais on 2008-06-24 11:09:44 as read along with 3 people and 1 group tardigrade andersbj mtagaya microRNA
  • Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
    Nature (12 June 2005)
    by Yong Zhao, Eva Samal, Deepak Srivastava
    posted to hand2 microrna microrna_target_prediction srf by heliopais on 2008-06-02 15:13:00 as read along with 3 people and 1 group hansen mtagaya maralena microRNA
  • On the relationship between GC content and the number of predicted microRNA binding sites by MicroInspector.
    Computational biology and chemistry, Vol. 32, No. 3. (10 March 2008), pp. 222-226.
    by N Davis, N Biddlecom, D Hecht, GB Fogel
    posted to microrna microrna_target_prediction by heliopais on 2008-05-23 09:14:06 as read along with 1 person and 1 group maralena microRNA
  • Prediction of microRNA targets.
    Drug Discovery Today, Vol. 12, No. 11-12. (26 April 2007), pp. 452-458.
    by P Mazière, AJ Enright
    posted to microrna microrna_target_prediction review by heliopais on 2008-05-08 16:54:29 as *** along with 9 people and 2 groups jyuh jfr tardigrade andersbj mtagaya lp2 jayster4 ale maralena Bioinformatics microRNA
  • A scoring matrix approach to detecting miRNA target sites
    Algorithms for Molecular Biology, Vol. 3 (31 March 2008), 3.
    by Simon Moxon, Vincent Moulton, Jan T Kim
    posted to microrna microrna_target_prediction by heliopais on 2008-04-09 09:54:15 as ***** along with 1 person and 1 group dquest microRNA
  • The Effect of Central Loops in miRNA:MRE Duplexes on the Efficiency of miRNA-Mediated Gene Regulation.
    PLoS ONE, Vol. 3, No. 3. (5 March 2008), e1719.
    by W Ye, Q Lv, CK Wong, S Hu, C Fu, Z Hua, G Cai, G Li, BB Yang, Y Zhang
    posted to microrna microrna_target_prediction by heliopais on 2008-03-26 13:35:39 as ***** along with 1 person and 1 group mtagaya microRNA
  • MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis.
    Genome Research, Vol. 18, No. 3. (29 January 2008), pp. 404-411.
    by Zhongmin Tian, Andrew SS Greene, Jennifer LL Pietrusz, Isaac RR Matus, Mingyu Liang
    posted to microarray microrna microrna_target_prediction by heliopais on 2008-03-05 13:47:19 as ** along with 4 people and 1 group jyuh maralena lp2 bootsy microRNA
  • Discovery of microRNA-mRNA modules via population-based probabilistic learning.
    Bioinformatics, Vol. 23, No. 9. (9 March 2007), pp. 1141-1447.
    by Je-Gun Joung, Kyu-Baek Hwang, Jin-Wu Nam, Soo-Jin Kim, Byoung-Tak Zhang
    posted to microrna microrna_target_prediction by heliopais on 2008-03-04 14:01:49 as **** along with 3 people and 3 groups andersbj ealloza lp2 Bioinformatics microRNA BioinfoCIPF
  • Bayesian Inference of MicroRNA Targets from Sequence and Expression Data.
    Journal of Computational Biology, Vol. 14, No. 5. (June 2007), pp. 550-563.
    by Jim C Huang, Quaid D Morris, Brendan J Frey
    posted to genmir microrna microrna_target_prediction by heliopais on 2008-03-04 13:52:40 as ** along with 2 people and 1 group andersbj megraw microRNA
  • miTarget: microRNA target-gene prediction using a Support Vector Machine
    BMC Bioinformatics, Vol. 7 (18 September 2006), 411.
    by Sung-Kyu Kim, Jin-Wu Nam, Je-Keun Rhee, Wha-Jin Lee, Byoung-Tak Zhang
    posted to microrna microrna_target_prediction by heliopais on 2008-01-24 13:49:20 as *** along with 3 people and 1 group jfr tardigrade maralena microRNA
  • Prediction of both conserved and nonconserved microRNA targets in animals
    Bioinformatics (29 November 2007), pp. 325-332.
