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groepls library [50 articles]

Neue Artikel in groepls Bibliothek.
  • ProteoWizard: Open Source Software for Rapid Proteomics Tools Development
    Bioinformatics (7 July 2008), btn323.
    by Darren Kessner, Matt Chambers, Robert Burke, David Agus, Parag Mallick
    posted to proteomics lc-ms-ms by groepl on 2008-07-10 12:30:10 as **** along with 1 person renatomilani
  • Accelerating screening of 3D protein data with a graph theoretical approach
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2442-2447.
    by Cornelius Frommel, Christoph Gille, Andrean Goede, Clemens Gropl, Stefan Hougardy, Till Nierhoff, Robert Preissner, Martin Thimm
    posted to statistics proteomics algorithm by groepl on 2008-07-01 02:15:30 as *****
  • OpenMS - An open-source software framework for mass spectrometry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole S Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
    posted to proteomics massspec lc-ms-ms by groepl on 2008-06-30 23:55:15 as ***** along with 4 people brianb olberd jyuh neils
  • Comparison of Affymetrix GeneChip expression measures
    Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 789-794.
    by Rafael A Irizarry, Zhijin Wu, Harris A Jaffee
    posted to statistics benchmark by groepl on 2008-06-10 01:10:38 as ** along with 3 people RMGraze hggr ghattem
  • Comparison of the capability of peak functions in describing real chromatographic peaks
    Journal of Chromatography A, Vol. 952, No. 1-2. (5 April 2002), pp. 63-70.
    by Jianwei Li
    posted to no-tag by groepl on 2008-03-26 15:40:05 as ***
  • Annotation of LC/ESI-MS Mass Signals
    Bioinformatics Research and Development (2007), pp. 371-380.
    by Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann
    posted to massspec metabolomics by groepl on 2008-03-10 17:53:25 as ****
  • A Gentle Tutorial on the EM Algorithm and its Application to Parameter Estimation for Gaussian Mixture and Hidden Markov Models
    (1997)
    by J Bilmes
    posted to algorithm statistics by groepl on 2008-01-25 12:32:17 as ****
  • Logarithmic gap costs decrease alignment accuracy
    BMC Bioinformatics, Vol. 7 (05 December 2006), 527.
    by Reed A Cartwright
    posted to seqalign by groepl on 2007-12-20 21:34:26 as ** along with 1 person and 1 group dpollard EisenLab
  • MathDAMP: a package for differential analysis of metabolite profiles
    BMC Bioinformatics, Vol. 7 (13 December 2006), 530.
    by Richard Baran, Hayataro Kochi, Natsumi Saito, Makoto Suematsu, Tomoyoshi Soga, Takaaki Nishioka, Martin Robert, Masaru Tomita
    posted to massspec metabolomics by groepl on 2007-12-20 21:28:31 as **
  • AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction
    BMC Bioinformatics, Vol. 8 (18 January 2007), 15.
    by Ayumu Saito, Masao Nagasaki, Masaaki Oyama, Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano
    posted to massspec proteomics by groepl on 2007-12-20 21:18:38 as ** along with 1 person jyuh
  • msmsEval: Tandem mass spectral quality assignment for high-throughput proteomics
    BMC Bioinformatics, Vol. 8 (09 February 2007), 51.
    by Jason WH Wong, Matthew J Sullivan, Hugh M Cartwright, Gerard Cagney
    posted to identification massspec proteomics by groepl on 2007-12-20 20:45:56 as **
  • Normalization method for metabolomics data using optimal selection of multiple internal standards
    BMC Bioinformatics, Vol. 8 (15 March 2007), 93.
    by Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic
    posted to massspec proteomics by groepl on 2007-12-20 20:40:36 as ** along with 1 person BIBLIOma
  • Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
    BMC Bioinformatics, Vol. 8 (27 March 2007), 105.
    by Tobias Kind, Oliver Fiehn
    posted to no-tag by groepl on 2007-12-20 20:32:01 as ****
  • A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data
    BMC Bioinformatics, Vol. 8 (20 April 2007), 133.
    by Hua Xu, Michael A Freitas
    posted to identification massspec proteomics by groepl on 2007-12-20 20:28:30 as ** along with 1 person jyuh
  • The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments
    BMC Bioinformatics, Vol. 8 (15 July 2007), 255.
    by Mario Cannataro, Giovanni Cuda, Marco Gaspari, Sergio Greco, Giuseppe Tradigo, Pierangelo Veltri
    posted to identification lc-ms-ms proteomics by groepl on 2007-12-20 20:17:48 as ** along with 1 person jyuh
  • Progressive multiple sequence alignments from triplets
    BMC Bioinformatics, Vol. 8 (15 July 2007), 254.
    by Matthias Kruspe, Peter F Stadler
    posted to seqalign by groepl on 2007-12-20 20:09:37 as **
  • Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments.