    by Xiaowei Wang, Issam M El-Naqa
    edited by Alex Bateman
    posted to microrna microrna_target_prediction by heliopais on 2008-01-24 09:57:30 as ***** along with 6 people and 1 group giovenko jyuh jfr bootsy lp2 Alexander_Kanitz microRNA
  • The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression
    Genome Biology, Vol. 8, No. 8. (14 August 2007), R166.
    by Lawrence S Hon, Zemin Zhang
    posted to microrna_target_prediction microrna by heliopais on 2008-01-15 11:09:05 as *** along with 2 people and 2 groups jfr andersbj Bioinformatics microRNA
  • A biochemical approach to identifying microRNA targets
    Proceedings of the National Academy of Sciences (27 November 2007), 0709971104.
    by Fedor V Karginov, Cecilia Conaco, Zhenyu Xuan, Bryan H Schmidt, Joel S Parker, Gail Mandel, Gregory J Hannon
    posted to microrna microrna_target_prediction by heliopais on 2008-01-15 09:38:50 as **** along with 6 people and 1 group giovenko jyuh jfr fpattyn wsjames maralena microRNA
  • Experimental validation of miRNA targets
    Methods, Vol. 44, No. 1. (23 December 2007), pp. 47-54.
    by Donald E Kuhn, Mickey M Martin, David S Feldman, Terry, Gerard J Nuovo, Terry S Elton
    posted to microrna microrna_target_prediction by heliopais on 2008-01-09 15:43:06 as *** along with 3 people and 1 group jfr jyuh maralena microRNA
  • MicroTar: predicting microRNA targets from RNA duplexes.
    BMC Bioinformatics, Vol. 7 Suppl 5 (18 December 2006), S20.
    by R Thadani, MT Tammi
    posted to microrna_target_prediction microrna by heliopais on 2007-12-10 18:03:03 as ** along with 4 people and 3 groups tharris tardigrade cdawson maralena C. elegans / WormBase microRNA GIG
  • Systematic identification of microRNA functions by combining target prediction and expression profiling.
    Nucleic Acids Research, Vol. 34, No. 5. (20 March 2006), pp. 1646-1652.
    by Xiaowei Wang, Xiaohui Wang
    posted to microarray microrna microrna_microarray microrna_target_prediction by heliopais on 2007-12-10 17:54:59 as read along with 5 people and 2 groups jfr mortenlindow andersbj mtagaya mgaldzic microRNA CHIP
  • Principles and limitations of computational microRNA gene and target finding.
    DNA Cell Biology, Vol. 26, No. 5. (1 May 2007), pp. 339-351.
    by M Lindow, J Gorodkin
    posted to microrna_target_prediction microrna_gene_finding microrna by heliopais on 2007-12-10 17:46:17 as ** along with 2 people and 1 group debasis maralena microRNA
  • microRNA target predictions across seven Drosophila species and comparison to mammalian targets.
    PLoS Computational Biology, Vol. 1, No. 1. (24 June 2005), e13.
    by D Grün, YL Wang, D Langenberger, KC Gunsalus, N Rajewsky
    posted to microrna_target_prediction microrna by heliopais on 2007-12-10 10:54:49 as ** along with 2 people and 1 group mtagaya Garamonfok microRNA
  • Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method.
    BMC Genomics, Vol. 6, No. 1. (8 June 2005), 88.
    by C Burgler, PM Macdonald
    posted to microrna microrna_target_prediction by heliopais on 2007-12-10 10:42:03 as ** along with 4 people and 1 group mortenlindow pallacinka tauberj zhouyu microRNA
  • Principles of MicroRNA-Target Recognition.
    PLoS Biology, Vol. 3, No. 3. (15 February 2005), e85.
    by Julius Brennecke, Alexander Stark, Robert BB Russell, Stephen MM Cohen
    posted to target_architecture microrna_target_prediction microrna by heliopais on 2007-12-10 10:38:58 as read along with 9 people and 2 groups giovenko rklancer tardigrade andersbj mtagaya cdawson tauberj jfr ronnyherc microRNA GIG
  • Computational identification of microRNA targets
    Developmental Biology, Vol. 267, No. 2. (15 March 2004), pp. 529-535.
    by Nikolaus Rajewsky, Nicholas D Socci
    posted to microrna microrna_target_prediction by heliopais on 2007-11-23 11:06:31 as ***** along with 1 group microRNA
  • Architecture of a validated microRNA::target interaction.