    Bioinformatics (11 July 2007)
    by Jaroslaw Harezlak, Mike Wang, David Christiani, Xihong Lin
    posted to massspec proteomics statistics by groepl on 2007-12-20 19:58:28 as ** along with 1 person jyuh
  • SAMPI: Protein identification with Mass Spectra Alignments
    BMC Bioinformatics, Vol. 8 (26 March 2007), 102.
    by Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Boecker
    posted to identification massspec proteomics by groepl on 2007-12-20 19:52:24 as ** along with 1 person BIBLIOma
  • Precise protein quantification based on peptide quantification using iTRAQ
    BMC Bioinformatics, Vol. 8 (21 June 2007), 214.
    by Andreas M Boehm, Stephanie Puetz, Daniela Altenhofer, Albert Sickmann, Michael Falk
    posted to no-tag by groepl on 2007-12-20 19:43:42 as ** along with 1 person jyuh
  • A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases
    FEBS Letters, Vol. 562 (March 2004), pp. 202-206.
    by Jens Allmer, Christine Markert, Einar J Stauber, Michael Hippler
    posted to massspec proteomics by groepl on 2007-11-10 12:39:21 as **
  • MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data
    BMC Bioinformatics, Vol. 8 (13 June 2007), 197.
    by Juergen Hartler, Gerhard G Thallinger, Gernot Stocker, Alexander Sturn, Thomas R Burkard, Erik Korner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski
    posted to massspec proteomics by groepl on 2007-11-02 15:21:57 as *** along with 3 people brianb Thomasah jyuh
  • Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency
    J. Proteome Res., Vol. 6, No. 9. (7 September 2007), pp. 3549-3557.
    by B Zhang, MC Chambers, DL Tabb
    posted to lc-ms-ms proteomics by groepl on 2007-10-29 15:54:47 as ***
  • Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency
    Journal of Proteome Research, Vol. 6, No. 9. (2007), pp. 3549-3557.
    by B Zhang, MC Chambers, DL Tabb
    posted to bibtex-import by groepl on 2007-10-18 15:03:21 as ****
  • De Novo Peptide Sequencing Based on a Divide-and-Conquer Algorithm and Peptide Tandem Spectrum Simulation
    Analytical Chemistry, Vol. 76, No. 21. (2004), pp. 6374-6383.
    by Z Zhang
    posted to bibtex-import by groepl on 2007-10-18 01:26:06 as ***
  • Multidimensional Separations-Based Shotgun Proteomics
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3654-3686.
    by ML Fournier, JM Gilmore, Martin SA Brown, MP Washburn
    posted to bibtex-import by groepl on 2007-10-18 00:46:22 as ***
  • Accurate Mass Measurements in Proteomics
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3621-3653.
    by T Liu, ME Belov, N Jaitly, WJ Qian, RD Smith
    posted to bibtex-import by groepl on 2007-10-18 00:46:22 as ***
  • Serum and Plasma Proteomics
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3601-3620.
    by HJ Issaq, Z Xiao, TD Veenstra
    posted to bibtex-import by groepl on 2007-10-18 00:46:22 as ***
  • Experimental and Computational Procedures for the Assessment of Protein Complexes on a Genome-wide Scale
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3585-3600.
    by GA Musso, Z Zhang, A Emili
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as **
  • Limitations and Pitfalls in Protein Identification by Mass Spectrometry
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3568-3584.
    by G Lubec, Afjehi L Sadat
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as ***
  • Protein Complexes in the Gas Phase: Technology for Structural Genomics and Proteomics
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3544-3567.
    by JLP Benesch, BT Ruotolo, DA Simmons, CV Robinson
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as **
  • Hydroxyl Radical-Mediated Modification of Proteins as Probes for Structural Proteomics
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3514-3543.
    by G Xu, MR Chance
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as **
  • Systematic Genome Reductions: Theoretical and Experimental Approaches
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3498-3513.
    by T Feher, B Papp, C Pal, G Posfai
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as ***
  • Genome Assembly, Rearrangement, and Repeats
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3391-3406.
    by H Tang
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as **
  • Protein Annotation at Genomic Scale: The Current Status
    Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3448-3466.
    by D Frishman
    posted to bibtex-import by groepl on 2007-10-18 00:46:21 as ***
  • Peer Group Vector Median Filter
    Pattern Recognition (2007), pp. 314-323.
    by Bogdan Smolka
    posted to massspec signalproc statistics by groepl on 2007-10-12 15:34:19 as **
  • Machine Learning and Its Applications to Biology.
    PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007)
    by Adi L L Tarca, Vincent J J Carey, Xue-Wen W Chen, Roberto Romero, Sorin Drăghici
    posted to statistics by groepl on 2007-10-10 15:24:29 as *** along with 4 people and 1 group jfr chad_davis rsantana gsiwo Bioinformatics
  • A Primer on Learning in Bayesian Networks for Computational Biology
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e129.
    by Chris J Needham, James R Bradford, Andrew J Bulpitt, David R Westhead
    posted to statistics by groepl on 2007-10-10 15:15:36 as ** along with 11 people and 2 groups isimpson jyuh brian jfr balicea grahamc zwang bertelsen cabbagezs ppark idonaldson Bioinformatics BergmanLab
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to seqalign by groepl on 2007-10-10 15:12:13 as ** along with 9 people and 2 groups smbe2008 mdimmic rvosa timflutre stajich zwang cabbagezs yoanjacquemin marti Bioinformatics FAB-lab
  • Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e43.
    by Benjamin A Shoemaker, Anna R Panchenko
    posted to proteomics by groepl on 2007-10-10 14:57:52 as ** along with 13 people higueruelo carlk Yanno jyuh aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes Evangelia
  • Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e42.
    by Benjamin A Shoemaker, Anna R Panchenko
    posted to proteomics by groepl on 2007-10-10 14:57:25 as ** along with 8 people jyuh aalibes bicko jfr chad_davis cjeans iris_2001 lpfernandes
  • Wavelets in bioinformatics and computational biology: state of art and perspectives
    Bioinformatics, Vol. 19, No. 1. (1 January 2003), pp. 2-9.
    by Pietro Lio
    posted to massspec wavelet by groepl on 2007-10-10 13:20:18 as ***
  • ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
    BMC Bioinformatics, Vol. 8 (23 June 2007), 216.
    by Jan Hummel, Michaela Niemann, Stefanie Wienkoop, Waltraud Schulze, Dirk Steinhaeuser, Joachim Selbig, Dirk Walther, Wolfram Weckwerth
    posted to massspec proteomics by groepl on 2007-10-02 00:27:33 as **** along with 2 people jyuh dullhunk
  • Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Witold Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
    posted to massspec proteomics by groepl on 2007-10-02 00:13:18 as ****
  • Setting Parameters by Example
    (2 Jul 1999)
    by David Eppstein
    posted to seqalign by groepl on 2007-09-21 11:31:36 as **
  • Simple and Fast Inverse Alignment
    Research in Computational Molecular Biology (2006), pp. 441-455.
    by John Kececioglu, Eagu Kim
    posted to seqalign by groepl on 2007-09-21 11:00:59 as **
  • Inverse Sequence Alignment from Partial Examples
    Algorithms in Bioinformatics (2007), pp. 359-370.
    by Eagu Kim, John Kececioglu
    posted to seqalign by groepl on 2007-09-21 10:59:45 as **
  • Feature Extraction for Mass Spectrometry Data
    Life System Modeling and Simulation (2007), pp. 188-196.
    by Yihui Liu
    posted to massspec proteomics by groepl on 2007-09-21 10:30:16 as ***
  • Computational prediction of proteotypic peptides for quantitative proteomics
    Nature Biotechnology, Vol. 25, No. 1. (31 December 2006), pp. 125-131.
    by Parag Mallick, Markus Schirle, Sharon S Chen, Mark R Flory, Hookeun Lee, Daniel Martin, Jeffrey Ranish, Brian Raught, Robert Schmitt, Thilo Werner, Bernhard Kuster, Ruedi Aebersold
    posted to massspec proteomics by groepl on 2007-09-18 12:14:28 as *** along with 2 people jyuh nedwards
  • Introduction to Computational Proteomics
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e114.
    by Jacques Colinge, Keiryn L Bennett
    posted to massspec proteomics by groepl on 2007-09-18 12:13:23 as read along with 5 people and 1 group jyuh chad_davis anwazo zwang cabbagezs Bioinformatics
  • Proteomic analysis of phosphorylation, oxidation and nitrosylation in signal transduction.
    Biochim Biophys Acta, Vol. 1764, No. 12. (December 2006), pp. 1823-1841.
    by CM Spickett, AR Pitt, N Morrice, W Kolch
    posted to massspec proteomics by groepl on 2007-09-17 18:11:40 as **** along with 1 person jyuh
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