    Chemistry and Biology, Vol. 11, No. 12. (17 December 2004), pp. 1619-1623.
    by MC Vella, K Reinert, FJ Slack
    posted to microrna microrna_target_prediction by heliopais on 2007-11-23 10:02:15 as *** along with 2 people and 2 groups tharris sglandt C. elegans / WormBase microRNA
  • A guide through present computational approaches for the identification of mammalian microRNA targets
    Nature Methods, Vol. 3, No. 11. (23 October 2006), pp. 881-886.
    by Praveen Sethupathy, Molly Megraw, Artemis G Hatzigeorgiou
    posted to microrna_target_prediction microrna by heliopais on 2007-11-22 12:18:18 as read along with 8 people and 4 groups tt jfr balajis tardigrade andersbj dchughes bootsy maralena Bioinformatics microRNA G4ID Genetics-of-Gambling
  • Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions.
    Nature Structural and Molecular Biology, Vol. 13, No. 9. (20 August 2006), pp. 849-851.
    by Dominic Didiano, Oliver Hobert
    posted to microrna microrna_target_prediction by heliopais on 2007-11-22 12:13:17 as read along with 6 people and 4 groups tharris marcius tardigrade andersbj mtagaya lp2 C. elegans / WormBase microRNA BioinfoCIPF SGU-CIPF
  • Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms.
    RNA, Vol. 11, No. 7. (31 May 2005), pp. 995-1003.
    by O Saetrom, O Snøve, P Saetrom
    posted to microrna microrna_target_prediction by heliopais on 2007-11-15 15:55:36 as *** along with 2 people and 1 group mortenlindow zhouyu microRNA
  • Distance constraints between microRNA target sites dictate efficacy and cooperativity
    Nucleic Acids Research, Vol. 35, No. 7. (April 2007), pp. 2333-2342.
    by Pal Saetrom, Bret SE Heale, Ola Snove, Lars Aagaard, Jessica Alluin, John J Rossi
    posted to microrna microrna_target_prediction by heliopais on 2007-11-15 15:51:07 as **** along with 1 group microRNA
  • Evidence of spatially bound gene regulation in Mus musculus: Decreased gene expression proximal to microRNA genomic location.
    Proceedings of the National Academy of Sciences, Vol. 104, No. 12. (12 March 2007), pp. 5020-5025.
    by Hidenori Inaoka, Yutaka Fukuoka, Isaac SS Kohane
    posted to microrna_target_prediction microrna genomics by heliopais on 2007-11-09 16:47:13 as **** along with 4 people and 4 groups andersbj dchughes ealloza bootsy microRNA G4ID BioinfoCIPF Genetics-of-Gambling
  • Human microRNAs target a functionally distinct population of genes with AT-rich 3' UTRs.
    Proceedings of the National Academy of Sciences, Vol. 102, No. 43. (25 October 2005), pp. 15557-15562.
    by H Robins, WH Press
    posted to microrna_target_prediction microrna by heliopais on 2007-11-09 16:44:24 as read along with 2 people and 1 group mortenlindow mtagaya microRNA
  • Improving the prediction of human microRNA target genes by using ensemble algorithm.
    FEBS Letters, Vol. 581, No. 8. (17 April 2007), pp. 1587-1593.
    by X Yan, T Chao, K Tu, Y Zhang, L Xie, Y Gong, J Yuan, B Qiang, X Peng
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 16:35:50 as **** along with 1 person and 1 group tardigrade microRNA
  • Predicting and validating microRNA targets
    Genome Biology, Vol. 5, No. 9. (31 August 2004), 115.
    by Eric Lai
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 16:26:02 as ***** along with 2 people and 1 group natstreet maralena microRNA
  • Identification of Drosophila MicroRNA targets.
    PLoS Biology, Vol. 1, No. 3. (13 October 2003), e60.
    by A Stark, J Brennecke, RB Russell, SM Cohen
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 16:21:00 as ***** along with 2 people and 2 groups eckart_bindewald lp2 Bioinformatics microRNA
  • Spatial preferences of microRNA targets in 3' untranslated regions
    BMC Genomics, Vol. 8 (07 June 2007), 152.
    by William H Majoros, Uwe Ohler
    posted to microrna_target_prediction microrna by heliopais on 2007-11-09 16:01:24 as **** along with 3 people and 1 group andersbj Garamonfok jfr microRNA
  • Inference of miRNA targets using evolutionary conservation and pathway analysis
    BMC Bioinformatics, Vol. 8 (01 March 2007), 69.
    by Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 15:44:32 as **** along with 6 people and 1 group jfr tardigrade andersbj dquest Garamonfok maralena microRNA
  • Computational identification of microRNAs and their targets.
    Computational Biology and Chemistry, Vol. 30, No. 6. (14 September 2006), pp. 395-407.
    by Baohong Zhang, Xiaoping Pan, Qinglian Wang, George PP Cobb, Todd AA Anderson
    posted to provisional microrna_target_prediction microrna by heliopais on 2007-10-24 11:14:31 as *** along with 5 people and 2 groups jfr eckart_bindewald tardigrade cdawson GustavoLacerda microRNA GIG
  • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
    Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20.
    by BP Lewis, CB Burge, DP Bartel
    posted to targetscan microrna_target_prediction microrna by heliopais on 2007-10-24 11:02:47 as **** along with 11 people and 3 groups pengchy jfr marcius maryee eckart_bindewald tardigrade mortenlindow andersbj mtagaya Alexander_Kanitz elfar microRNA BioinfoCIPF SGU-CIPF
  • Prediction of Mammalian MicroRNA Targets
    Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798.
    by Benjamin P Lewis, I-Hung Shih, Matthew W Jones-Rhoades, David P Bartel, Christopher B Burge
    posted to microrna microrna_target_prediction by heliopais on 2007-10-24 10:54:02 as read along with 1 person and 1 group maralena microRNA
  • Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
    RNA, Vol. 13, No. 11. (1 November 2007), pp. 1894-1910.
    by Cydney B Nielsen, Noam Shomron, Rickard Sandberg, Eran Hornstein, Jacob Kitzman, Christopher B Burge
    posted to microrna microrna_target_prediction paper1 by heliopais on 2007-10-23 09:10:28 as read along with 1 person and 1 group lp2 microRNA
  • Naive Bayes for MicroRNA Target Predictions Machine Learning for MicroRNA Targets.
    Bioinformatics, Vol. 23, No. 22. (8 October 2007), pp. 2987-2992.
    by Malik Yousef, Segun Jung, Andrew VV Kossenkov, Louise CC Showe, Michael KK Showe
    posted to microrna_target_prediction microrna by heliopais on 2007-10-11 17:19:23 as *** along with 4 people and 1 group mtagaya ealloza cabbagezs maralena microRNA
  • MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing.
    Molecular Cell, Vol. 27, No. 1. (6 July 2007), pp. 91-105.
    by Andrew Grimson, Kyle K Farh, Wendy KK Johnston, Philip Garrett-Engele, Lee PP Lim, David PP Bartel
    posted to microrna_target_prediction microrna by heliopais on 2007-10-09 10:25:07 as **** along with 6 people and 1 group jfr andersbj zwang bootsy fpattyn maralena microRNA
  • Combinatorial microRNA target predictions
    Nature Genetics, Vol. 37, No. 5. (03 April 2005), pp. 495-500.
    by Azra Krek, Dominic Grün, Matthew N Poy, Rachel Wolf, Lauren Rosenberg, Eric J Epstein, Philip Macmenamin, Isabelle da Piedade, Kristin C Gunsalus, Markus Stoffel, Nikolaus Rajewsky
    posted to microrna microrna_target_prediction by heliopais on 2007-10-03 12:26:19 as read along with 10 people and 1 group tmmurali textoris jfr eckart_bindewald tardigrade mtagaya feipan lp2 bootsy maralena microRNA
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